BDGP Sequence Production Resources |
Search the DGRC for RE57840
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 578 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15861-RA |
Protein status: | RE57840.pep: gold |
Preliminary Size: | 519 |
Sequenced Size: | 1080 |
Gene | Date | Evidence |
---|---|---|
CG15861 | 2001-12-14 | Blastp of sequenced clone |
CG15861 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15861 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15861 | 2008-04-29 | Release 5.5 accounting |
CG15861 | 2008-08-15 | Release 5.9 accounting |
CG15861 | 2008-12-18 | 5.12 accounting |
1080 bp (1080 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071540
> RE57840.complete AGTTAGCCGAGTGTGTTGGGGGCCATTGCGTCATCCGCACTGTGTTTGTG CACAGTGATCGTGACCGAGGCCGTAATGAGATCCGTACACAAAGTGCGCA GCCTCCGGAAAGCACTTTCACTCTCCCTTTCGTTGCCTGAACCAATCCGC GGCTCATCACTTGCCATTAGCCGAGATGTCGCGCCGGATGGTCTTCCTAC AGTTGCTGCTGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGC TACTGGGAGATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCT GGTGGTCAACACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGA ATGGAGTGTGCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATG GCGGGTAATCCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTG CGTGGCGGCAGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTG AGGACAGGCACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGG GCTCCCCGTCTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTG CTCCTCCGACGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACA GCCTGCTTCATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGA CCACGAGCTTACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACA GCACCATTATGCTCACAACGGCATCTGCTCCGGGAACTATTGACCTAGAG AGGAGGTTTGACAGCAATGGGGCTGTTTTAGGTCCCGCTGATGTCGTATG GATTTTAATATATGTATTTATTGTTTAGGTTCATGATTATTTATGAATTA AGCTACAAGACTATGTTACTCTTTTTATTGATTTAAAATTTTTATGGAAA GGCAATCTTGTCTTTAGAAACTGTAAGGAATAACATAAAATATAAAAACA GCTTTAATCGCCTCATAAAGTAACCTATAATTTGTCCATATTAAAATACC AACTTCAAAAACGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15861-RA | 1445 | CG15861-RA | 343..1407 | 1..1065 | 5295 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20829961..20830540 | 580..1 | 2870 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 20829335..20829708 | 1064..691 | 1855 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 20829766..20829877 | 690..579 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24944018..24944597 | 580..1 | 2870 | 99.7 | Minus |
2R | 25286936 | 2R | 24943391..24943765 | 1065..691 | 1875 | 100 | Minus |
2R | 25286936 | 2R | 24943823..24943934 | 690..579 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24945217..24945796 | 580..1 | 2870 | 99.6 | Minus |
2R | 25260384 | 2R | 24944590..24944964 | 1065..691 | 1875 | 100 | Minus |
2R | 25260384 | 2R | 24945022..24945133 | 690..579 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 3861..3963 | 945..842 | 112 | 57.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20829335..20829708 | 691..1064 | 99 | <- | Minus |
chr2R | 20829766..20829876 | 580..690 | 100 | <- | Minus |
chr2R | 20829962..20830540 | 1..579 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..618 | 176..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..618 | 176..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..618 | 176..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..618 | 176..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..618 | 176..793 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..1064 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..1064 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 4..1067 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 1..1064 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15861-RA | 4..1067 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24943392..24943765 | 691..1064 | 100 | <- | Minus |
2R | 24943823..24943933 | 580..690 | 100 | <- | Minus |
2R | 24944019..24944597 | 1..579 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24943392..24943765 | 691..1064 | 100 | <- | Minus |
2R | 24943823..24943933 | 580..690 | 100 | <- | Minus |
2R | 24944019..24944597 | 1..579 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24943392..24943765 | 691..1064 | 100 | <- | Minus |
2R | 24943823..24943933 | 580..690 | 100 | <- | Minus |
2R | 24944019..24944597 | 1..579 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20830915..20831288 | 691..1064 | 100 | <- | Minus |
arm_2R | 20831346..20831456 | 580..690 | 100 | <- | Minus |
arm_2R | 20831542..20832120 | 1..579 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24944609..24944982 | 691..1064 | 100 | <- | Minus |
2R | 24945040..24945150 | 580..690 | 100 | <- | Minus |
2R | 24945236..24945814 | 1..579 | 99 | Minus |
Translation from 175 to 792
> RE57840.pep MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI CSGNY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11523-PA | 204 | GF11523-PA | 13..204 | 14..205 | 816 | 79.7 | Plus |
Dana\GF14273-PA | 399 | GF14273-PA | 214..347 | 57..205 | 159 | 33.8 | Plus |
Dana\GF14275-PA | 710 | GF14275-PA | 207..345 | 39..189 | 159 | 30.7 | Plus |
Dana\GF14275-PA | 710 | GF14275-PA | 78..203 | 48..188 | 145 | 35.2 | Plus |
Dana\GF15608-PA | 421 | GF15608-PA | 213..334 | 48..188 | 143 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19874-PA | 205 | GG19874-PA | 1..205 | 1..205 | 988 | 90.7 | Plus |
Dere\GG12141-PA | 339 | GG12141-PA | 1..179 | 5..190 | 158 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22047-PA | 206 | GH22047-PA | 21..206 | 20..205 | 716 | 69.9 | Plus |
Dgri\GH18949-PA | 200 | GH18949-PA | 12..167 | 35..201 | 157 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15861-PB | 205 | CG15861-PB | 1..205 | 1..205 | 1206 | 100 | Plus |
CG15861-PA | 205 | CG15861-PA | 1..205 | 1..205 | 1206 | 100 | Plus |
eater-PC | 1074 | CG6124-PC | 110..260 | 35..198 | 217 | 31.7 | Plus |
NimC2-PA | 648 | CG18146-PA | 219..356 | 36..188 | 207 | 33.5 | Plus |
NimC2-PC | 701 | CG18146-PC | 272..409 | 36..188 | 207 | 33.5 | Plus |
NimC2-PB | 701 | CG18146-PB | 272..409 | 36..188 | 207 | 33.5 | Plus |
eater-PC | 1074 | CG6124-PC | 315..465 | 36..203 | 206 | 33.1 | Plus |
NimC1-PA | 620 | CG8942-PA | 305..443 | 47..201 | 203 | 30.4 | Plus |
NimC1-PC | 622 | CG8942-PC | 307..445 | 47..201 | 203 | 30.4 | Plus |
NimC1-PB | 622 | CG8942-PB | 307..445 | 47..201 | 203 | 30.4 | Plus |
eater-PC | 1074 | CG6124-PC | 42..181 | 36..188 | 201 | 27.7 | Plus |
NimB1-PA | 402 | CG33119-PA | 210..346 | 49..201 | 200 | 33.5 | Plus |
eater-PC | 1074 | CG6124-PC | 645..795 | 36..203 | 199 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 579..729 | 36..203 | 198 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 381..531 | 36..203 | 197 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 262..399 | 49..203 | 191 | 32.3 | Plus |
NimB2-PA | 421 | CG31839-PA | 213..334 | 48..188 | 191 | 31.2 | Plus |
NimB1-PB | 403 | CG33119-PB | 210..347 | 49..201 | 190 | 33.3 | Plus |
NimC2-PA | 648 | CG18146-PA | 402..531 | 46..188 | 189 | 32.2 | Plus |
NimC2-PC | 701 | CG18146-PC | 455..584 | 46..188 | 189 | 32.2 | Plus |
NimC2-PB | 701 | CG18146-PB | 455..584 | 46..188 | 189 | 32.2 | Plus |
eater-PC | 1074 | CG6124-PC | 513..663 | 36..203 | 188 | 32 | Plus |
NimC2-PA | 648 | CG18146-PA | 18..154 | 43..192 | 188 | 31.6 | Plus |
NimC2-PA | 648 | CG18146-PA | 113..254 | 35..188 | 188 | 27.3 | Plus |
NimC2-PC | 701 | CG18146-PC | 166..307 | 35..188 | 188 | 27.3 | Plus |
NimC2-PB | 701 | CG18146-PB | 166..307 | 35..188 | 188 | 27.3 | Plus |
NimC2-PC | 701 | CG18146-PC | 76..207 | 48..192 | 186 | 32 | Plus |
NimC2-PB | 701 | CG18146-PB | 76..207 | 48..192 | 186 | 32 | Plus |
eater-PC | 1074 | CG6124-PC | 767..909 | 25..188 | 184 | 29.9 | Plus |
eater-PC | 1074 | CG6124-PC | 843..989 | 36..188 | 184 | 34.4 | Plus |
NimB4-PA | 448 | CG33115-PA | 183..367 | 24..188 | 184 | 27.5 | Plus |
NimC2-PA | 648 | CG18146-PA | 162..288 | 49..188 | 183 | 31.9 | Plus |
NimC2-PC | 701 | CG18146-PC | 215..341 | 49..188 | 183 | 31.9 | Plus |
NimC2-PB | 701 | CG18146-PB | 215..341 | 49..188 | 183 | 31.9 | Plus |
NimC2-PA | 648 | CG18146-PA | 335..461 | 49..188 | 175 | 30.6 | Plus |
NimC2-PC | 701 | CG18146-PC | 388..514 | 49..188 | 175 | 30.6 | Plus |
NimC2-PB | 701 | CG18146-PB | 388..514 | 49..188 | 175 | 30.6 | Plus |
NimC1-PA | 620 | CG8942-PA | 219..396 | 48..188 | 173 | 28.8 | Plus |
NimC1-PC | 622 | CG8942-PC | 221..398 | 48..188 | 173 | 28.8 | Plus |
NimC1-PB | 622 | CG8942-PB | 221..398 | 48..188 | 173 | 28.8 | Plus |
eater-PC | 1074 | CG6124-PC | 346..480 | 36..188 | 170 | 29.2 | Plus |
NimC2-PA | 648 | CG18146-PA | 58..197 | 49..203 | 168 | 30.6 | Plus |
NimC2-PC | 701 | CG18146-PC | 111..250 | 49..203 | 168 | 30.6 | Plus |
NimC2-PB | 701 | CG18146-PB | 111..250 | 49..203 | 168 | 30.6 | Plus |
NimB4-PA | 448 | CG33115-PA | 126..266 | 36..188 | 165 | 31.2 | Plus |
NimB5-PC | 315 | CG16873-PC | 162..312 | 36..201 | 165 | 28 | Plus |
NimB5-PB | 315 | CG16873-PB | 162..312 | 36..201 | 165 | 28 | Plus |
NimB5-PA | 315 | CG16873-PA | 162..312 | 36..201 | 165 | 28 | Plus |
NimC2-PA | 648 | CG18146-PA | 430..566 | 39..187 | 161 | 31.2 | Plus |
NimC2-PC | 701 | CG18146-PC | 483..619 | 39..187 | 161 | 31.2 | Plus |
NimC2-PB | 701 | CG18146-PB | 483..619 | 39..187 | 161 | 31.2 | Plus |
NimB5-PC | 315 | CG16873-PC | 144..281 | 50..204 | 154 | 29.7 | Plus |
NimB5-PB | 315 | CG16873-PB | 144..281 | 50..204 | 154 | 29.7 | Plus |
NimB5-PA | 315 | CG16873-PA | 144..281 | 50..204 | 154 | 29.7 | Plus |
NimB2-PA | 421 | CG31839-PA | 168..302 | 36..188 | 152 | 29.9 | Plus |
NimC1-PA | 620 | CG8942-PA | 159..294 | 49..188 | 151 | 31.4 | Plus |
NimC1-PC | 622 | CG8942-PC | 161..296 | 49..188 | 151 | 31.4 | Plus |
NimC1-PB | 622 | CG8942-PB | 161..296 | 49..188 | 151 | 31.4 | Plus |
NimC1-PC | 622 | CG8942-PC | 60..232 | 13..190 | 149 | 27.1 | Plus |
NimC1-PB | 622 | CG8942-PB | 60..232 | 13..190 | 149 | 27.1 | Plus |
NimC1-PA | 620 | CG8942-PA | 66..230 | 20..190 | 148 | 28.3 | Plus |
NimB2-PA | 421 | CG31839-PA | 346..404 | 48..108 | 147 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19133-PA | 205 | GI19133-PA | 6..205 | 6..205 | 722 | 66 | Plus |
Dmoj\GI10890-PA | 594 | GI10890-PA | 257..394 | 42..198 | 147 | 30.6 | Plus |
Dmoj\GI10890-PA | 594 | GI10890-PA | 290..426 | 42..200 | 144 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10894-PA | 206 | GL10894-PA | 1..206 | 1..205 | 810 | 79.6 | Plus |
Dper\GL21252-PA | 408 | GL21252-PA | 219..354 | 53..204 | 149 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13987-PA | 206 | GA13987-PA | 1..206 | 1..205 | 809 | 79.6 | Plus |
Dpse\GA17296-PA | 408 | GA17296-PA | 219..354 | 53..204 | 151 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11775-PA | 205 | GM11775-PA | 1..205 | 1..205 | 1006 | 93.2 | Plus |
Dsec\GM14996-PA | 622 | GM14996-PA | 242..412 | 48..202 | 143 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24905-PA | 205 | GD24905-PA | 1..205 | 1..205 | 1015 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22266-PA | 205 | GJ22266-PA | 20..205 | 20..205 | 670 | 69.9 | Plus |
Dvir\GJ18075-PA | 399 | GJ18075-PA | 190..312 | 48..188 | 144 | 33.3 | Plus |
Dvir\GJ24134-PA | 1032 | GJ24134-PA | 291..438 | 32..198 | 144 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20728-PA | 204 | GK20728-PA | 1..204 | 5..205 | 757 | 69.1 | Plus |
Dwil\GK15110-PA | 405 | GK15110-PA | 197..318 | 48..188 | 145 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11398-PA | 205 | GE11398-PA | 1..205 | 1..205 | 987 | 90.2 | Plus |
Translation from 175 to 792
> RE57840.hyp MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI CSGNY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15861-PB | 205 | CG15861-PB | 1..205 | 1..205 | 1206 | 100 | Plus |
CG15861-PA | 205 | CG15861-PA | 1..205 | 1..205 | 1206 | 100 | Plus |
eater-PC | 1074 | CG6124-PC | 110..260 | 35..198 | 217 | 31.7 | Plus |
NimC2-PA | 648 | CG18146-PA | 219..356 | 36..188 | 207 | 33.5 | Plus |
NimC2-PC | 701 | CG18146-PC | 272..409 | 36..188 | 207 | 33.5 | Plus |
eater-PC | 1074 | CG6124-PC | 315..465 | 36..203 | 206 | 33.1 | Plus |
eater-PC | 1074 | CG6124-PC | 42..181 | 36..188 | 201 | 27.7 | Plus |
eater-PC | 1074 | CG6124-PC | 645..795 | 36..203 | 199 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 579..729 | 36..203 | 198 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 381..531 | 36..203 | 197 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 262..399 | 49..203 | 191 | 32.3 | Plus |
NimC2-PA | 648 | CG18146-PA | 402..531 | 46..188 | 189 | 32.2 | Plus |
eater-PC | 1074 | CG6124-PC | 513..663 | 36..203 | 188 | 32 | Plus |
NimC2-PA | 648 | CG18146-PA | 18..154 | 43..192 | 188 | 31.6 | Plus |
NimC2-PA | 648 | CG18146-PA | 113..254 | 35..188 | 188 | 27.3 | Plus |
eater-PC | 1074 | CG6124-PC | 767..909 | 25..188 | 184 | 29.9 | Plus |
eater-PC | 1074 | CG6124-PC | 843..989 | 36..188 | 184 | 34.4 | Plus |
NimC2-PA | 648 | CG18146-PA | 162..288 | 49..188 | 183 | 31.9 | Plus |
NimC2-PA | 648 | CG18146-PA | 335..461 | 49..188 | 175 | 30.6 | Plus |
eater-PC | 1074 | CG6124-PC | 346..480 | 36..188 | 170 | 29.2 | Plus |
NimC2-PA | 648 | CG18146-PA | 58..197 | 49..203 | 168 | 30.6 | Plus |
NimC2-PA | 648 | CG18146-PA | 430..566 | 39..187 | 161 | 31.2 | Plus |