BDGP Sequence Production Resources |
Search the DGRC for RE57896
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 578 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bcn92-RA |
Protein status: | RE57896.pep: gold |
Preliminary Size: | 279 |
Sequenced Size: | 705 |
Gene | Date | Evidence |
---|---|---|
CG3717 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3717 | 2003-01-01 | Sim4 clustering to Release 3 |
bcn92 | 2008-04-29 | Release 5.5 accounting |
bcn92 | 2008-08-15 | Release 5.9 accounting |
bcn92 | 2008-12-18 | 5.12 accounting |
705 bp (705 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071542
> RE57896.complete AAAAACAAGAAACCAGGGTCAAAACAAAGCACTCATCAATTAAACAGCAC TTTAATCCACCAGCCCGCCCGCCATTCAGTTCCATTCGGCCAGGATCAAG ACCAGGATGTCGACCCGTCGCCAGGCGATCACGTTATACAGGAATCTCCT GCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATGTACGCTGCCC GAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAGGGACTTCGCG GAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGGAGCTGATACG TCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAACTGGTTATAG AGAACAAGAAGACCCTGAAGCCCTCGGACGACTAAGGGAAATACGGAGCG AAAAACGCGCTAGCTGAAGAGAGTACAATAGCAGGGAAGGAGCGGTAGAA GGAGCAGGAGGCGTCTCCAGATGAAGACACAACTCGAAAGACTCGACCCA CACACAACACAACACACCAAACCACACGCATTGTTGATTTTAAATGGCAC TTGCATTCATGAAACTAAGGAATCAAAATCATTTGCTAGCAAAAAAAACA CCAATTTAATGTTATGTTTAACAACAATTATGAAATTCTATATACATACA TATATATTAATGGTATAAATAAGTACTAAAGTACTCCAGAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2042392..2042775 | 689..305 | 1875 | 99.7 | Minus |
chrX | 22417052 | chrX | 2043331..2043514 | 186..3 | 920 | 100 | Minus |
chrX | 22417052 | chrX | 2043148..2043275 | 309..182 | 640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3912..4024 | 567..684 | 154 | 63.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2042392..2042772 | 308..689 | 99 | <- | Minus |
chrX | 2043150..2043270 | 187..307 | 100 | <- | Minus |
chrX | 2043331..2043514 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 1..279 | 107..385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 1..279 | 107..385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 1..279 | 107..385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 1..279 | 107..385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 1..279 | 107..385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 14..701 | 1..689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 14..701 | 1..689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 61..748 | 1..689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 14..701 | 1..689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bcn92-RA | 61..748 | 1..689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2148463..2148843 | 308..689 | 99 | <- | Minus |
X | 2149221..2149341 | 187..307 | 100 | <- | Minus |
X | 2149402..2149585 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2148463..2148843 | 308..689 | 99 | <- | Minus |
X | 2149221..2149341 | 187..307 | 100 | <- | Minus |
X | 2149402..2149585 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2148463..2148843 | 308..689 | 99 | <- | Minus |
X | 2149221..2149341 | 187..307 | 100 | <- | Minus |
X | 2149402..2149585 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2042496..2042876 | 308..689 | 99 | <- | Minus |
arm_X | 2043254..2043374 | 187..307 | 100 | <- | Minus |
arm_X | 2043435..2043618 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2156561..2156941 | 308..689 | 99 | <- | Minus |
X | 2157319..2157439 | 187..307 | 100 | <- | Minus |
X | 2157500..2157683 | 1..186 | 98 | Minus |
Translation from 3 to 335
> RE57896.hyp NKKPGSKQSTHQLNSTLIHQPARHSVPFGQDQDQDVDPSPGDHVIQESPA RIGEAALVQLQNVRCPKNTRHIPRQQEHQGLRGDRSPNGRGPTESGADTS PGNHRPPVFR*
Translation from 106 to 384
> RE57896.pep MSTRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEI DRQMAEGQQNLELIRRQVIIGHLYSADKLVIENKKTLKPSDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20805-PA | 92 | GF20805-PA | 1..92 | 1..92 | 435 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12648-PA | 92 | GG12648-PA | 1..92 | 1..92 | 473 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24400-PA | 92 | GH24400-PA | 1..92 | 1..92 | 417 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bcn92-PA | 92 | CG3717-PA | 1..92 | 1..92 | 460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11059-PA | 92 | GI11059-PA | 1..92 | 1..92 | 400 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14467-PA | 92 | GL14467-PA | 1..92 | 1..92 | 415 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17638-PA | 92 | GA17638-PA | 1..92 | 1..92 | 422 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18915-PA | 92 | GM18915-PA | 1..92 | 1..92 | 473 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16390-PA | 92 | GD16390-PA | 1..92 | 1..92 | 473 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16510-PA | 92 | GJ16510-PA | 1..92 | 1..92 | 402 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24926-PA | 92 | GK24926-PA | 1..92 | 1..92 | 407 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16975-PA | 92 | GE16975-PA | 1..92 | 1..92 | 466 | 97.8 | Plus |