Clone RE58036 Report

Search the DGRC for RE58036

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:580
Well:36
Vector:pFlc-1
Associated Gene/TranscriptCG9368-RA
Protein status:RE58036.pep: gold
Sequenced Size:1800

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9368-RA 2010-11-11 Gleaning Pick By Joe Carlson
CG9368 2011-03-01 Transcript Validation

Clone Sequence Records

RE58036.complete Sequence

1800 bp assembled on 2011-03-14

GenBank Submission: BT126136.1

> RE58036.complete
GGTAGATACCCATCGCAGGACAAAGGCAAAGCTCGAAACGCTTCTGGCAG
CATTTTCAAAGGATAAAAAGGAATTCTCACAAAAACCCAGGAAAGATGCA
TGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGACAGCGTTGATGGAA
TCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTTCAAGCAAAATCCC
CAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATGTGCTCCTGCGGGC
TGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAGAAATCGCAACAGG
GCAAGGAAAAACGACCGAGTTTCGCCATACCAGATTTTAAGAACGGCAAG
GTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGCCATATG
CAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCAAGCTGA
GAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGCGGAGCC
AGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAACCCTAGT
CCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGGGAGTCA
GCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACTAAGCTAGC
TATAATGGACAATGGTTGTCCATGCAATGGGAAAACATAATCAAAATTAC
CACCAACCCCTTCCTGAACAATGAACTCTTACTCAGCAATCGTCTACTGT
CATCTTACCACCTTAATGGATCCTGTCCAGAAGCATTTTCTTCGCTCAAA
CGTCTTAGGCACAAACCAAATTCTACGTCTTCCCCTTGAAGACCACCAAG
TTTATGGTGTAAGCCCTGCAAAGGAATCTTAAAATCGCATAGAACAGGGC
TGATGGAAAAGCTTTAGCTCTCTACTATATTGTTTGATATACCCAAATGT
GATCCCAGATCGTAATGTTAACGAAAACTCAACTCGAAGCACAAGCAACT
CTTCTAGGCTAGTTATGAAAGGAGAAAACCCCTATATACGACATTTGTAT
ACACTCTCCAGCTCTCAGACATTATTTGGTCCCCACGCACAACACAATCA
ACGGCATTACACAATCCCAGTGGAATCGACGAGGGTTTGCCCCGAATCTC
CACCTAATTATAACTACGATATATCAAATTATATACCTAACTATATGTGT
ATGTGTATGACTATAGTTGTCTACGGAACCACCAACCTATTTAGATGTGT
GTGTGTAGCAGTTAAAAGTATTTCCAAACCAAACCAAAGCAGCTAACAAC
AAACGGTTCAATATACAAGCATTAATGTGTACTGATTTTATATACAATGT
ACTAACTACTATATATACGTGTGAATGTCATTAGACTCTTAGTTGTTTAC
ACAGGTTTCCTCGAACATCCTCATCAAATTCATCAACTAATCCGCACACA
CGCTCTAATCGGATATATTTTTGTGAGACCCTTTTTGGAGAGATCTACAT
ACATATATAAAGACACTACTCCTATACCGAAACCGAAATTTAAGATATCG
ATTACTCTCGATTACAGAGAACTTTGTACGCAGATTTGCAAGGCAACCAT
TTTGTATAAGATTTGCATTTATTTTGTAACCTCTTGAATGCAAAGATCTC
CCTAAGTTTGAATGCATTGCTAAGCCAATTGGATGTTTATCGATTACAAA
ATGTATAAGTATGCGTTATGCAAACATAAAACCGTTGTATTTAGTTAATA
ATATCAGCAATAAACTATAACATGTTTGAAATCAAAAAAAAAAAAAAAAA

RE58036.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19592037..19593501 319..1783 7220 99.5 Plus
chr3L 24539361 chr3L 19591060..19591358 2..300 1495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602656..19604122 319..1785 7335 100 Plus
3L 28110227 3L 19601679..19601977 2..300 1495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19595756..19597222 319..1785 7335 100 Plus
3L 28103327 3L 19594779..19595077 2..300 1495 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:26:18 has no hits.

RE58036.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:27:11 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19591059..19591357 1..299 99 -> Plus
chr3L 19591423..19591441 300..318 100 -> Plus
chr3L 19592037..19593501 319..1783 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-14 09:57:33 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 1..549 96..644 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:55:34 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 1..549 96..644 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:27:55 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 1..549 96..644 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:57:33 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 24..1806 1..1783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:55:34 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 46..1828 1..1783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:55 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RA 46..1828 1..1783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:11 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601678..19601976 1..299 99 -> Plus
3L 19602042..19602060 300..318 100 -> Plus
3L 19602656..19604120 319..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:11 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601678..19601976 1..299 99 -> Plus
3L 19602042..19602060 300..318 100 -> Plus
3L 19602656..19604120 319..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:11 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601678..19601976 1..299 99 -> Plus
3L 19602042..19602060 300..318 100 -> Plus
3L 19602656..19604120 319..1783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:55:34 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594778..19595076 1..299 99 -> Plus
arm_3L 19595142..19595160 300..318 100 -> Plus
arm_3L 19595756..19597220 319..1783 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:29 Download gff for RE58036.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19594778..19595076 1..299 99 -> Plus
3L 19595142..19595160 300..318 100 -> Plus
3L 19595756..19597220 319..1783 100   Plus

RE58036.hyp Sequence

Translation from 95 to 643

> RE58036.hyp
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA
ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET
LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMD*

RE58036.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PA 182 CG9368-PA 1..182 1..182 929 100 Plus
CG9368-PB 177 CG9368-PB 1..177 1..182 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 373 100 Plus

RE58036.pep Sequence

Translation from 95 to 643

> RE58036.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA
ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET
LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMD*

RE58036.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23709-PA 177 GF23709-PA 1..177 1..182 695 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16047-PA 181 GG16047-PA 1..181 1..182 718 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16938-PA 174 GH16938-PA 1..174 1..182 644 76.5 Plus
Dgri\GH23894-PA 103 GH23894-PA 3..103 74..182 327 72.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PA 182 CG9368-PA 1..182 1..182 929 100 Plus
CG9368-PB 177 CG9368-PB 1..177 1..182 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 373 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11799-PA 173 GI11799-PA 1..173 1..182 574 76 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20946-PA 176 GL20946-PA 1..176 1..182 590 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21735-PA 176 GA21735-PA 1..176 1..182 590 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19607-PA 172 GM19607-PA 1..172 1..182 844 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14816-PA 193 GD14816-PA 1..193 1..182 659 83.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13503-PA 169 GJ13503-PA 1..169 1..182 591 74.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19166-PA 178 GK19166-PA 1..178 1..182 404 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23212-PA 174 GE23212-PA 1..174 1..182 851 93.4 Plus
Dyak\GE19613-PA 174 GE19613-PA 1..174 1..182 851 93.4 Plus