BDGP Sequence Production Resources |
Search the DGRC for RE58036
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 580 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9368-RA |
Protein status: | RE58036.pep: gold |
Sequenced Size: | 1800 |
Gene | Date | Evidence |
---|---|---|
CG9368-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
CG9368 | 2011-03-01 | Transcript Validation |
1800 bp assembled on 2011-03-14
GenBank Submission: BT126136.1
> RE58036.complete GGTAGATACCCATCGCAGGACAAAGGCAAAGCTCGAAACGCTTCTGGCAG CATTTTCAAAGGATAAAAAGGAATTCTCACAAAAACCCAGGAAAGATGCA TGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGACAGCGTTGATGGAA TCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTTCAAGCAAAATCCC CAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATGTGCTCCTGCGGGC TGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAGAAATCGCAACAGG GCAAGGAAAAACGACCGAGTTTCGCCATACCAGATTTTAAGAACGGCAAG GTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGCCATATG CAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCAAGCTGA GAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGCGGAGCC AGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAACCCTAGT CCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGGGAGTCA GCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACTAAGCTAGC TATAATGGACAATGGTTGTCCATGCAATGGGAAAACATAATCAAAATTAC CACCAACCCCTTCCTGAACAATGAACTCTTACTCAGCAATCGTCTACTGT CATCTTACCACCTTAATGGATCCTGTCCAGAAGCATTTTCTTCGCTCAAA CGTCTTAGGCACAAACCAAATTCTACGTCTTCCCCTTGAAGACCACCAAG TTTATGGTGTAAGCCCTGCAAAGGAATCTTAAAATCGCATAGAACAGGGC TGATGGAAAAGCTTTAGCTCTCTACTATATTGTTTGATATACCCAAATGT GATCCCAGATCGTAATGTTAACGAAAACTCAACTCGAAGCACAAGCAACT CTTCTAGGCTAGTTATGAAAGGAGAAAACCCCTATATACGACATTTGTAT ACACTCTCCAGCTCTCAGACATTATTTGGTCCCCACGCACAACACAATCA ACGGCATTACACAATCCCAGTGGAATCGACGAGGGTTTGCCCCGAATCTC CACCTAATTATAACTACGATATATCAAATTATATACCTAACTATATGTGT ATGTGTATGACTATAGTTGTCTACGGAACCACCAACCTATTTAGATGTGT GTGTGTAGCAGTTAAAAGTATTTCCAAACCAAACCAAAGCAGCTAACAAC AAACGGTTCAATATACAAGCATTAATGTGTACTGATTTTATATACAATGT ACTAACTACTATATATACGTGTGAATGTCATTAGACTCTTAGTTGTTTAC ACAGGTTTCCTCGAACATCCTCATCAAATTCATCAACTAATCCGCACACA CGCTCTAATCGGATATATTTTTGTGAGACCCTTTTTGGAGAGATCTACAT ACATATATAAAGACACTACTCCTATACCGAAACCGAAATTTAAGATATCG ATTACTCTCGATTACAGAGAACTTTGTACGCAGATTTGCAAGGCAACCAT TTTGTATAAGATTTGCATTTATTTTGTAACCTCTTGAATGCAAAGATCTC CCTAAGTTTGAATGCATTGCTAAGCCAATTGGATGTTTATCGATTACAAA ATGTATAAGTATGCGTTATGCAAACATAAAACCGTTGTATTTAGTTAATA ATATCAGCAATAAACTATAACATGTTTGAAATCAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19591059..19591357 | 1..299 | 99 | -> | Plus |
chr3L | 19591423..19591441 | 300..318 | 100 | -> | Plus |
chr3L | 19592037..19593501 | 319..1783 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 1..549 | 96..644 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 1..549 | 96..644 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 1..549 | 96..644 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 24..1806 | 1..1783 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 46..1828 | 1..1783 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9368-RA | 46..1828 | 1..1783 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19601678..19601976 | 1..299 | 99 | -> | Plus |
3L | 19602042..19602060 | 300..318 | 100 | -> | Plus |
3L | 19602656..19604120 | 319..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19601678..19601976 | 1..299 | 99 | -> | Plus |
3L | 19602042..19602060 | 300..318 | 100 | -> | Plus |
3L | 19602656..19604120 | 319..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19601678..19601976 | 1..299 | 99 | -> | Plus |
3L | 19602042..19602060 | 300..318 | 100 | -> | Plus |
3L | 19602656..19604120 | 319..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19594778..19595076 | 1..299 | 99 | -> | Plus |
arm_3L | 19595142..19595160 | 300..318 | 100 | -> | Plus |
arm_3L | 19595756..19597220 | 319..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19594778..19595076 | 1..299 | 99 | -> | Plus |
3L | 19595142..19595160 | 300..318 | 100 | -> | Plus |
3L | 19595756..19597220 | 319..1783 | 100 | Plus |
Translation from 95 to 643
> RE58036.hyp MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMD*
Translation from 95 to 643
> RE58036.pep MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23709-PA | 177 | GF23709-PA | 1..177 | 1..182 | 695 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16047-PA | 181 | GG16047-PA | 1..181 | 1..182 | 718 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16938-PA | 174 | GH16938-PA | 1..174 | 1..182 | 644 | 76.5 | Plus |
Dgri\GH23894-PA | 103 | GH23894-PA | 3..103 | 74..182 | 327 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9368-PA | 182 | CG9368-PA | 1..182 | 1..182 | 929 | 100 | Plus |
CG9368-PB | 177 | CG9368-PB | 1..177 | 1..182 | 883 | 96.7 | Plus |
CG9368-PD | 87 | CG9368-PD | 1..75 | 1..75 | 373 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11799-PA | 173 | GI11799-PA | 1..173 | 1..182 | 574 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20946-PA | 176 | GL20946-PA | 1..176 | 1..182 | 590 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21735-PA | 176 | GA21735-PA | 1..176 | 1..182 | 590 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19607-PA | 172 | GM19607-PA | 1..172 | 1..182 | 844 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14816-PA | 193 | GD14816-PA | 1..193 | 1..182 | 659 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13503-PA | 169 | GJ13503-PA | 1..169 | 1..182 | 591 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19166-PA | 178 | GK19166-PA | 1..178 | 1..182 | 404 | 66.8 | Plus |