BDGP Sequence Production Resources |
Search the DGRC for RE57845
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 578 |
Well: | 45 |
Vector: | pFlc-1 |
Associated Gene/Transcript | lbm-RA |
Protein status: | RE57845.pep: gold |
Preliminary Size: | 1006 |
Sequenced Size: | 1040 |
Gene | Date | Evidence |
---|---|---|
CG2374 | 2001-12-14 | Blastp of sequenced clone |
CG2374 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2374 | 2003-01-01 | Sim4 clustering to Release 3 |
lbm | 2008-04-29 | Release 5.5 accounting |
lbm | 2008-08-15 | Release 5.9 accounting |
lbm | 2008-12-18 | 5.12 accounting |
1040 bp (1040 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071541
> RE57845.complete GAGTTCGCCAGCGAACGCAGAACGCGCCAGACCAAAAAGTTCAGATTCGA GAGCGGATATCCCGGCGAGCGTTCAGCGGAAATATATTTGTTTGTTATTC GAGTCCAGCAACGAATATTTAAATAAACAAAAAACGAACTTTATTCGTGT GCGGAGAGAGAAGTCAAAAGATCCAATAAAATGGGTTGCGCCACGACCAG CGTGAAGATCGCCTCCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTG CTGGGGCCATCGGCTGGATAGCTTACAATGCGGACACGGAGACGGAGGAA TTCGTAATAGCCGCTTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCT GCTGGGCATCTTCGCGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGA GTGCTGTCTTCCTGCTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGC CTGTTCCTCCACGAGTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGT GGCCTGGCAGGCGAACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCT GCGGCCAGAGCAGCGCCCAGGACTATATCCACCTCAGCCTGCTGATCCCG CCCAGCTGCTACGCGGATCTGCAGCAGACCCCCGACCACCTCTATCTGGA CGGGTGCATCGAAAAGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCT TCATCATAGTGTCCTGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCC TTGGCCGTGTTTCTGGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGA GTTCTAGTTCTAGGCCTTCGGTAATCTCGAGCTATCCAACAGTACAAACT CGGAATCGGGGTCTCGCTGATATTTTTCTCTTCAACATTTCATAACCAAA TGCAAAGGACAGTCATAAATTATTCACTCCTACCTTAATGTAACCTGTAA TTAAAGTACATATTTATAGTTCAATTACCCATTATAAGTATCATAATAAA TGTGCGCGTGTTTGTTTTCACACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2938682..2939018 | 399..735 | 1685 | 100 | Plus |
chr2R | 21145070 | chr2R | 2939079..2939367 | 734..1022 | 1445 | 100 | Plus |
chr2R | 21145070 | chr2R | 2937201..2937369 | 2..170 | 845 | 100 | Plus |
chr2R | 21145070 | chr2R | 2938467..2938626 | 240..399 | 800 | 100 | Plus |
chr2R | 21145070 | chr2R | 2937436..2937507 | 169..240 | 345 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 2927551..2927602 | 2..53 | 245 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7051277..7051613 | 399..735 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 7051674..7051962 | 734..1022 | 1445 | 100 | Plus |
2R | 25286936 | 2R | 7049797..7049965 | 2..170 | 845 | 100 | Plus |
2R | 25286936 | 2R | 7051062..7051221 | 240..399 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7050032..7050103 | 169..240 | 360 | 100 | Plus |
2R | 25286936 | 2R | 7040139..7040190 | 2..53 | 245 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7052476..7052812 | 399..735 | 1685 | 100 | Plus |
2R | 25260384 | 2R | 7052873..7053161 | 734..1022 | 1445 | 100 | Plus |
2R | 25260384 | 2R | 7050996..7051164 | 2..170 | 845 | 100 | Plus |
2R | 25260384 | 2R | 7052261..7052420 | 240..399 | 800 | 100 | Plus |
2R | 25260384 | 2R | 7051231..7051302 | 169..240 | 360 | 100 | Plus |
2R | 25260384 | 2R | 7041338..7041389 | 2..53 | 245 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2939081..2939369 | 736..1024 | 99 | Plus | |
chr2R | 2937200..2937369 | 1..170 | 99 | -> | Plus |
chr2R | 2937438..2937507 | 171..240 | 98 | -> | Plus |
chr2R | 2938468..2938626 | 241..399 | 100 | -> | Plus |
chr2R | 2938683..2939018 | 400..735 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 1..627 | 181..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 1..627 | 181..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 1..627 | 181..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 1..627 | 181..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 1..627 | 181..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 2..1024 | 2..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 2..1024 | 2..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 6..1029 | 1..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 2..1024 | 2..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lbm-RA | 6..1029 | 1..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7049796..7049965 | 1..170 | 99 | -> | Plus |
2R | 7050034..7050103 | 171..240 | 100 | -> | Plus |
2R | 7051063..7051221 | 241..399 | 100 | -> | Plus |
2R | 7051278..7051613 | 400..735 | 100 | -> | Plus |
2R | 7051676..7051964 | 736..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7049796..7049965 | 1..170 | 99 | -> | Plus |
2R | 7050034..7050103 | 171..240 | 100 | -> | Plus |
2R | 7051063..7051221 | 241..399 | 100 | -> | Plus |
2R | 7051278..7051613 | 400..735 | 100 | -> | Plus |
2R | 7051676..7051964 | 736..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7049796..7049965 | 1..170 | 99 | -> | Plus |
2R | 7050034..7050103 | 171..240 | 100 | -> | Plus |
2R | 7051063..7051221 | 241..399 | 100 | -> | Plus |
2R | 7051278..7051613 | 400..735 | 100 | -> | Plus |
2R | 7051676..7051964 | 736..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2937301..2937470 | 1..170 | 99 | -> | Plus |
arm_2R | 2937539..2937608 | 171..240 | 100 | -> | Plus |
arm_2R | 2938568..2938726 | 241..399 | 100 | -> | Plus |
arm_2R | 2938783..2939118 | 400..735 | 100 | -> | Plus |
arm_2R | 2939181..2939469 | 736..1024 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7052477..7052812 | 400..735 | 100 | -> | Plus |
2R | 7052875..7053163 | 736..1024 | 99 | Plus | |
2R | 7050995..7051164 | 1..170 | 99 | -> | Plus |
2R | 7051233..7051302 | 171..240 | 100 | -> | Plus |
2R | 7052262..7052420 | 241..399 | 100 | -> | Plus |
Translation from 180 to 806
> RE57845.pep MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK NKQRRMEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12690-PA | 208 | GF12690-PA | 1..208 | 1..208 | 935 | 82.2 | Plus |
Dana\GF12691-PA | 218 | GF12691-PA | 1..218 | 1..208 | 220 | 30 | Plus |
Dana\GF12689-PA | 217 | GF12689-PA | 1..217 | 1..208 | 212 | 28.6 | Plus |
Dana\GF12682-PA | 227 | GF12682-PA | 1..227 | 1..208 | 212 | 32 | Plus |
Dana\GF13154-PA | 226 | GF13154-PA | 48..226 | 37..208 | 193 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23252-PA | 208 | GG23252-PA | 1..208 | 1..208 | 1004 | 92.3 | Plus |
Dere\GG23251-PA | 217 | GG23251-PA | 1..217 | 1..208 | 241 | 31.4 | Plus |
Dere\GG23255-PA | 211 | GG23255-PA | 1..208 | 1..205 | 207 | 27.7 | Plus |
Dere\GG23253-PA | 218 | GG23253-PA | 1..218 | 1..208 | 204 | 29.1 | Plus |
Dere\GG10774-PA | 219 | GG10774-PA | 1..215 | 1..205 | 189 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21508-PA | 211 | GH21508-PA | 1..211 | 1..208 | 842 | 74.4 | Plus |
Dgri\GH21512-PA | 218 | GH21512-PA | 1..218 | 1..208 | 248 | 30.3 | Plus |
Dgri\GH21509-PA | 218 | GH21509-PA | 1..218 | 1..208 | 235 | 31.5 | Plus |
Dgri\GH21507-PA | 217 | GH21507-PA | 1..217 | 1..208 | 201 | 29.9 | Plus |
Dgri\GH21500-PA | 219 | GH21500-PA | 3..219 | 4..208 | 189 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lbm-PB | 208 | CG2374-PB | 1..208 | 1..208 | 1053 | 100 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..208 | 1053 | 100 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..208 | 257 | 32 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..208 | 243 | 31.7 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..208 | 243 | 31.7 | Plus |
Tsp42Er-PA | 211 | CG12837-PA | 1..211 | 1..208 | 235 | 29.2 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 1..225 | 1..205 | 223 | 34.1 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..225 | 1..205 | 223 | 34.1 | Plus |
Tsp42Eq-PA | 219 | CG12832-PA | 1..215 | 1..205 | 198 | 27.8 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 1..229 | 1..208 | 188 | 25.3 | Plus |
Tsp42Eg-PA | 218 | CG12142-PA | 1..215 | 1..208 | 184 | 29.6 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 3..220 | 4..208 | 182 | 27.9 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 49..226 | 38..208 | 176 | 28.5 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 49..226 | 38..208 | 176 | 28.5 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 49..226 | 38..208 | 176 | 28.5 | Plus |
Tsp42Ek-PB | 215 | CG12841-PB | 1..215 | 1..208 | 171 | 24.5 | Plus |
Tsp42Ek-PA | 215 | CG12841-PA | 1..215 | 1..208 | 171 | 24.5 | Plus |
Tsp42Ep-PB | 250 | CG4471-PB | 3..219 | 2..205 | 161 | 23.4 | Plus |
Tsp42Ep-PA | 250 | CG4471-PA | 3..219 | 2..205 | 161 | 23.4 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 1..223 | 1..205 | 156 | 28.1 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 1..223 | 1..205 | 156 | 28.1 | Plus |
Tsp42Ec-PA | 232 | CG12847-PA | 27..214 | 8..192 | 149 | 25.6 | Plus |
CG30160-PA | 222 | CG30160-PA | 18..222 | 8..202 | 144 | 26.3 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 18..222 | 8..202 | 144 | 26.3 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 4..239 | 3..205 | 143 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19477-PA | 208 | GI19477-PA | 1..208 | 1..208 | 876 | 76.9 | Plus |
Dmoj\GI19481-PA | 220 | GI19481-PA | 1..220 | 1..208 | 244 | 30 | Plus |
Dmoj\GI19479-PA | 218 | GI19479-PA | 55..218 | 50..208 | 217 | 33.5 | Plus |
Dmoj\GI19476-PA | 217 | GI19476-PA | 1..217 | 1..208 | 211 | 30.8 | Plus |
Dmoj\GI19464-PA | 226 | GI19464-PA | 48..226 | 37..208 | 191 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11147-PA | 208 | GL11147-PA | 1..208 | 1..208 | 945 | 82.7 | Plus |
Dper\GL11146-PA | 217 | GL11146-PA | 1..217 | 1..208 | 242 | 30.8 | Plus |
Dper\GL11150-PA | 210 | GL11150-PA | 10..204 | 15..205 | 211 | 28.4 | Plus |
Dper\GL11148-PA | 218 | GL11148-PA | 1..218 | 1..208 | 204 | 29.7 | Plus |
Dper\GL11133-PA | 226 | GL11133-PA | 48..226 | 37..208 | 198 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24625-PA | 208 | GA24625-PA | 1..208 | 1..208 | 945 | 82.7 | Plus |
Dpse\GA11846-PA | 217 | GA11846-PA | 1..217 | 1..208 | 246 | 31.2 | Plus |
Dpse\GA11845-PA | 218 | GA11845-PA | 1..218 | 1..208 | 204 | 29.7 | Plus |
Dpse\GA15095-PA | 226 | GA15095-PA | 48..226 | 37..208 | 198 | 30.4 | Plus |
Dpse\GA10076-PA | 228 | GA10076-PA | 24..228 | 14..208 | 197 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20925-PA | 208 | GM20925-PA | 1..208 | 1..208 | 1064 | 97.6 | Plus |
Dsec\GM20924-PA | 217 | GM20924-PA | 1..217 | 1..208 | 245 | 31.5 | Plus |
Dsec\GM20926-PA | 218 | GM20926-PA | 1..218 | 1..208 | 202 | 29.7 | Plus |
Dsec\GM20823-PA | 219 | GM20823-PA | 1..215 | 1..205 | 191 | 28.6 | Plus |
Dsec\GM20918-PA | 231 | GM20918-PA | 1..229 | 1..208 | 189 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15337-PA | 188 | GD15337-PA | 2..188 | 22..208 | 954 | 97.3 | Plus |
Dsim\GD10455-PA | 211 | GD10455-PA | 1..208 | 1..205 | 232 | 30 | Plus |
Dsim\GD10452-PA | 217 | GD10452-PA | 1..217 | 1..208 | 218 | 32.4 | Plus |
Dsim\GD10276-PA | 219 | GD10276-PA | 1..215 | 1..205 | 193 | 28.6 | Plus |
Dsim\GD10445-PA | 225 | GD10445-PA | 3..225 | 4..208 | 178 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15138-PA | 208 | GJ15138-PA | 1..208 | 1..208 | 878 | 76.4 | Plus |
Dvir\GJ15141-PA | 220 | GJ15141-PA | 1..220 | 1..208 | 233 | 32.1 | Plus |
Dvir\GJ15137-PA | 217 | GJ15137-PA | 1..217 | 1..208 | 214 | 31.7 | Plus |
Dvir\GJ15139-PA | 218 | GJ15139-PA | 1..218 | 1..208 | 207 | 29.1 | Plus |
Dvir\GJ14948-PA | 219 | GJ14948-PA | 1..215 | 1..205 | 204 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21784-PA | 208 | GK21784-PA | 1..208 | 1..208 | 888 | 78.8 | Plus |
Dwil\GK21783-PA | 217 | GK21783-PA | 1..217 | 1..208 | 278 | 32 | Plus |
Dwil\GK21787-PA | 215 | GK21787-PA | 1..215 | 1..208 | 232 | 30.9 | Plus |
Dwil\GK21785-PA | 218 | GK21785-PA | 55..218 | 50..208 | 205 | 31.7 | Plus |
Dwil\GK21531-PA | 219 | GK21531-PA | 1..215 | 1..205 | 190 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19102-PA | 208 | GE19102-PA | 1..208 | 1..208 | 1062 | 97.1 | Plus |
Dyak\GE19105-PA | 211 | GE19105-PA | 1..208 | 1..205 | 229 | 29.6 | Plus |
Dyak\GE24235-PA | 219 | GE24235-PA | 1..215 | 1..205 | 211 | 30 | Plus |
Dyak\GE19101-PA | 217 | GE19101-PA | 1..217 | 1..208 | 206 | 31 | Plus |
Dyak\GE19103-PA | 218 | GE19103-PA | 1..218 | 1..208 | 200 | 30 | Plus |
Translation from 180 to 806
> RE57845.hyp MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK NKQRRMEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lbm-PB | 208 | CG2374-PB | 1..208 | 1..208 | 1053 | 100 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..208 | 1053 | 100 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..208 | 257 | 32 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..208 | 243 | 31.7 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..208 | 243 | 31.7 | Plus |