Clone RE58329 Report

Search the DGRC for RE58329

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:583
Well:29
Vector:pFlc-1
Associated Gene/TranscriptDhpr-RA
Protein status:RE58329.pep: gold
Sequenced Size:1273

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4665 2002-01-01 Sim4 clustering to Release 2
CG4665 2002-04-26 Blastp of sequenced clone
CG4665 2003-01-01 Sim4 clustering to Release 3
Dhpr 2008-04-29 Release 5.5 accounting
Dhpr 2008-08-15 Release 5.9 accounting
Dhpr 2008-12-18 5.12 accounting

Clone Sequence Records

RE58329.complete Sequence

1273 bp (1273 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113502

> RE58329.complete
ATTGATTTTCCACTTGTTGCTGCTGCTGTATCTTTTTGTAGCGAATAAAA
AGCTATATCTGCACGCTGAAGCTTAAACTCGACTTGAAATTCATTCTCCC
GATTATTACCGGTAGAACTGGTCTTGCGGTTAAAAACCCCAGCTGCGTTC
AAAGCTCCCGCACGATTTTGACTCACCAAAATCGGTGTTCTCGTGTTTTT
CTCGCATTTAGTTAAATTGCAACTTTAAAACTGGCAGCACGCATCATGTC
CGCAGGTCGAGTGGTTATTTACGGTGGCAAAGGAGCCTTGGGTTCGGCCT
GTGTCGATCACTTTAAAGCCAACAATTATTGGGTTGGCAGCATCGATCTG
ACGGAGAACGAGAAGGCCGACGTTAGCATTGTGGTGCCACGCGATGCTAG
TTGGGTGGAACAGGAGGAAACGGTGGTGTCCAAAGTCGGGGAATCCCTTG
CCGGCGAGAAACTGGATGCCGTCATCTGCGTGGCTGGCGGCTGGGCAGGT
GGTAATGCCAAGAAGGATCTGGCCAAGAATGCCGATCTCATGTGGAAGCA
GAGCGTGTTGACCTCCGCCATTTCGGCAGCTGTGGCTGCTCAGCATCTAA
AGGCCGGAGGCTTGCTGGCTCTCACTGGAGCTAAGCCCGCTTTGGAGGGC
ACACCCGGTATGATCGGCTATGGAATGGCCAAGGCAGCTGTCCACCAGCT
GACCCGCTCGCTGGGCGCTGAGAAATCCGGTCTGCCAGCTGGTTCCCTGG
CTGTGTCCATACTTCCCGTAACTCTAGATACACCCATGAACCGTAAATGG
ATGCCGGATGCAGATTTTGGAACCTGGACACCGCTCACCGAGGTGGCCGG
ACTTTTCCTTAAGTGGACCCAAGATCAGGAGAGGCCCAAAACTGGATCCC
TGTTGCAGCTGATCACCACAAACGGCATTACGCAGCTTATCGCTGCCGAA
TAGGCTAAGAGATACAGATACGAATCCAAATGACACTTAATGATGAAACA
AAAATGCTCAAAAACCATAATCTAAACGCTTTCGCTTGTACATAAACTAT
TCATAAATAAATCGCTGGGCGGCTTTCGATCGTTTAATGTGGTTCTGCTT
ACACGATTTGGGTGGATAACCTCTTGAACTCGGGAGCTTAACGAGCGTTT
AAAGCTTGCTTAGAGTACAATCTTTAGTTTGCTTAGTTTGGAAATTGTTT
CTACGACTTCTTCTTCTTCATAATCTTCATGAATAAAACCATACCTGTAA
ATTGAAGAAAAAAAAAAAAAAAA

RE58329.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RA 1281 Dhpr-RA 28..1281 1..1254 6270 100 Plus
Dhpr.a 1126 Dhpr.a 28..1126 1..1099 5495 100 Plus
Dhpr-RC 1126 Dhpr-RC 28..1126 1..1099 5495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9126799..9127733 330..1256 4325 97.8 Plus
chr3L 24539361 chr3L 9126375..9126702 1..329 1505 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135913 330..1256 4635 100 Plus
3L 28110227 3L 9134562..9134890 1..329 1645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9128087..9129013 330..1256 4635 100 Plus
3L 28103327 3L 9127662..9127990 1..329 1645 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:44:14 has no hits.

RE58329.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:45:09 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9126375..9126702 1..329 97 -> Plus
chr3L 9126799..9127733 330..1257 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:19 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 1..708 246..953 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:42 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 1..708 246..953 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:08 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 1..708 246..953 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:05 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 1..708 246..953 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:06 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 1..708 246..953 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:59 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RA 2..1257 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:42 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RA 2..1257 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:08 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 3..1258 1..1257 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:05 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RA 2..1257 1..1257 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:06 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RA 3..1258 1..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:09 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9134562..9134890 1..329 100 -> Plus
3L 9134987..9135913 330..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:09 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9134562..9134890 1..329 100 -> Plus
3L 9134987..9135913 330..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:09 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9134562..9134890 1..329 100 -> Plus
3L 9134987..9135913 330..1257 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:08 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127662..9127990 1..329 100 -> Plus
arm_3L 9128087..9129013 330..1257 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:51 Download gff for RE58329.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9127662..9127990 1..329 100 -> Plus
3L 9128087..9129013 330..1257 99   Plus

RE58329.pep Sequence

Translation from 245 to 952

> RE58329.pep
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*

RE58329.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10857-PA 235 GF10857-PA 1..235 1..235 1116 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14376-PA 235 GG14376-PA 1..235 1..235 1157 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15558-PA 235 GH15558-PA 1..235 1..235 1018 84.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-PB 235 CG4665-PB 1..235 1..235 1204 100 Plus
Dhpr-PA 235 CG4665-PA 1..235 1..235 1204 100 Plus
Dhpr-PC 235 CG4665-PC 1..235 1..235 1204 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16833-PA 235 GI16833-PA 1..235 1..235 1026 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15041-PA 235 GL15041-PA 1..235 1..235 1085 88.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18340-PA 235 GA18340-PA 1..235 1..235 1085 88.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25120-PA 235 GM25120-PA 1..235 1..235 1190 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14155-PA 158 GD14155-PA 1..139 1..139 677 96.4 Plus
Dsim\GD14156-PA 55 GD14156-PA 1..55 181..235 289 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12582-PA 235 GJ12582-PA 1..235 1..235 1049 84.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23691-PA 235 GK23691-PA 1..235 1..235 1095 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20807-PA 235 GE20807-PA 1..235 1..235 1161 95.3 Plus

RE58329.hyp Sequence

Translation from 245 to 952

> RE58329.hyp
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAE*

RE58329.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-PB 235 CG4665-PB 1..235 1..235 1204 100 Plus
Dhpr-PA 235 CG4665-PA 1..235 1..235 1204 100 Plus
Dhpr-PC 235 CG4665-PC 1..235 1..235 1204 100 Plus