Clone RE58223 Report

Search the DGRC for RE58223

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:582
Well:23
Vector:pFlc-1
Associated Gene/TranscriptCG2663-RA
Protein status:RE58223.pep: gold
Preliminary Size:1041
Sequenced Size:1650

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2663 2002-10-09 Blastp of sequenced clone
CG2663 2003-01-01 Sim4 clustering to Release 3
CG2663 2008-04-29 Release 5.5 accounting
CG2663 2008-08-15 Release 5.9 accounting
CG2663 2008-12-18 5.12 accounting

Clone Sequence Records

RE58223.complete Sequence

1650 bp (1650 high quality bases) assembled on 2002-10-09

GenBank Submission: BT001686

> RE58223.complete
AGTTTCCGTTATCGTCTTGAGCGCTTCGGTTGTGTGCTATTAATTATACG
CCGCGTTGTCCGTTGCATACACTGCATAAAGGATTACCTCTGACCTAATC
TAATCATCTCATTCTAACCAAGACAGACAAAAGAAGTTGAGGATTTCTGC
GATCCAACGACCAGCAATCAATTTGACAAGGAGACAATAACTTCACTTGA
AATTGTGCGAATAACTCAATTTGAATGGCAGCAAACAATGAAGAAGGCCG
TGTATTCGGCCCAACAATGTTTGATTTAAATAATTTTGAGGTGGATTCCT
TACGAAACAGAGTTCATTGATCGAAGAGTAATTCTGGAATAATTAATGCA
GTTTGCATAGAATAGATTAAAGTAAACAGAATGACACTAAAGTGATAGAA
GTGAATCAAATTAGAATTTGGTTACGTTCATTTCCTTAGCACGGTGTTTT
ATATTCTTCATGAGTGCACATACAGTTGCGATGATGATGCTACACCCCAC
ACCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCGGAGGACC
CCGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCTGGAGACA
CAGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGACCTTCCT
GCGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTGGACATGT
ACTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCGGGACATC
AATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCCCGACTCT
CCCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGGGGTATCG
ATTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGTGGCCCTG
ATGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCGCCGGCGA
CATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTCGCCAAGT
TCTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGAGGCCTAT
CCCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGCTGGTGGA
CACTATCTTCAACTTTGTGAAGCCGTTCGTGAAGGAGAAGATCCGCAGCC
GCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGTGCCCCGT
GACCTCCTGCCCAACGAGTACGGCGGCAAGGCCGGCGGCGTCGTCGAGCT
GAACCAGTGGTGGAAGCAGAAGCTGGTCGACAACACCCAGTGGTTCAAGG
ACCAGGAGGACAAGAAGGCGAACGAGTCCCTTCGCCCCGGCGCTCCCAAG
ACCAGCGATGACCTCTTCGGCATGGAGGGCACCTTCCGGCAGCTGAACAT
CGACTAGGCGTGAAAGGAGCCGCCAGGATTCGGGATTCAGCATCCAAGAT
CCTGATCCTGCGACCTTATCCCAGCTTGTCTAACCGTTAATATCAGCCGC
TCATTTGTTTAGTCCAAGCTCGTGTGCATGACCCTTGCTTAGTTGCTTCA
TTCTTTCGCCAGAACCCATTGCTAATCTATCGTATATCACCAGTACATTG
CAGTAATTACAATAATAAAGAACCAGCGTATTAAGAAAAAAAAAAAAAAA

RE58223.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RB 1639 CG2663-RB 5..1639 1..1635 8175 100 Plus
CG2663-RA 1447 CG2663-RA 181..1336 480..1635 5780 100 Plus
CG2663-RA 1447 CG2663-RA 60..182 1..123 615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1226253..1227102 1635..786 4250 100 Minus
chr3R 27901430 chr3R 1229175..1229534 480..121 1800 100 Minus
chr3R 27901430 chr3R 1227165..1227471 786..480 1535 100 Minus
chr3R 27901430 chr3R 1229663..1229784 122..1 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5400594..5401443 1635..786 4250 100 Minus
3R 32079331 3R 5403516..5403875 480..121 1800 100 Minus
3R 32079331 3R 5401506..5401812 786..480 1535 100 Minus
3R 32079331 3R 5404004..5404125 122..1 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5141425..5142274 1635..786 4250 100 Minus
3R 31820162 3R 5144347..5144706 480..121 1800 100 Minus
3R 31820162 3R 5142337..5142643 786..480 1535 100 Minus
3R 31820162 3R 5144835..5144956 122..1 610 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:40:15 has no hits.

RE58223.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:56 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1226253..1227102 786..1635 100 <- Minus
chr3R 1227166..1227470 481..785 100 <- Minus
chr3R 1229175..1229532 123..480 100 <- Minus
chr3R 1229663..1229784 1..122 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:11 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 1..948 460..1407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:21 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 1..948 460..1407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:43:02 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 1..948 460..1407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:14 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 1..948 460..1407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:58 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RA 1..927 481..1407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:34:34 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 5..1639 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:21 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 5..1639 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:43:02 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 5..1639 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:14 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 5..1639 1..1635 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:58 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RC 11..1645 1..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:56 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5400594..5401443 786..1635 100 <- Minus
3R 5401507..5401811 481..785 100 <- Minus
3R 5403516..5403873 123..480 100 <- Minus
3R 5404004..5404125 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:56 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5400594..5401443 786..1635 100 <- Minus
3R 5401507..5401811 481..785 100 <- Minus
3R 5403516..5403873 123..480 100 <- Minus
3R 5404004..5404125 1..122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:56 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5400594..5401443 786..1635 100 <- Minus
3R 5401507..5401811 481..785 100 <- Minus
3R 5403516..5403873 123..480 100 <- Minus
3R 5404004..5404125 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:43:02 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1226316..1227165 786..1635 100 <- Minus
arm_3R 1227229..1227533 481..785 100 <- Minus
arm_3R 1229238..1229595 123..480 100 <- Minus
arm_3R 1229726..1229847 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:56 Download gff for RE58223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5141425..5142274 786..1635 100 <- Minus
3R 5142338..5142642 481..785 100 <- Minus
3R 5144347..5144704 123..480 100 <- Minus
3R 5144835..5144956 1..122 100   Minus

RE58223.pep Sequence

Translation from 459 to 1406

> RE58223.pep
MSAHTVAMMMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPH
LPKDMDDMRLTTFLRGCKFSLEKVKKKLDMYYTMRNAVPEFFSNRDINRE
ELNIVLDYVHCPTLPGITPNGRRITFIRGIDCDFQPHHILDAMKVALMIG
DVRLAEESVGIAGDIFILDASVASAAHFAKFSPTVVKKFLIAVQEAYPVK
VKEVHVINISPLVDTIFNFVKPFVKEKIRSRITFHNDVESLYKVVPRDLL
PNEYGGKAGGVVELNQWWKQKLVDNTQWFKDQEDKKANESLRPGAPKTSD
DLFGMEGTFRQLNID*

RE58223.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17713-PA 308 GF17713-PA 1..308 8..315 1627 98.1 Plus
Dana\GF25066-PA 311 GF25066-PA 9..311 14..315 528 36.8 Plus
Dana\GF12489-PA 311 GF12489-PA 24..311 29..315 503 36.3 Plus
Dana\GF24441-PA 310 GF24441-PA 21..310 29..315 484 34.8 Plus
Dana\GF12490-PA 308 GF12490-PA 1..308 8..315 464 34.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11035-PA 308 GG11035-PA 1..308 8..315 1638 99.4 Plus
Dere\GG25270-PA 313 GG25270-PA 26..313 29..315 528 38.1 Plus
Dere\GG15223-PA 311 GG15223-PA 9..311 14..315 523 36.2 Plus
Dere\GG14766-PA 324 GG14766-PA 22..324 14..315 499 34.8 Plus
Dere\GG23602-PA 313 GG23602-PA 21..313 29..315 444 33.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22617-PA 308 GH22617-PA 1..308 8..315 1604 97.1 Plus
Dgri\GH15199-PA 308 GH15199-PA 22..308 29..315 527 35.8 Plus
Dgri\GH22856-PA 316 GH22856-PA 19..316 19..315 523 35.6 Plus
Dgri\GH15439-PA 324 GH15439-PA 35..324 29..315 506 36.2 Plus
Dgri\GH18936-PA 298 GH18936-PA 22..298 38..315 472 34.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-PC 308 CG2663-PC 1..308 8..315 1618 100 Plus
CG2663-PA 308 CG2663-PA 1..308 8..315 1618 100 Plus
CG12926-PA 313 CG12926-PA 26..313 29..315 510 37.4 Plus
CG33966-PA 310 CG33966-PA 8..310 14..315 505 35.1 Plus
CG33514-PA 311 CG33514-PA 9..311 14..315 496 35.2 Plus
CG11550-PA 298 CG11550-PA 15..298 24..315 441 32.4 Plus
CG30339-PA 308 CG30339-PA 1..308 8..315 441 34.1 Plus
CG31636-PB 313 CG31636-PB 12..313 17..315 437 34.2 Plus
CG31636-PA 313 CG31636-PA 12..313 17..315 437 34.2 Plus
CG33965-PA 317 CG33965-PA 9..317 11..315 420 32.7 Plus
CG10300-PA 311 CG10300-PA 22..311 29..315 398 30 Plus
CG3091-PC 303 CG3091-PC 32..287 44..282 385 32.4 Plus
CG3091-PA 303 CG3091-PA 32..287 44..282 385 32.4 Plus
CG3823-PA 295 CG3823-PA 20..295 41..315 384 32 Plus
CG3191-PC 309 CG3191-PC 35..303 35..290 336 28.3 Plus
CG3191-PA 309 CG3191-PA 35..303 35..290 336 28.3 Plus
CG10657-PA 334 CG10657-PA 32..334 14..315 289 27.1 Plus
CG1902-PC 312 CG1902-PC 21..312 29..315 279 24.7 Plus
CG1902-PA 312 CG1902-PA 21..312 29..315 279 24.7 Plus
CG10301-PB 306 CG10301-PB 19..306 29..315 275 27.6 Plus
Cralbp-PA 324 CG10546-PA 20..324 22..315 252 24.7 Plus
CG10237-PD 301 CG10237-PD 16..290 4..278 241 26.5 Plus
CG10237-PA 301 CG10237-PA 16..290 4..278 241 26.5 Plus
CG10237-PE 306 CG10237-PE 21..295 4..278 241 26.5 Plus
CG10237-PC 306 CG10237-PC 21..295 4..278 241 26.5 Plus
CG10237-PB 324 CG10237-PB 39..313 4..278 241 26.5 Plus
pinta-PB 273 CG13848-PB 18..270 30..287 230 29.2 Plus
pinta-PA 273 CG13848-PA 18..270 30..287 230 29.2 Plus
CG5958-PA 294 CG5958-PA 27..285 22..281 225 28.3 Plus
CG5973-PF 311 CG5973-PF 40..274 22..258 224 28.3 Plus
CG5973-PE 311 CG5973-PE 40..274 22..258 224 28.3 Plus
CG5973-PG 311 CG5973-PG 40..274 22..258 224 28.3 Plus
CG5973-PD 311 CG5973-PD 40..274 22..258 224 28.3 Plus
CG5973-PC 311 CG5973-PC 40..274 22..258 224 28.3 Plus
CG5973-PB 311 CG5973-PB 40..274 22..258 224 28.3 Plus
CG5973-PA 311 CG5973-PA 40..274 22..258 224 28.3 Plus
CG10026-PD 290 CG10026-PD 2..255 13..256 179 24.1 Plus
CG10026-PC 290 CG10026-PC 2..255 13..256 179 24.1 Plus
CG10026-PA 290 CG10026-PA 2..255 13..256 179 24.1 Plus
CG10026-PB 299 CG10026-PB 11..264 13..256 179 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23644-PA 308 GI23644-PA 1..308 8..315 1597 95.8 Plus
Dmoj\GI16717-PA 308 GI16717-PA 19..308 26..315 513 38.1 Plus
Dmoj\GI21233-PA 313 GI21233-PA 34..313 37..315 511 37.1 Plus
Dmoj\GI13701-PA 312 GI13701-PA 13..312 17..315 465 35.3 Plus
Dmoj\GI21234-PA 308 GI21234-PA 21..308 29..315 455 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22169-PA 308 GL22169-PA 1..308 8..315 1511 92.9 Plus
Dper\GL17330-PA 311 GL17330-PA 11..311 14..315 502 35.9 Plus
Dper\GL16163-PA 311 GL16163-PA 22..311 29..315 492 35.5 Plus
Dper\GL23532-PA 298 GL23532-PA 26..298 43..315 473 34.7 Plus
Dper\GL17331-PA 308 GL17331-PA 1..308 8..315 446 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15415-PA 308 GA15415-PA 1..308 8..315 1511 92.9 Plus
Dpse\GA11913-PA 311 GA11913-PA 11..311 14..315 502 36.2 Plus
Dpse\GA28527-PA 311 GA28527-PA 9..311 14..315 493 34.9 Plus
Dpse\GA28411-PA 311 GA28411-PA 22..311 29..315 492 35.5 Plus
Dpse\GA11062-PA 298 GA11062-PA 20..298 37..315 474 34.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10638-PA 308 GM10638-PA 1..308 8..315 1644 99.7 Plus
Dsec\GM20588-PA 313 GM20588-PA 26..313 29..315 523 37.4 Plus
Dsec\GM14655-PA 311 GM14655-PA 9..311 14..315 512 35.5 Plus
Dsec\GM20589-PA 308 GM20589-PA 1..308 8..315 456 34.8 Plus
Dsec\GM16424-PA 298 GM16424-PA 26..298 43..315 452 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19620-PA 308 GD19620-PA 1..308 8..315 1644 99.7 Plus
Dsim\GD13840-PA 311 GD13840-PA 9..311 14..315 521 36.2 Plus
Dsim\GD10061-PA 308 GD10061-PA 1..308 8..315 458 35.8 Plus
Dsim\GD16370-PA 298 GD16370-PA 22..298 38..315 452 33.3 Plus
Dsim\GD22558-PA 313 GD22558-PA 12..313 17..315 447 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24720-PA 307 GJ24720-PA 1..307 9..315 1602 96.7 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 19..316 19..315 518 35.2 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 22..308 29..315 512 37.8 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 21..310 29..315 496 34.8 Plus
Dvir\GJ20839-PA 312 GJ20839-PA 33..312 37..315 465 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22841-PA 306 GK22841-PA 1..306 10..315 1595 96.4 Plus
Dwil\GK15622-PA 313 GK15622-PA 26..313 29..315 514 37.2 Plus
Dwil\GK11682-PA 311 GK11682-PA 9..311 14..315 507 37.1 Plus
Dwil\GK21135-PA 310 GK21135-PA 21..310 29..315 501 35.5 Plus
Dwil\GK15623-PA 309 GK15623-PA 30..309 37..315 490 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25285-PA 308 GE25285-PA 1..308 8..315 1645 100 Plus
Dyak\GE22148-PA 313 GE22148-PA 26..313 29..315 521 37.4 Plus
Dyak\GE21443-PA 311 GE21443-PA 9..311 14..315 512 35.5 Plus
Dyak\GE21129-PA 310 GE21129-PA 21..310 29..315 497 35.2 Plus
Dyak\GE22159-PA 308 GE22159-PA 1..308 8..315 444 33.4 Plus

RE58223.hyp Sequence

Translation from 459 to 1406

> RE58223.hyp
MSAHTVAMMMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPH
LPKDMDDMRLTTFLRGCKFSLEKVKKKLDMYYTMRNAVPEFFSNRDINRE
ELNIVLDYVHCPTLPGITPNGRRITFIRGIDCDFQPHHILDAMKVALMIG
DVRLAEESVGIAGDIFILDASVASAAHFAKFSPTVVKKFLIAVQEAYPVK
VKEVHVINISPLVDTIFNFVKPFVKEKIRSRITFHNDVESLYKVVPRDLL
PNEYGGKAGGVVELNQWWKQKLVDNTQWFKDQEDKKANESLRPGAPKTSD
DLFGMEGTFRQLNID*

RE58223.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-PC 308 CG2663-PC 1..308 8..315 1618 100 Plus
CG2663-PA 308 CG2663-PA 1..308 8..315 1618 100 Plus
CG12926-PA 313 CG12926-PA 26..313 29..315 510 37.4 Plus
CG33966-PA 310 CG33966-PA 8..310 14..315 505 35.1 Plus
CG33514-PA 311 CG33514-PA 9..311 14..315 496 35.2 Plus