Clone RE57840 Report

Search the DGRC for RE57840

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:578
Well:40
Vector:pFlc-1
Associated Gene/TranscriptCG15861-RA
Protein status:RE57840.pep: gold
Preliminary Size:519
Sequenced Size:1080

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15861 2001-12-14 Blastp of sequenced clone
CG15861 2002-01-01 Sim4 clustering to Release 2
CG15861 2003-01-01 Sim4 clustering to Release 3
CG15861 2008-04-29 Release 5.5 accounting
CG15861 2008-08-15 Release 5.9 accounting
CG15861 2008-12-18 5.12 accounting

Clone Sequence Records

RE57840.complete Sequence

1080 bp (1080 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071540

> RE57840.complete
AGTTAGCCGAGTGTGTTGGGGGCCATTGCGTCATCCGCACTGTGTTTGTG
CACAGTGATCGTGACCGAGGCCGTAATGAGATCCGTACACAAAGTGCGCA
GCCTCCGGAAAGCACTTTCACTCTCCCTTTCGTTGCCTGAACCAATCCGC
GGCTCATCACTTGCCATTAGCCGAGATGTCGCGCCGGATGGTCTTCCTAC
AGTTGCTGCTGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGC
TACTGGGAGATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCT
GGTGGTCAACACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGA
ATGGAGTGTGCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATG
GCGGGTAATCCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTG
CGTGGCGGCAGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTG
AGGACAGGCACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGG
GCTCCCCGTCTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTG
CTCCTCCGACGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACA
GCCTGCTTCATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGA
CCACGAGCTTACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACA
GCACCATTATGCTCACAACGGCATCTGCTCCGGGAACTATTGACCTAGAG
AGGAGGTTTGACAGCAATGGGGCTGTTTTAGGTCCCGCTGATGTCGTATG
GATTTTAATATATGTATTTATTGTTTAGGTTCATGATTATTTATGAATTA
AGCTACAAGACTATGTTACTCTTTTTATTGATTTAAAATTTTTATGGAAA
GGCAATCTTGTCTTTAGAAACTGTAAGGAATAACATAAAATATAAAAACA
GCTTTAATCGCCTCATAAAGTAACCTATAATTTGTCCATATTAAAATACC
AACTTCAAAAACGCAAAAAAAAAAAAAAAA

RE57840.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-RA 1445 CG15861-RA 343..1407 1..1065 5295 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20829961..20830540 580..1 2870 99.7 Minus
chr2R 21145070 chr2R 20829335..20829708 1064..691 1855 99.7 Minus
chr2R 21145070 chr2R 20829766..20829877 690..579 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24944018..24944597 580..1 2870 99.7 Minus
2R 25286936 2R 24943391..24943765 1065..691 1875 100 Minus
2R 25286936 2R 24943823..24943934 690..579 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24945217..24945796 580..1 2870 99.6 Minus
2R 25260384 2R 24944590..24944964 1065..691 1875 100 Minus
2R 25260384 2R 24945022..24945133 690..579 560 100 Minus
Blast to na_te.dros performed 2019-03-16 12:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 3861..3963 945..842 112 57.7 Minus

RE57840.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:51 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20829335..20829708 691..1064 99 <- Minus
chr2R 20829766..20829876 580..690 100 <- Minus
chr2R 20829962..20830540 1..579 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:57 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 176..793 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:03 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 176..793 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:42:24 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 176..793 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:12 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 176..793 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:53 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 176..793 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:44:10 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:03 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:42:24 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 4..1067 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:36 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:53 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 4..1067 1..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:51 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24943392..24943765 691..1064 100 <- Minus
2R 24943823..24943933 580..690 100 <- Minus
2R 24944019..24944597 1..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:51 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24943392..24943765 691..1064 100 <- Minus
2R 24943823..24943933 580..690 100 <- Minus
2R 24944019..24944597 1..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:51 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24943392..24943765 691..1064 100 <- Minus
2R 24943823..24943933 580..690 100 <- Minus
2R 24944019..24944597 1..579 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:42:24 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20830915..20831288 691..1064 100 <- Minus
arm_2R 20831346..20831456 580..690 100 <- Minus
arm_2R 20831542..20832120 1..579 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:49 Download gff for RE57840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24944609..24944982 691..1064 100 <- Minus
2R 24945040..24945150 580..690 100 <- Minus
2R 24945236..24945814 1..579 99   Minus

RE57840.pep Sequence

Translation from 175 to 792

> RE57840.pep
MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV
RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA
APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC
AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI
CSGNY*

RE57840.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11523-PA 204 GF11523-PA 13..204 14..205 816 79.7 Plus
Dana\GF14273-PA 399 GF14273-PA 214..347 57..205 159 33.8 Plus
Dana\GF14275-PA 710 GF14275-PA 207..345 39..189 159 30.7 Plus
Dana\GF14275-PA 710 GF14275-PA 78..203 48..188 145 35.2 Plus
Dana\GF15608-PA 421 GF15608-PA 213..334 48..188 143 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19874-PA 205 GG19874-PA 1..205 1..205 988 90.7 Plus
Dere\GG12141-PA 339 GG12141-PA 1..179 5..190 158 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22047-PA 206 GH22047-PA 21..206 20..205 716 69.9 Plus
Dgri\GH18949-PA 200 GH18949-PA 12..167 35..201 157 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-PB 205 CG15861-PB 1..205 1..205 1206 100 Plus
CG15861-PA 205 CG15861-PA 1..205 1..205 1206 100 Plus
eater-PC 1074 CG6124-PC 110..260 35..198 217 31.7 Plus
NimC2-PA 648 CG18146-PA 219..356 36..188 207 33.5 Plus
NimC2-PC 701 CG18146-PC 272..409 36..188 207 33.5 Plus
NimC2-PB 701 CG18146-PB 272..409 36..188 207 33.5 Plus
eater-PC 1074 CG6124-PC 315..465 36..203 206 33.1 Plus
NimC1-PA 620 CG8942-PA 305..443 47..201 203 30.4 Plus
NimC1-PC 622 CG8942-PC 307..445 47..201 203 30.4 Plus
NimC1-PB 622 CG8942-PB 307..445 47..201 203 30.4 Plus
eater-PC 1074 CG6124-PC 42..181 36..188 201 27.7 Plus
NimB1-PA 402 CG33119-PA 210..346 49..201 200 33.5 Plus
eater-PC 1074 CG6124-PC 645..795 36..203 199 32.6 Plus
eater-PC 1074 CG6124-PC 579..729 36..203 198 32.6 Plus
eater-PC 1074 CG6124-PC 381..531 36..203 197 32.6 Plus
eater-PC 1074 CG6124-PC 262..399 49..203 191 32.3 Plus
NimB2-PA 421 CG31839-PA 213..334 48..188 191 31.2 Plus
NimB1-PB 403 CG33119-PB 210..347 49..201 190 33.3 Plus
NimC2-PA 648 CG18146-PA 402..531 46..188 189 32.2 Plus
NimC2-PC 701 CG18146-PC 455..584 46..188 189 32.2 Plus
NimC2-PB 701 CG18146-PB 455..584 46..188 189 32.2 Plus
eater-PC 1074 CG6124-PC 513..663 36..203 188 32 Plus
NimC2-PA 648 CG18146-PA 18..154 43..192 188 31.6 Plus
NimC2-PA 648 CG18146-PA 113..254 35..188 188 27.3 Plus
NimC2-PC 701 CG18146-PC 166..307 35..188 188 27.3 Plus
NimC2-PB 701 CG18146-PB 166..307 35..188 188 27.3 Plus
NimC2-PC 701 CG18146-PC 76..207 48..192 186 32 Plus
NimC2-PB 701 CG18146-PB 76..207 48..192 186 32 Plus
eater-PC 1074 CG6124-PC 767..909 25..188 184 29.9 Plus
eater-PC 1074 CG6124-PC 843..989 36..188 184 34.4 Plus
NimB4-PA 448 CG33115-PA 183..367 24..188 184 27.5 Plus
NimC2-PA 648 CG18146-PA 162..288 49..188 183 31.9 Plus
NimC2-PC 701 CG18146-PC 215..341 49..188 183 31.9 Plus
NimC2-PB 701 CG18146-PB 215..341 49..188 183 31.9 Plus
NimC2-PA 648 CG18146-PA 335..461 49..188 175 30.6 Plus
NimC2-PC 701 CG18146-PC 388..514 49..188 175 30.6 Plus
NimC2-PB 701 CG18146-PB 388..514 49..188 175 30.6 Plus
NimC1-PA 620 CG8942-PA 219..396 48..188 173 28.8 Plus
NimC1-PC 622 CG8942-PC 221..398 48..188 173 28.8 Plus
NimC1-PB 622 CG8942-PB 221..398 48..188 173 28.8 Plus
eater-PC 1074 CG6124-PC 346..480 36..188 170 29.2 Plus
NimC2-PA 648 CG18146-PA 58..197 49..203 168 30.6 Plus
NimC2-PC 701 CG18146-PC 111..250 49..203 168 30.6 Plus
NimC2-PB 701 CG18146-PB 111..250 49..203 168 30.6 Plus
NimB4-PA 448 CG33115-PA 126..266 36..188 165 31.2 Plus
NimB5-PC 315 CG16873-PC 162..312 36..201 165 28 Plus
NimB5-PB 315 CG16873-PB 162..312 36..201 165 28 Plus
NimB5-PA 315 CG16873-PA 162..312 36..201 165 28 Plus
NimC2-PA 648 CG18146-PA 430..566 39..187 161 31.2 Plus
NimC2-PC 701 CG18146-PC 483..619 39..187 161 31.2 Plus
NimC2-PB 701 CG18146-PB 483..619 39..187 161 31.2 Plus
NimB5-PC 315 CG16873-PC 144..281 50..204 154 29.7 Plus
NimB5-PB 315 CG16873-PB 144..281 50..204 154 29.7 Plus
NimB5-PA 315 CG16873-PA 144..281 50..204 154 29.7 Plus
NimB2-PA 421 CG31839-PA 168..302 36..188 152 29.9 Plus
NimC1-PA 620 CG8942-PA 159..294 49..188 151 31.4 Plus
NimC1-PC 622 CG8942-PC 161..296 49..188 151 31.4 Plus
NimC1-PB 622 CG8942-PB 161..296 49..188 151 31.4 Plus
NimC1-PC 622 CG8942-PC 60..232 13..190 149 27.1 Plus
NimC1-PB 622 CG8942-PB 60..232 13..190 149 27.1 Plus
NimC1-PA 620 CG8942-PA 66..230 20..190 148 28.3 Plus
NimB2-PA 421 CG31839-PA 346..404 48..108 147 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19133-PA 205 GI19133-PA 6..205 6..205 722 66 Plus
Dmoj\GI10890-PA 594 GI10890-PA 257..394 42..198 147 30.6 Plus
Dmoj\GI10890-PA 594 GI10890-PA 290..426 42..200 144 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10894-PA 206 GL10894-PA 1..206 1..205 810 79.6 Plus
Dper\GL21252-PA 408 GL21252-PA 219..354 53..204 149 34.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13987-PA 206 GA13987-PA 1..206 1..205 809 79.6 Plus
Dpse\GA17296-PA 408 GA17296-PA 219..354 53..204 151 34.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11775-PA 205 GM11775-PA 1..205 1..205 1006 93.2 Plus
Dsec\GM14996-PA 622 GM14996-PA 242..412 48..202 143 31 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24905-PA 205 GD24905-PA 1..205 1..205 1015 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22266-PA 205 GJ22266-PA 20..205 20..205 670 69.9 Plus
Dvir\GJ18075-PA 399 GJ18075-PA 190..312 48..188 144 33.3 Plus
Dvir\GJ24134-PA 1032 GJ24134-PA 291..438 32..198 144 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20728-PA 204 GK20728-PA 1..204 5..205 757 69.1 Plus
Dwil\GK15110-PA 405 GK15110-PA 197..318 48..188 145 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11398-PA 205 GE11398-PA 1..205 1..205 987 90.2 Plus

RE57840.hyp Sequence

Translation from 175 to 792

> RE57840.hyp
MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV
RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA
APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC
AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI
CSGNY*

RE57840.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-PB 205 CG15861-PB 1..205 1..205 1206 100 Plus
CG15861-PA 205 CG15861-PA 1..205 1..205 1206 100 Plus
eater-PC 1074 CG6124-PC 110..260 35..198 217 31.7 Plus
NimC2-PA 648 CG18146-PA 219..356 36..188 207 33.5 Plus
NimC2-PC 701 CG18146-PC 272..409 36..188 207 33.5 Plus
eater-PC 1074 CG6124-PC 315..465 36..203 206 33.1 Plus
eater-PC 1074 CG6124-PC 42..181 36..188 201 27.7 Plus
eater-PC 1074 CG6124-PC 645..795 36..203 199 32.6 Plus
eater-PC 1074 CG6124-PC 579..729 36..203 198 32.6 Plus
eater-PC 1074 CG6124-PC 381..531 36..203 197 32.6 Plus
eater-PC 1074 CG6124-PC 262..399 49..203 191 32.3 Plus
NimC2-PA 648 CG18146-PA 402..531 46..188 189 32.2 Plus
eater-PC 1074 CG6124-PC 513..663 36..203 188 32 Plus
NimC2-PA 648 CG18146-PA 18..154 43..192 188 31.6 Plus
NimC2-PA 648 CG18146-PA 113..254 35..188 188 27.3 Plus
eater-PC 1074 CG6124-PC 767..909 25..188 184 29.9 Plus
eater-PC 1074 CG6124-PC 843..989 36..188 184 34.4 Plus
NimC2-PA 648 CG18146-PA 162..288 49..188 183 31.9 Plus
NimC2-PA 648 CG18146-PA 335..461 49..188 175 30.6 Plus
eater-PC 1074 CG6124-PC 346..480 36..188 170 29.2 Plus
NimC2-PA 648 CG18146-PA 58..197 49..203 168 30.6 Plus
NimC2-PA 648 CG18146-PA 430..566 39..187 161 31.2 Plus