Clone RE58433 Report

Search the DGRC for RE58433

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:584
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG11377-RA
Protein status:RE58433.pep: gold
Preliminary Size:1373
Sequenced Size:1597

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11377 2002-01-01 Sim4 clustering to Release 2
CG11377 2003-01-01 Sim4 clustering to Release 3
CG11377 2003-01-22 Blastp of sequenced clone
CG11377 2008-04-29 Release 5.5 accounting
CG11377 2008-08-15 Release 5.9 accounting
CG11377 2008-12-18 5.12 accounting

Clone Sequence Records

RE58433.complete Sequence

1597 bp (1597 high quality bases) assembled on 2003-01-22

GenBank Submission: AY071548

> RE58433.complete
ATTTATCGATAGTGTCGGCTTTAATTACACGTAAACTCAGATAGTTTGCC
GGTTAAAAAGACAATAAATAAATAAAAATGAGAATCAAGTATTGTTGGCT
CGCAACGCTAGTATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAA
AGCCTGTTCCGCCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTC
AGGGCAGGACTCGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGC
ATGGGAGGAGGAAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAG
TGGAGATCCAGGAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGAT
CACTGCCACAACCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTT
TATCCACAAACAAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCG
ATCAGCTAACAGTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTG
ACCTGCACCGAGTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAG
AAAGGGTAACGGAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACT
GCAACGAATGTGGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAA
TTGCTGTGTACACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGG
AGGTGGTCCCAAGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACT
CGGAGGCAGGATGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCA
AACCCTTGCCGACCACAGCAGTTCTGCGTGAACAATGAGGGCTCCTTTAG
TTGCCTGGAGTGTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTG
ACATGTGCAGGAAGTGTGCGGATGGCTATGAGTTGAAGGAAGGAAAGTGT
CATGATATTTCTGCGGAGCAACGCAGCAACTACGTAAGCTTTACGCGAAT
GCTCACCTACTTCGGAATGTGCGTGGCCACCTGTGTCATCTTCCAGAGCT
CTACTCATATTGCCTGGGGTTGCATTGTTGGGGCGGCAGTGGCAGGGTAC
ATTGCTGTTTCCGAGTACTGGATCAACTCGGAGGCAGGAGGCGGCCACCA
ACCCGAAATAGATACAAAACAGTTGGAGGAACTAATAATGAAGTCTTTAT
AAGTCAAAAGACATGTCAACATTGCTTTCCTTTTATGATATACACGAGCG
TTTTGAAAAGCATAATCTTTTAACATTCCCCCAAGACATCTAACGATTTT
TGTACTTCGTTTGCAGTCCGCAGTGATTCAAACTCCACGGTGCTCGGTGA
AGAGTCCACGCACGAAGAATTGTAAAAGTAACCAAAAACGCACACCTTTT
GTAGCCAATTTTACTTTAATAGGTAATATTATCAATTGATATGTAATTAT
AAATTAGAATTTCAAAAAGCAGGGCATGACCATATTTTTTTACACGTACC
ACACTTAGATATTTATTTGGTTTCAAAAATGTATAAAATCACAAATACAG
CATATATTCGTATGAATAAATATTTTTAACTAAAAAAAAAAAAAAAA

RE58433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1587 CG11377-RA 1..1585 1..1585 7925 100 Plus
CG11377.a 1815 CG11377.a 235..1815 1..1581 7905 100 Plus
Nhe1-RB 2609 Nhe1-RB 2425..2609 1585..1401 925 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 103549..104176 954..1581 3140 100 Plus
chr2L 23010047 chr2L 102416..102941 1..526 2630 100 Plus
chr2L 23010047 chr2L 103039..103468 525..954 2150 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 103515..104146 954..1585 3160 100 Plus
2L 23513712 2L 102382..102907 1..526 2630 100 Plus
2L 23513712 2L 103005..103434 525..954 2150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 103515..104146 954..1585 3160 100 Plus
2L 23513712 2L 102382..102907 1..526 2630 100 Plus
2L 23513712 2L 103005..103434 525..954 2150 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:20:37 has no hits.

RE58433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:21:15 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 102416..102940 1..525 100 -> Plus
chr2L 103040..103468 526..954 100 -> Plus
chr2L 103550..104176 955..1581 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:24 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 78..1202 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:19 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 78..1202 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:21 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 78..1202 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:22 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 78..1202 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:56 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 78..1202 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:14 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1581 1..1581 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:19 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1581 1..1581 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:21 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 3..1583 1..1581 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:22 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1581 1..1581 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:56 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 3..1583 1..1581 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:15 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102382..102906 1..525 100 -> Plus
2L 103006..103434 526..954 100 -> Plus
2L 103516..104142 955..1581 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:15 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102382..102906 1..525 100 -> Plus
2L 103006..103434 526..954 100 -> Plus
2L 103516..104142 955..1581 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:15 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102382..102906 1..525 100 -> Plus
2L 103006..103434 526..954 100 -> Plus
2L 103516..104142 955..1581 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:21 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102382..102906 1..525 100 -> Plus
arm_2L 103006..103434 526..954 100 -> Plus
arm_2L 103516..104142 955..1581 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:22 Download gff for RE58433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102382..102906 1..525 100 -> Plus
2L 103006..103434 526..954 100 -> Plus
2L 103516..104142 955..1581 100   Plus

RE58433.hyp Sequence

Translation from 77 to 1201

> RE58433.hyp
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSL*

RE58433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 374 CG11377-PA 1..374 1..374 2119 100 Plus
CG11377-PB 311 CG11377-PB 1..292 1..292 1689 100 Plus

RE58433.pep Sequence

Translation from 77 to 1201

> RE58433.pep
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSL*

RE58433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14862-PA 371 GF14862-PA 7..371 8..374 1600 79.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24694-PA 374 GG24694-PA 1..374 1..374 1847 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13622-PA 306 GH13622-PA 1..306 64..374 1257 74.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 374 CG11377-PA 1..374 1..374 2119 100 Plus
CG11377-PB 311 CG11377-PB 1..292 1..292 1689 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11694-PA 374 GI11694-PA 1..374 1..374 1391 70.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16615-PA 2094 GL16615-PA 1862..2094 142..374 1041 80.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10958-PA 363 GA10958-PA 1..363 11..374 1595 80.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16714-PA 374 GM16714-PA 1..374 1..374 1949 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23000-PA 374 GD23000-PA 1..374 1..374 1938 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13058-PA 373 GJ13058-PA 1..373 1..374 1408 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24605-PA 381 GK24605-PA 8..381 2..374 1457 73.9 Plus
Dwil\GK13761-PA 112 GK13761-PA 16..112 270..374 315 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16571-PA 374 GE16571-PA 1..374 1..374 1827 94.4 Plus