Clone RE58310 Report

Search the DGRC for RE58310

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:583
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG3814-RA
Protein status:RE58310.pep: gold
Sequenced Size:1082

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3814 2004-07-13 Blastp of sequenced clone
CG3814 2008-04-29 Release 5.5 accounting
CG3814 2008-08-15 Release 5.9 accounting
CG3814 2008-12-18 5.12 accounting

Clone Sequence Records

RE58310.complete Sequence

1082 bp (1082 high quality bases) assembled on 2004-07-13

GenBank Submission: BT015208

> RE58310.complete
AGTTCGTGTGAATTCCAGCAGGGCGTAGCTATAAAATGTATCACTACCAG
CAAGAGTAGAAGTGTGGGGCTGTGATAAGAGCCGGTAACCGGCTAATCTC
AACTCATACGTCCATATGGGAACACCTAGAAAGGGCGATTCGGTTCCATT
AAGCTGAAACACTAGCACGCTGCCGGCAGTCGGGCAAAGAGAGCACCGTA
ACTTAAGTGACTAAAGTTTAGTCATAGCAATTTAGCCATGAGCAGCGACA
ATCATTTTCAGTACGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGAC
CAGAGCATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTG
CCAATTGCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAG
CTTCGCAGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTG
GCCGTTCTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACG
CCGTAAGACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGG
AGTCGTTCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTC
CTGATGGCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTT
TGCCCTGCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGG
CCTGTCTGGTGGTCTTCATCATTTTTGGTATAATCGCTATCTTCATACCG
GGCAAGGTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTC
CGTTTACTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGT
ACTCCATCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTG
GACATTATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCG
CAATTAGACTGGTCATTATGATCCATAGCTTCTATTCCAGTTTTAGAAAT
GTAACTTAATTTTATGTGCCCAGTGCCACCTTAGCCGGAAAGAAATACAA
GACGACTAACTAATACAAAAAAAAAAAAAAAA

RE58310.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RA 1347 CG3814-RA 142..1209 1..1068 5325 99.9 Plus
CG3814-RB 1142 CG3814-RB 248..1051 265..1068 4005 99.8 Plus
Nmda1.a 1668 Nmda1.a 699..988 652..941 400 75.8 Plus
CG3814-RB 1142 CG3814-RB 171..224 1..54 270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8762465..8763079 1064..450 3015 99.3 Minus
chr2R 21145070 chr2R 8763561..8763773 265..53 1065 100 Minus
chr2R 21145070 chr2R 8763140..8763243 451..348 520 100 Minus
chr2R 21145070 chr2R 8763400..8763483 348..265 420 100 Minus
chr2R 21145070 chr2R 8764970..8765315 941..596 410 74.6 Minus
chr3R 27901430 chr3R 9977843..9977997 926..772 295 79.4 Minus
chr2R 21145070 chr2R 8764071..8764124 54..1 270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875162..12875780 1068..450 3080 99.8 Minus
2R 25286936 2R 12876262..12876474 265..53 1065 100 Minus
2R 25286936 2R 12875841..12875944 451..348 520 100 Minus
2R 25286936 2R 12876101..12876184 348..265 420 100 Minus
2R 25286936 2R 12877671..12878016 941..596 410 74.6 Minus
3R 32079331 3R 14152993..14153147 926..772 295 79.4 Minus
2R 25286936 2R 12876772..12876825 54..1 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12876361..12876979 1068..450 3080 99.8 Minus
2R 25260384 2R 12877461..12877673 265..53 1065 100 Minus
2R 25260384 2R 12877040..12877143 451..348 520 100 Minus
2R 25260384 2R 12877300..12877383 348..265 420 100 Minus
2R 25260384 2R 12878870..12879159 941..652 400 75.8 Minus
3R 31820162 3R 13893824..13893978 926..772 295 79.3 Minus
2R 25260384 2R 12877971..12878024 54..1 270 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:31:05 has no hits.

RE58310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:32:02 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8762463..8763078 451..1066 99 <- Minus
chr2R 8763141..8763242 349..450 100 <- Minus
chr2R 8763400..8763482 266..348 100 <- Minus
chr2R 8763561..8763771 55..265 100 <- Minus
chr2R 8764071..8764124 1..54 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:16 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 238..957 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:18 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 238..957 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:35 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 238..957 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:08 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 238..957 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:07 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 238..957 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:41:57 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 142..1206 1..1066 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:18 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 142..1206 1..1066 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:35 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 8..1072 1..1066 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:09 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 142..1206 1..1066 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:07 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 8..1072 1..1066 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:02 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12875164..12875779 451..1066 99 <- Minus
2R 12875842..12875943 349..450 100 <- Minus
2R 12876101..12876183 266..348 100 <- Minus
2R 12876262..12876472 55..265 100 <- Minus
2R 12876772..12876825 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:02 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12875164..12875779 451..1066 99 <- Minus
2R 12875842..12875943 349..450 100 <- Minus
2R 12876101..12876183 266..348 100 <- Minus
2R 12876262..12876472 55..265 100 <- Minus
2R 12876772..12876825 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:02 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12875164..12875779 451..1066 99 <- Minus
2R 12875842..12875943 349..450 100 <- Minus
2R 12876101..12876183 266..348 100 <- Minus
2R 12876262..12876472 55..265 100 <- Minus
2R 12876772..12876825 1..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:35 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762669..8763284 451..1066 99 <- Minus
arm_2R 8763347..8763448 349..450 100 <- Minus
arm_2R 8763606..8763688 266..348 100 <- Minus
arm_2R 8763767..8763977 55..265 100 <- Minus
arm_2R 8764277..8764330 1..54 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:22 Download gff for RE58310.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12876363..12876978 451..1066 99 <- Minus
2R 12877041..12877142 349..450 100 <- Minus
2R 12877300..12877382 266..348 100 <- Minus
2R 12877461..12877671 55..265 100 <- Minus
2R 12877971..12878024 1..54 100   Minus

RE58310.pep Sequence

Translation from 237 to 956

> RE58310.pep
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*

RE58310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11999-PA 247 GF11999-PA 1..247 1..239 1165 91.1 Plus
Dana\GF11997-PA 323 GF11997-PA 93..323 10..239 877 73.6 Plus
Dana\GF18785-PA 255 GF18785-PA 27..253 11..237 646 54.2 Plus
Dana\GF13645-PA 255 GF13645-PA 30..251 13..234 491 45 Plus
Dana\GF15315-PA 226 GF15315-PA 25..222 40..236 326 36.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22543-PA 244 GG22543-PA 15..244 10..239 1177 99.1 Plus
Dere\GG22542-PA 324 GG22542-PA 94..324 10..239 866 70.6 Plus
Dere\GG21447-PA 264 GG21447-PA 33..263 10..237 626 50.2 Plus
Dere\GG23314-PA 274 GG23314-PA 51..270 15..234 412 39.1 Plus
Dere\GG24567-PA 221 GG24567-PA 23..218 39..236 238 33.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20517-PA 246 GH20517-PA 2..246 3..239 1043 86.9 Plus
Dgri\GH20515-PA 331 GH20515-PA 101..331 10..239 910 75.8 Plus
Dgri\GH19695-PA 263 GH19695-PA 34..263 10..239 772 61.7 Plus
Dgri\GH23740-PA 263 GH23740-PA 34..263 10..239 760 60.9 Plus
Dgri\GH21302-PA 289 GH21302-PA 53..287 1..235 600 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Lfg-PD 239 CG3814-PD 1..239 1..239 1208 100 Plus
Lfg-PA 239 CG3814-PA 1..239 1..239 1208 100 Plus
Lfg-PB 244 CG3814-PB 15..244 10..239 1157 100 Plus
Lfg-PC 203 CG3814-PC 1..203 37..239 1023 100 Plus
Nmda1-PH 313 CG3798-PH 89..313 15..239 862 72.4 Plus
Nmda1-PG 313 CG3798-PG 89..313 15..239 862 72.4 Plus
Nmda1-PA 313 CG3798-PA 89..313 15..239 862 72.4 Plus
Nmda1-PB 313 CG3798-PB 89..313 15..239 862 72.4 Plus
Nmda1-PI 316 CG3798-PI 92..316 15..239 862 72.4 Plus
Nmda1-PF 316 CG3798-PF 92..316 15..239 862 72.4 Plus
Nmda1-PE 324 CG3798-PE 100..324 15..239 862 72.4 Plus
Nmda1-PC 324 CG3798-PC 100..324 15..239 862 72.4 Plus
Nmda1-PD 324 CG3798-PD 100..324 15..239 862 72.4 Plus
CG9722-PA 264 CG9722-PA 38..261 12..235 653 54.9 Plus
CG30379-PB 295 CG30379-PB 72..291 15..234 454 37.7 Plus
CG33673-PB 235 CG33673-PB 16..232 19..236 346 33.8 Plus
CG34430-PA 264 CG34430-PA 30..232 15..223 198 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21062-PA 244 GI21062-PA 6..244 2..239 1096 87 Plus
Dmoj\GI21061-PA 324 GI21061-PA 94..324 10..239 875 72.3 Plus
Dmoj\GI24550-PA 263 GI24550-PA 33..263 10..239 786 62.3 Plus
Dmoj\GI19790-PA 285 GI19790-PA 56..279 8..231 551 49.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17451-PA 245 GL17451-PA 2..245 4..239 1055 88.5 Plus
Dper\GL17450-PA 319 GL17450-PA 89..319 10..239 888 71.9 Plus
Dper\GL23305-PA 282 GL23305-PA 30..252 10..231 664 61 Plus
Dper\GL11699-PA 304 GL11699-PA 77..300 11..234 534 46.4 Plus
Dper\GL18462-PA 223 GL18462-PA 22..214 38..230 338 38.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17704-PB 237 GA17704-PB 2..237 4..239 1074 91.5 Plus
Dpse\GA17704-PA 245 GA17704-PA 2..245 4..239 1055 88.5 Plus
Dpse\GA17693-PC 308 GA17693-PC 78..308 10..239 889 71.9 Plus
Dpse\GA17693-PB 310 GA17693-PB 80..310 10..239 889 71.9 Plus
Dpse\GA17693-PA 319 GA17693-PA 89..319 10..239 888 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20328-PA 244 GM20328-PA 15..244 10..239 1177 99.1 Plus
Dsec\GM20327-PA 324 GM20327-PA 94..324 10..239 876 71.4 Plus
Dsec\GM25879-PA 264 GM25879-PA 38..263 12..237 640 54 Plus
Dsec\GM20992-PA 243 GM20992-PA 52..239 15..234 374 34.1 Plus
Dsec\GM16580-PA 222 GM16580-PA 24..219 35..236 250 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25805-PA 244 GD25805-PA 15..244 10..239 1177 99.1 Plus
Dsim\GD25804-PA 324 GD25804-PA 94..324 10..239 878 71.4 Plus
Dsim\GD20449-PA 262 GD20449-PA 36..261 12..237 643 54.4 Plus
Dsim\GD10521-PA 284 GD10521-PA 61..280 15..234 428 36.8 Plus
Dsim\GD10520-PA 275 GD10520-PA 52..271 15..234 423 36.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21986-PA 244 GJ21986-PA 6..244 2..239 1121 89.5 Plus
Dvir\GJ21985-PA 333 GJ21985-PA 94..333 2..239 874 70.4 Plus
Dvir\GJ22617-PA 262 GJ22617-PA 32..262 10..239 835 66.7 Plus
Dvir\GJ15114-PA 302 GJ15114-PA 76..299 10..233 577 49.6 Plus
Dvir\GJ22864-PA 199 GJ22864-PA 9..196 48..236 311 41.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20879-PA 244 GK20879-PA 15..244 10..239 1047 86.1 Plus
Dwil\GK20878-PA 323 GK20878-PA 93..323 10..239 887 71.4 Plus
Dwil\GK19213-PA 271 GK19213-PA 44..271 11..238 740 60.5 Plus
Dwil\GK21973-PA 299 GK21973-PA 74..297 12..235 589 49.6 Plus
Dwil\GK20410-PA 176 GK20410-PA 4..173 43..212 226 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13413-PA 244 GE13413-PA 15..244 10..239 1180 99.6 Plus
Dyak\GE13412-PA 324 GE13412-PA 94..324 10..239 868 70.6 Plus
Dyak\GE10054-PA 264 GE10054-PA 38..263 12..237 669 56.2 Plus
Dyak\GE19159-PA 242 GE19159-PA 51..238 15..234 384 35 Plus
Dyak\GE15302-PA 223 GE15302-PA 23..219 39..236 263 33.7 Plus

RE58310.hyp Sequence

Translation from 237 to 956

> RE58310.hyp
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*

RE58310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PD 239 CG3814-PD 1..239 1..239 1208 100 Plus
CG3814-PA 239 CG3814-PA 1..239 1..239 1208 100 Plus
CG3814-PB 244 CG3814-PB 15..244 10..239 1157 100 Plus
CG3814-PC 203 CG3814-PC 1..203 37..239 1023 100 Plus
Nmda1-PH 313 CG3798-PH 89..313 15..239 862 72.4 Plus