BDGP Sequence Production Resources |
Search the DGRC for RE57810
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 578 |
Well: | 10 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12975-RA |
Protein status: | RE57810.pep: gold |
Preliminary Size: | 375 |
Sequenced Size: | 627 |
Gene | Date | Evidence |
---|---|---|
CG12975 | 2001-12-14 | Blastp of sequenced clone |
CG12975 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12975 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12975 | 2008-04-29 | Release 5.5 accounting |
CG12975 | 2008-08-15 | Release 5.9 accounting |
CG12975 | 2008-12-18 | 5.12 accounting |
627 bp (627 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071539
> RE57810.complete AAGAAGAAGAAGAAGGAATACAACGTGCACCGCAACTATTATTTAAAAAC ATTGTTGTTTACCTCATCTCTTTGTATTAATTAAACCATTACAAGCCCGA AAATGAAACTCAGCACATACAACTTCTTGACCTCCGTGGCCATCAAGGGC GTCAAAGTGGGATTTCCCCTGAAACTGACGATTAACAAAAAGGAAGTGGT GGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAATCCTTCCCAAGCTGG ACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGGAACTCACAGAAGAC ATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAATGAACTGCTTTTGCA GAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCTCGAGGGTCAACTGG AGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCGATGGTATACCAAAC ATGCTCCTTAACGAGGACGAGGTCTAGATTACACCCATGTGCTTTTTGTA CCATAATCCCCATAATCCCCTTTCTCCAGACGCGCATTAATATTAAATAA GTTTGTTAGTTTTAAAGTTTGTTTATTTACGAGTTACTAAAAACAATTGG AGCTTGGATAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12975-RA | 620 | CG12975-RA | 10..619 | 4..613 | 3035 | 99.8 | Plus |
CG10508-RC | 1695 | CG10508-RC | 1634..1695 | 613..552 | 295 | 98.3 | Minus |
CG10508.b | 2112 | CG10508.b | 2051..2112 | 613..552 | 295 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21205002..21205329 | 609..282 | 1640 | 100 | Minus |
chr3L | 24539361 | chr3L | 21205649..21205825 | 180..4 | 885 | 100 | Minus |
chr3L | 24539361 | chr3L | 21205481..21205584 | 283..180 | 520 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21215993..21216324 | 613..282 | 1645 | 99.7 | Minus |
3L | 28110227 | 3L | 21216644..21216820 | 180..4 | 885 | 100 | Minus |
3L | 28110227 | 3L | 21216476..21216579 | 283..180 | 520 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21209093..21209424 | 613..282 | 1645 | 99.6 | Minus |
3L | 28103327 | 3L | 21209744..21209920 | 180..4 | 885 | 100 | Minus |
3L | 28103327 | 3L | 21209576..21209679 | 283..180 | 520 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21205000..21205328 | 283..611 | 99 | <- | Minus |
chr3L | 21205482..21205583 | 181..282 | 100 | <- | Minus |
chr3L | 21205649..21205829 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..375 | 103..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..375 | 103..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..375 | 103..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..375 | 103..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..375 | 103..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..611 | 1..611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..611 | 1..611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 16..626 | 1..611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 1..611 | 1..611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12975-RA | 16..626 | 1..611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21215995..21216323 | 283..611 | 99 | <- | Minus |
3L | 21216477..21216578 | 181..282 | 100 | <- | Minus |
3L | 21216644..21216824 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21215995..21216323 | 283..611 | 99 | <- | Minus |
3L | 21216477..21216578 | 181..282 | 100 | <- | Minus |
3L | 21216644..21216824 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21215995..21216323 | 283..611 | 99 | <- | Minus |
3L | 21216477..21216578 | 181..282 | 100 | <- | Minus |
3L | 21216644..21216824 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21209095..21209423 | 283..611 | 99 | <- | Minus |
arm_3L | 21209577..21209678 | 181..282 | 100 | <- | Minus |
arm_3L | 21209744..21209924 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21209095..21209423 | 283..611 | 99 | <- | Minus |
3L | 21209577..21209678 | 181..282 | 100 | <- | Minus |
3L | 21209744..21209924 | 1..180 | 99 | Minus |
Translation from 102 to 476
> RE57810.pep MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE CPETGRVFPISDGIPNMLLNEDEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10180-PA | 124 | GF10180-PA | 1..124 | 1..124 | 531 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13253-PA | 124 | GG13253-PA | 1..124 | 1..124 | 556 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16524-PA | 124 | GH16524-PA | 1..124 | 1..124 | 530 | 86.3 | Plus |
Dgri\GH12113-PA | 124 | GH12113-PA | 1..124 | 1..124 | 530 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12975-PA | 124 | CG12975-PA | 1..124 | 1..124 | 631 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12204-PA | 124 | GI12204-PA | 1..124 | 1..124 | 528 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24597-PA | 124 | GL24597-PA | 1..124 | 1..124 | 546 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11949-PA | 124 | GA11949-PA | 1..124 | 1..124 | 546 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22158-PA | 124 | GM22158-PA | 1..124 | 1..124 | 558 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12134-PA | 124 | GD12134-PA | 1..124 | 1..124 | 621 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11437-PA | 124 | GJ11437-PA | 1..124 | 1..124 | 539 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17370-PA | 124 | GK17370-PA | 1..124 | 1..124 | 547 | 91.1 | Plus |
Translation from 102 to 476
> RE57810.hyp MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE CPETGRVFPISDGIPNMLLNEDEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12975-PA | 124 | CG12975-PA | 1..124 | 1..124 | 631 | 100 | Plus |