BDGP Sequence Production Resources |
Search the DGRC for RE58329
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 583 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dhpr-RA |
Protein status: | RE58329.pep: gold |
Sequenced Size: | 1273 |
Gene | Date | Evidence |
---|---|---|
CG4665 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4665 | 2002-04-26 | Blastp of sequenced clone |
CG4665 | 2003-01-01 | Sim4 clustering to Release 3 |
Dhpr | 2008-04-29 | Release 5.5 accounting |
Dhpr | 2008-08-15 | Release 5.9 accounting |
Dhpr | 2008-12-18 | 5.12 accounting |
1273 bp (1273 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113502
> RE58329.complete ATTGATTTTCCACTTGTTGCTGCTGCTGTATCTTTTTGTAGCGAATAAAA AGCTATATCTGCACGCTGAAGCTTAAACTCGACTTGAAATTCATTCTCCC GATTATTACCGGTAGAACTGGTCTTGCGGTTAAAAACCCCAGCTGCGTTC AAAGCTCCCGCACGATTTTGACTCACCAAAATCGGTGTTCTCGTGTTTTT CTCGCATTTAGTTAAATTGCAACTTTAAAACTGGCAGCACGCATCATGTC CGCAGGTCGAGTGGTTATTTACGGTGGCAAAGGAGCCTTGGGTTCGGCCT GTGTCGATCACTTTAAAGCCAACAATTATTGGGTTGGCAGCATCGATCTG ACGGAGAACGAGAAGGCCGACGTTAGCATTGTGGTGCCACGCGATGCTAG TTGGGTGGAACAGGAGGAAACGGTGGTGTCCAAAGTCGGGGAATCCCTTG CCGGCGAGAAACTGGATGCCGTCATCTGCGTGGCTGGCGGCTGGGCAGGT GGTAATGCCAAGAAGGATCTGGCCAAGAATGCCGATCTCATGTGGAAGCA GAGCGTGTTGACCTCCGCCATTTCGGCAGCTGTGGCTGCTCAGCATCTAA AGGCCGGAGGCTTGCTGGCTCTCACTGGAGCTAAGCCCGCTTTGGAGGGC ACACCCGGTATGATCGGCTATGGAATGGCCAAGGCAGCTGTCCACCAGCT GACCCGCTCGCTGGGCGCTGAGAAATCCGGTCTGCCAGCTGGTTCCCTGG CTGTGTCCATACTTCCCGTAACTCTAGATACACCCATGAACCGTAAATGG ATGCCGGATGCAGATTTTGGAACCTGGACACCGCTCACCGAGGTGGCCGG ACTTTTCCTTAAGTGGACCCAAGATCAGGAGAGGCCCAAAACTGGATCCC TGTTGCAGCTGATCACCACAAACGGCATTACGCAGCTTATCGCTGCCGAA TAGGCTAAGAGATACAGATACGAATCCAAATGACACTTAATGATGAAACA AAAATGCTCAAAAACCATAATCTAAACGCTTTCGCTTGTACATAAACTAT TCATAAATAAATCGCTGGGCGGCTTTCGATCGTTTAATGTGGTTCTGCTT ACACGATTTGGGTGGATAACCTCTTGAACTCGGGAGCTTAACGAGCGTTT AAAGCTTGCTTAGAGTACAATCTTTAGTTTGCTTAGTTTGGAAATTGTTT CTACGACTTCTTCTTCTTCATAATCTTCATGAATAAAACCATACCTGTAA ATTGAAGAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9126375..9126702 | 1..329 | 97 | -> | Plus |
chr3L | 9126799..9127733 | 330..1257 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RB | 1..708 | 246..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RB | 1..708 | 246..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RC | 1..708 | 246..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RB | 1..708 | 246..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RC | 1..708 | 246..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RA | 2..1257 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RA | 2..1257 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RC | 3..1258 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RA | 2..1257 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhpr-RA | 3..1258 | 1..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9134562..9134890 | 1..329 | 100 | -> | Plus |
3L | 9134987..9135913 | 330..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9134562..9134890 | 1..329 | 100 | -> | Plus |
3L | 9134987..9135913 | 330..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9134562..9134890 | 1..329 | 100 | -> | Plus |
3L | 9134987..9135913 | 330..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9127662..9127990 | 1..329 | 100 | -> | Plus |
arm_3L | 9128087..9129013 | 330..1257 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9127662..9127990 | 1..329 | 100 | -> | Plus |
3L | 9128087..9129013 | 330..1257 | 99 | Plus |
Translation from 245 to 952
> RE58329.pep MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10857-PA | 235 | GF10857-PA | 1..235 | 1..235 | 1116 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14376-PA | 235 | GG14376-PA | 1..235 | 1..235 | 1157 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15558-PA | 235 | GH15558-PA | 1..235 | 1..235 | 1018 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dhpr-PB | 235 | CG4665-PB | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PA | 235 | CG4665-PA | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PC | 235 | CG4665-PC | 1..235 | 1..235 | 1204 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16833-PA | 235 | GI16833-PA | 1..235 | 1..235 | 1026 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15041-PA | 235 | GL15041-PA | 1..235 | 1..235 | 1085 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18340-PA | 235 | GA18340-PA | 1..235 | 1..235 | 1085 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25120-PA | 235 | GM25120-PA | 1..235 | 1..235 | 1190 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14155-PA | 158 | GD14155-PA | 1..139 | 1..139 | 677 | 96.4 | Plus |
Dsim\GD14156-PA | 55 | GD14156-PA | 1..55 | 181..235 | 289 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12582-PA | 235 | GJ12582-PA | 1..235 | 1..235 | 1049 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23691-PA | 235 | GK23691-PA | 1..235 | 1..235 | 1095 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20807-PA | 235 | GE20807-PA | 1..235 | 1..235 | 1161 | 95.3 | Plus |
Translation from 245 to 952
> RE58329.hyp MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*