BDGP Sequence Production Resources |
Search the DGRC for RE58349
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 583 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4666-RA |
Protein status: | RE58349.pep: gold |
Preliminary Size: | 729 |
Sequenced Size: | 1076 |
Gene | Date | Evidence |
---|---|---|
CG4666 | 2001-12-14 | Blastp of sequenced clone |
CG4666 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4666 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4666 | 2008-04-29 | Release 5.5 accounting |
CG4666 | 2008-08-15 | Release 5.9 accounting |
CG4666 | 2008-12-18 | 5.12 accounting |
1076 bp (1076 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071547
> RE58349.complete GAGGCGACGTTGGCCTTGCTTACCCAACGGTTGTGTTGCTGCGTACCGCT CCGCCCGCTTTTACCGCACCGTACCGTCCCTCCCCGCTCTTACCGATCGA ACCCAGTTGGTGGTGTGTTTGGCCGAGCTTAACGACCGACTGCAAATTGG GAATCCAGACACACACAACCAGATATCGCGATGTCTTGGCTGGTTGTTTT GTTGATCCTGTACGTAATCTGGGATGTCAACTACTTCATCCGCTGCGTGT TCACGGTGTTCGCCGGCCGGCTGTTCCAGCGGAAGCGCAAGGTCACGGAC ACCACGACGATCTATGGACTGTGCACCTCGCAGGACGTGGACATCTTTAT CCGGCACATGAACAACGCCCGCTATCTGCGCGAACTGGACTTTGCCCGCT TCCATTTCTACGCCCTCACTGGACTCTATGAGCGCATCCGGGACCGACGC GGCGGTGCCGTCCAGGGAGCCAGCAGTGTTCGCTACCGCCGCACCATACC CATCTTCCATCCGTACAAGATTCAGACCAAGCTGATCTGGTGGGACGACA AGGCCATTTACCTGGAGCAGCAGTTTATTACCCTTTCGGACGGATTTGTA CGCGCGGTGGCCATGTCCAAGCAGAACATCACCAACTGCAATGTGCTGGA GGTACTGAAGACCTATCCGGAAACTGCCCAGCGACCGGAGAAGCCGGAGG AGCTCAAGCTCTGGCTGGATGCCATCGAGCTGTCCAGCCAGAAGCTGCGA AAGGACAAGTGAATCGATTGATTGATTCCATCTCCCGCAGCACAGCTCAT TTACATATGTTTGCCTCATTTACTTAGATTCGTAGTCATCTTCTATTTTT TTTTTTTGAGTGCATAGTGAAGTAATTCTAGACTGGTGGGTTTTTCACAC AAAAAAGAGCGTAACAAAATGTACACAAGTCATGAATCTAAACAATGGCC CATAGCAACTTAAAGACTTTATTTGCTATTATTTTTTCACTGTGCCTTAG TTATAGGAATATTGCATTAATGGAATGGCTGAAGATTTTAAATATAATTT TTTACAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4666-RA | 1370 | CG4666-RA | 252..1312 | 5..1065 | 5275 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5968297..5969210 | 148..1060 | 98 | <- | Minus |
chrX | 5969577..5969722 | 1..147 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..582 | 181..762 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..582 | 181..762 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..582 | 181..762 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..582 | 181..762 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..582 | 181..762 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..1059 | 2..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..1059 | 2..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 48..1106 | 1..1059 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 1..1059 | 2..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4666-RA | 48..1107 | 1..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6077337..6077482 | 1..147 | 97 | Minus | |
X | 6076072..6076984 | 148..1060 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6077337..6077482 | 1..147 | 97 | Minus | |
X | 6076072..6076984 | 148..1060 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6077337..6077482 | 1..147 | 97 | Minus | |
X | 6076072..6076984 | 148..1060 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5970105..5971017 | 148..1060 | 99 | <- | Minus |
arm_X | 5971370..5971515 | 1..147 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6084170..6085082 | 148..1060 | 99 | <- | Minus |
X | 6085435..6085580 | 1..147 | 97 | Minus |
Translation from 180 to 761
> RE58349.pep MSWLVVLLILYVIWDVNYFIRCVFTVFAGRLFQRKRKVTDTTTIYGLCTS QDVDIFIRHMNNARYLRELDFARFHFYALTGLYERIRDRRGGAVQGASSV RYRRTIPIFHPYKIQTKLIWWDDKAIYLEQQFITLSDGFVRAVAMSKQNI TNCNVLEVLKTYPETAQRPEKPEELKLWLDAIELSSQKLRKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20315-PA | 193 | GF20315-PA | 1..193 | 1..193 | 946 | 90.2 | Plus |
Dana\GF20314-PA | 236 | GF20314-PA | 9..154 | 1..167 | 308 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17699-PA | 193 | GG17699-PA | 1..193 | 1..193 | 1021 | 99 | Plus |
Dere\GG17698-PA | 261 | GG17698-PA | 9..176 | 1..167 | 363 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24111-PA | 193 | GH24111-PA | 1..193 | 1..193 | 847 | 85.5 | Plus |
Dgri\GH24110-PA | 283 | GH24110-PA | 9..179 | 1..169 | 359 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4666-PB | 193 | CG4666-PB | 1..193 | 1..193 | 1013 | 100 | Plus |
CG4666-PA | 193 | CG4666-PA | 1..193 | 1..193 | 1013 | 100 | Plus |
CG4660-PA | 261 | CG4660-PA | 9..167 | 1..159 | 356 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16370-PA | 193 | GI16370-PA | 14..193 | 14..193 | 861 | 87.8 | Plus |
Dmoj\GI17389-PA | 207 | GI17389-PA | 1..192 | 1..192 | 627 | 56.2 | Plus |
Dmoj\GI16369-PA | 258 | GI16369-PA | 9..180 | 1..168 | 369 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14956-PA | 134 | GL14956-PA | 1..134 | 60..193 | 654 | 89.6 | Plus |
Dper\GL14955-PA | 268 | GL14955-PA | 9..183 | 1..174 | 377 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22284-PA | 193 | GA22284-PA | 1..193 | 1..193 | 956 | 90.7 | Plus |
Dpse\GA18337-PA | 268 | GA18337-PA | 9..183 | 1..174 | 377 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12597-PA | 193 | GM12597-PA | 1..193 | 1..193 | 1025 | 99.5 | Plus |
Dsec\GM12596-PA | 261 | GM12596-PA | 9..176 | 1..167 | 361 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16216-PA | 193 | GD16216-PA | 1..193 | 1..193 | 1029 | 100 | Plus |
Dsim\GD16215-PA | 261 | GD16215-PA | 9..176 | 1..167 | 361 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16742-PA | 193 | GJ16742-PA | 14..193 | 14..193 | 842 | 85.6 | Plus |
Dvir\GJ18066-PA | 203 | GJ18066-PA | 21..199 | 15..193 | 666 | 66.5 | Plus |
Dvir\GJ16741-PA | 264 | GJ16741-PA | 25..178 | 17..169 | 337 | 39.6 | Plus |
Translation from 180 to 761
> RE58349.hyp MSWLVVLLILYVIWDVNYFIRCVFTVFAGRLFQRKRKVTDTTTIYGLCTS QDVDIFIRHMNNARYLRELDFARFHFYALTGLYERIRDRRGGAVQGASSV RYRRTIPIFHPYKIQTKLIWWDDKAIYLEQQFITLSDGFVRAVAMSKQNI TNCNVLEVLKTYPETAQRPEKPEELKLWLDAIELSSQKLRKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4666-PB | 193 | CG4666-PB | 1..193 | 1..193 | 1013 | 100 | Plus |
CG4666-PA | 193 | CG4666-PA | 1..193 | 1..193 | 1013 | 100 | Plus |
CG4660-PA | 261 | CG4660-PA | 9..167 | 1..159 | 356 | 39.6 | Plus |