BDGP Sequence Production Resources |
Search the DGRC for RE58310
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 583 |
Well: | 10 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3814-RA |
Protein status: | RE58310.pep: gold |
Sequenced Size: | 1082 |
Gene | Date | Evidence |
---|---|---|
CG3814 | 2004-07-13 | Blastp of sequenced clone |
CG3814 | 2008-04-29 | Release 5.5 accounting |
CG3814 | 2008-08-15 | Release 5.9 accounting |
CG3814 | 2008-12-18 | 5.12 accounting |
1082 bp (1082 high quality bases) assembled on 2004-07-13
GenBank Submission: BT015208
> RE58310.complete AGTTCGTGTGAATTCCAGCAGGGCGTAGCTATAAAATGTATCACTACCAG CAAGAGTAGAAGTGTGGGGCTGTGATAAGAGCCGGTAACCGGCTAATCTC AACTCATACGTCCATATGGGAACACCTAGAAAGGGCGATTCGGTTCCATT AAGCTGAAACACTAGCACGCTGCCGGCAGTCGGGCAAAGAGAGCACCGTA ACTTAAGTGACTAAAGTTTAGTCATAGCAATTTAGCCATGAGCAGCGACA ATCATTTTCAGTACGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGAC CAGAGCATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTG CCAATTGCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAG CTTCGCAGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTG GCCGTTCTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACG CCGTAAGACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGG AGTCGTTCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTC CTGATGGCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTT TGCCCTGCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGG CCTGTCTGGTGGTCTTCATCATTTTTGGTATAATCGCTATCTTCATACCG GGCAAGGTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTC CGTTTACTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGT ACTCCATCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTG GACATTATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCG CAATTAGACTGGTCATTATGATCCATAGCTTCTATTCCAGTTTTAGAAAT GTAACTTAATTTTATGTGCCCAGTGCCACCTTAGCCGGAAAGAAATACAA GACGACTAACTAATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3814-RA | 1347 | CG3814-RA | 142..1209 | 1..1068 | 5325 | 99.9 | Plus |
CG3814-RB | 1142 | CG3814-RB | 248..1051 | 265..1068 | 4005 | 99.8 | Plus |
Nmda1.a | 1668 | Nmda1.a | 699..988 | 652..941 | 400 | 75.8 | Plus |
CG3814-RB | 1142 | CG3814-RB | 171..224 | 1..54 | 270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8762465..8763079 | 1064..450 | 3015 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 8763561..8763773 | 265..53 | 1065 | 100 | Minus |
chr2R | 21145070 | chr2R | 8763140..8763243 | 451..348 | 520 | 100 | Minus |
chr2R | 21145070 | chr2R | 8763400..8763483 | 348..265 | 420 | 100 | Minus |
chr2R | 21145070 | chr2R | 8764970..8765315 | 941..596 | 410 | 74.6 | Minus |
chr3R | 27901430 | chr3R | 9977843..9977997 | 926..772 | 295 | 79.4 | Minus |
chr2R | 21145070 | chr2R | 8764071..8764124 | 54..1 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12875162..12875780 | 1068..450 | 3080 | 99.8 | Minus |
2R | 25286936 | 2R | 12876262..12876474 | 265..53 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 12875841..12875944 | 451..348 | 520 | 100 | Minus |
2R | 25286936 | 2R | 12876101..12876184 | 348..265 | 420 | 100 | Minus |
2R | 25286936 | 2R | 12877671..12878016 | 941..596 | 410 | 74.6 | Minus |
3R | 32079331 | 3R | 14152993..14153147 | 926..772 | 295 | 79.4 | Minus |
2R | 25286936 | 2R | 12876772..12876825 | 54..1 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12876361..12876979 | 1068..450 | 3080 | 99.8 | Minus |
2R | 25260384 | 2R | 12877461..12877673 | 265..53 | 1065 | 100 | Minus |
2R | 25260384 | 2R | 12877040..12877143 | 451..348 | 520 | 100 | Minus |
2R | 25260384 | 2R | 12877300..12877383 | 348..265 | 420 | 100 | Minus |
2R | 25260384 | 2R | 12878870..12879159 | 941..652 | 400 | 75.8 | Minus |
3R | 31820162 | 3R | 13893824..13893978 | 926..772 | 295 | 79.3 | Minus |
2R | 25260384 | 2R | 12877971..12878024 | 54..1 | 270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8762463..8763078 | 451..1066 | 99 | <- | Minus |
chr2R | 8763141..8763242 | 349..450 | 100 | <- | Minus |
chr2R | 8763400..8763482 | 266..348 | 100 | <- | Minus |
chr2R | 8763561..8763771 | 55..265 | 100 | <- | Minus |
chr2R | 8764071..8764124 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 1..720 | 238..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 1..720 | 238..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 1..720 | 238..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 1..720 | 238..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 1..720 | 238..957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 142..1206 | 1..1066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 142..1206 | 1..1066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 8..1072 | 1..1066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 142..1206 | 1..1066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3814-RA | 8..1072 | 1..1066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12875164..12875779 | 451..1066 | 99 | <- | Minus |
2R | 12875842..12875943 | 349..450 | 100 | <- | Minus |
2R | 12876101..12876183 | 266..348 | 100 | <- | Minus |
2R | 12876262..12876472 | 55..265 | 100 | <- | Minus |
2R | 12876772..12876825 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12875164..12875779 | 451..1066 | 99 | <- | Minus |
2R | 12875842..12875943 | 349..450 | 100 | <- | Minus |
2R | 12876101..12876183 | 266..348 | 100 | <- | Minus |
2R | 12876262..12876472 | 55..265 | 100 | <- | Minus |
2R | 12876772..12876825 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12875164..12875779 | 451..1066 | 99 | <- | Minus |
2R | 12875842..12875943 | 349..450 | 100 | <- | Minus |
2R | 12876101..12876183 | 266..348 | 100 | <- | Minus |
2R | 12876262..12876472 | 55..265 | 100 | <- | Minus |
2R | 12876772..12876825 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8762669..8763284 | 451..1066 | 99 | <- | Minus |
arm_2R | 8763347..8763448 | 349..450 | 100 | <- | Minus |
arm_2R | 8763606..8763688 | 266..348 | 100 | <- | Minus |
arm_2R | 8763767..8763977 | 55..265 | 100 | <- | Minus |
arm_2R | 8764277..8764330 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12876363..12876978 | 451..1066 | 99 | <- | Minus |
2R | 12877041..12877142 | 349..450 | 100 | <- | Minus |
2R | 12877300..12877382 | 266..348 | 100 | <- | Minus |
2R | 12877461..12877671 | 55..265 | 100 | <- | Minus |
2R | 12877971..12878024 | 1..54 | 100 | Minus |
Translation from 237 to 956
> RE58310.pep MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11999-PA | 247 | GF11999-PA | 1..247 | 1..239 | 1165 | 91.1 | Plus |
Dana\GF11997-PA | 323 | GF11997-PA | 93..323 | 10..239 | 877 | 73.6 | Plus |
Dana\GF18785-PA | 255 | GF18785-PA | 27..253 | 11..237 | 646 | 54.2 | Plus |
Dana\GF13645-PA | 255 | GF13645-PA | 30..251 | 13..234 | 491 | 45 | Plus |
Dana\GF15315-PA | 226 | GF15315-PA | 25..222 | 40..236 | 326 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22543-PA | 244 | GG22543-PA | 15..244 | 10..239 | 1177 | 99.1 | Plus |
Dere\GG22542-PA | 324 | GG22542-PA | 94..324 | 10..239 | 866 | 70.6 | Plus |
Dere\GG21447-PA | 264 | GG21447-PA | 33..263 | 10..237 | 626 | 50.2 | Plus |
Dere\GG23314-PA | 274 | GG23314-PA | 51..270 | 15..234 | 412 | 39.1 | Plus |
Dere\GG24567-PA | 221 | GG24567-PA | 23..218 | 39..236 | 238 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20517-PA | 246 | GH20517-PA | 2..246 | 3..239 | 1043 | 86.9 | Plus |
Dgri\GH20515-PA | 331 | GH20515-PA | 101..331 | 10..239 | 910 | 75.8 | Plus |
Dgri\GH19695-PA | 263 | GH19695-PA | 34..263 | 10..239 | 772 | 61.7 | Plus |
Dgri\GH23740-PA | 263 | GH23740-PA | 34..263 | 10..239 | 760 | 60.9 | Plus |
Dgri\GH21302-PA | 289 | GH21302-PA | 53..287 | 1..235 | 600 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lfg-PD | 239 | CG3814-PD | 1..239 | 1..239 | 1208 | 100 | Plus |
Lfg-PA | 239 | CG3814-PA | 1..239 | 1..239 | 1208 | 100 | Plus |
Lfg-PB | 244 | CG3814-PB | 15..244 | 10..239 | 1157 | 100 | Plus |
Lfg-PC | 203 | CG3814-PC | 1..203 | 37..239 | 1023 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 89..313 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PG | 313 | CG3798-PG | 89..313 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PA | 313 | CG3798-PA | 89..313 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PB | 313 | CG3798-PB | 89..313 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PI | 316 | CG3798-PI | 92..316 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PF | 316 | CG3798-PF | 92..316 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PE | 324 | CG3798-PE | 100..324 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PC | 324 | CG3798-PC | 100..324 | 15..239 | 862 | 72.4 | Plus |
Nmda1-PD | 324 | CG3798-PD | 100..324 | 15..239 | 862 | 72.4 | Plus |
CG9722-PA | 264 | CG9722-PA | 38..261 | 12..235 | 653 | 54.9 | Plus |
CG30379-PB | 295 | CG30379-PB | 72..291 | 15..234 | 454 | 37.7 | Plus |
CG33673-PB | 235 | CG33673-PB | 16..232 | 19..236 | 346 | 33.8 | Plus |
CG34430-PA | 264 | CG34430-PA | 30..232 | 15..223 | 198 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21062-PA | 244 | GI21062-PA | 6..244 | 2..239 | 1096 | 87 | Plus |
Dmoj\GI21061-PA | 324 | GI21061-PA | 94..324 | 10..239 | 875 | 72.3 | Plus |
Dmoj\GI24550-PA | 263 | GI24550-PA | 33..263 | 10..239 | 786 | 62.3 | Plus |
Dmoj\GI19790-PA | 285 | GI19790-PA | 56..279 | 8..231 | 551 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17451-PA | 245 | GL17451-PA | 2..245 | 4..239 | 1055 | 88.5 | Plus |
Dper\GL17450-PA | 319 | GL17450-PA | 89..319 | 10..239 | 888 | 71.9 | Plus |
Dper\GL23305-PA | 282 | GL23305-PA | 30..252 | 10..231 | 664 | 61 | Plus |
Dper\GL11699-PA | 304 | GL11699-PA | 77..300 | 11..234 | 534 | 46.4 | Plus |
Dper\GL18462-PA | 223 | GL18462-PA | 22..214 | 38..230 | 338 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17704-PB | 237 | GA17704-PB | 2..237 | 4..239 | 1074 | 91.5 | Plus |
Dpse\GA17704-PA | 245 | GA17704-PA | 2..245 | 4..239 | 1055 | 88.5 | Plus |
Dpse\GA17693-PC | 308 | GA17693-PC | 78..308 | 10..239 | 889 | 71.9 | Plus |
Dpse\GA17693-PB | 310 | GA17693-PB | 80..310 | 10..239 | 889 | 71.9 | Plus |
Dpse\GA17693-PA | 319 | GA17693-PA | 89..319 | 10..239 | 888 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20328-PA | 244 | GM20328-PA | 15..244 | 10..239 | 1177 | 99.1 | Plus |
Dsec\GM20327-PA | 324 | GM20327-PA | 94..324 | 10..239 | 876 | 71.4 | Plus |
Dsec\GM25879-PA | 264 | GM25879-PA | 38..263 | 12..237 | 640 | 54 | Plus |
Dsec\GM20992-PA | 243 | GM20992-PA | 52..239 | 15..234 | 374 | 34.1 | Plus |
Dsec\GM16580-PA | 222 | GM16580-PA | 24..219 | 35..236 | 250 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25805-PA | 244 | GD25805-PA | 15..244 | 10..239 | 1177 | 99.1 | Plus |
Dsim\GD25804-PA | 324 | GD25804-PA | 94..324 | 10..239 | 878 | 71.4 | Plus |
Dsim\GD20449-PA | 262 | GD20449-PA | 36..261 | 12..237 | 643 | 54.4 | Plus |
Dsim\GD10521-PA | 284 | GD10521-PA | 61..280 | 15..234 | 428 | 36.8 | Plus |
Dsim\GD10520-PA | 275 | GD10520-PA | 52..271 | 15..234 | 423 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21986-PA | 244 | GJ21986-PA | 6..244 | 2..239 | 1121 | 89.5 | Plus |
Dvir\GJ21985-PA | 333 | GJ21985-PA | 94..333 | 2..239 | 874 | 70.4 | Plus |
Dvir\GJ22617-PA | 262 | GJ22617-PA | 32..262 | 10..239 | 835 | 66.7 | Plus |
Dvir\GJ15114-PA | 302 | GJ15114-PA | 76..299 | 10..233 | 577 | 49.6 | Plus |
Dvir\GJ22864-PA | 199 | GJ22864-PA | 9..196 | 48..236 | 311 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20879-PA | 244 | GK20879-PA | 15..244 | 10..239 | 1047 | 86.1 | Plus |
Dwil\GK20878-PA | 323 | GK20878-PA | 93..323 | 10..239 | 887 | 71.4 | Plus |
Dwil\GK19213-PA | 271 | GK19213-PA | 44..271 | 11..238 | 740 | 60.5 | Plus |
Dwil\GK21973-PA | 299 | GK21973-PA | 74..297 | 12..235 | 589 | 49.6 | Plus |
Dwil\GK20410-PA | 176 | GK20410-PA | 4..173 | 43..212 | 226 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13413-PA | 244 | GE13413-PA | 15..244 | 10..239 | 1180 | 99.6 | Plus |
Dyak\GE13412-PA | 324 | GE13412-PA | 94..324 | 10..239 | 868 | 70.6 | Plus |
Dyak\GE10054-PA | 264 | GE10054-PA | 38..263 | 12..237 | 669 | 56.2 | Plus |
Dyak\GE19159-PA | 242 | GE19159-PA | 51..238 | 15..234 | 384 | 35 | Plus |
Dyak\GE15302-PA | 223 | GE15302-PA | 23..219 | 39..236 | 263 | 33.7 | Plus |
Translation from 237 to 956
> RE58310.hyp MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3814-PD | 239 | CG3814-PD | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PA | 239 | CG3814-PA | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PB | 244 | CG3814-PB | 15..244 | 10..239 | 1157 | 100 | Plus |
CG3814-PC | 203 | CG3814-PC | 1..203 | 37..239 | 1023 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 89..313 | 15..239 | 862 | 72.4 | Plus |