Clone RE58623 Report

Search the DGRC for RE58623

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:586
Well:23
Vector:pFlc-1
Associated Gene/TranscriptSpt-I-RA
Protein status:RE58623.pep: gold
Preliminary Size:1539
Sequenced Size:1783

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4016 2002-01-01 Sim4 clustering to Release 2
CG4016 2003-01-01 Sim4 clustering to Release 3
CG4016 2003-08-11 Blastp of sequenced clone
Spt-I 2008-04-29 Release 5.5 accounting
Spt-I 2008-08-15 Release 5.9 accounting
Spt-I 2008-12-18 5.12 accounting

Clone Sequence Records

RE58623.complete Sequence

1783 bp (1783 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010234

> RE58623.complete
AGTACATTCGTTCATCCATCTGTTTCGGCGGATATTTCACGCATTTTGCC
TATAGTTAACTGAGTTTTGTGAAAGGGCACGGAACCAGACTGTCAAAATG
GTGGCCATCCAATTGTTCAACGAAATCGGCAGTATTTTCCGAAACACCCC
CACGTTTGCTCTCGTCTTGGAGACCCTACTGCTCATAACCGTGATTTGGT
TGCTGCTCCACAGACGAGGAGGAGGTCGTCGCCGACAGCTGACCAAGGAG
GAGGAAGACCGAATAATCGCCGACTATGAACCAGAGCCCTTGGTGGCCGA
CACCGATCCCAATCATCCCCTGCTGCACACCCGCGTTGTGCAGTCCAGGG
TGGGCAAGCGCATCCAGGTCGATGGACACGACTGCCTAAATCTTGGCTCT
CACAACTATCTTGGCTTCCTCGAGGACCAGGAGATACTGGAGGAGGCCTG
CAAGTCGCTGCGCAAGTACGGAGTTGGATCTTGCGGACCTCGGGGCTTCT
ACGGCACTATGGACGTGCATCTGGACCTGGAGGATCGTATTGCCAAGTTC
ATGGGCCTGGAGGAGGCCATTGTCTATTCCTACGGCTTCTCGACCGTGGC
CAGTGCCATTCCGGCGTATGCCAAACGTGGCGACCTTATCTTTGTGGATG
AGGCTGTCAACTTTGCCATTCAGAAGGGTCTGGATGCTTCACGAAGCACA
ATCGTTTTCTTTAAGCACAATGACGTTGAGGATCTAGAACGTCTGCTGAT
TGAGCAAGAAAAACGAGACCAGAAAAATCCGAAAAAGGCGGCTAAGACAC
GTCGCTTCCTCGTCGCCGAGGGTATCTATATGAATACGGGCGAGATTTGC
CCACTTCCCGACCTGGTGGCCTTGCGTCAGAAGTACAAGCTGCGTTTGTT
CATCGACGAAAGCATCTCCTTTGGCACATTGGGCCAGGGTGGTCACGGAG
TTACGGAGCACTTTAATGTCGATCGTGATGAAGTCGATCTGATATCGGCC
GGCATGGAGGGTTCGATGGCAACAGTCGGTGGCTTCTGTGTTGGCTCGCA
CTTCATAGCCGAGCACCAGCGCCTCTCTGGCTTGGGCTACATCTTCTCGG
CCTCGCTGCCGCCCATGCTCACCCAGGCGGCTATTTCAGCGTTGGATCGT
TTCGAACGAGAACCACAAATCTTCGAGCAGCTGCAGGCAAAGTCTAAGAC
GTTGCACCAGAAGTTTTTGCGATTCAGCAAGCTAACCCTGCGCGGCGATG
AGGTGTCACCAGTGAAGCACTTGTATCTTGCCCAGCCCGCCGAGAACTTT
GACAAGGAACTGAAACTTCTAACAGAGCTGGCTGATAAGTGCATTGCTCG
TGGAGTGGCTGTGGTACAGGCTGCCTACCTGCAGAACAGGGAACGCCAAC
CAGTCCGTCCCAGCATTCGCATTGCTGTCAACCGTTTGCTGGAGAGTTCG
GAAATAGACAATGCGTTTGAGGTCATCGAGAGTGTTTCCAGCTCCGTCCT
ATAAGCCTTGTTGTTGGAAAGGAATGATCTTCTTTCGACAATGGCCTTGC
TGTTAAGTTTTAAGGCCTGCTGGCCCCATCATTTTTTCATCACTTCTTCA
CGACCAGTCCAGTATGAATTGTTTAAGTTAATAGCTAGCCTTGCACTTGC
TCTTTGCACTTTGTTGCATTGCATTTTAATGAAAAATTTTAAGTCTAGGA
AAACTTTCAAAGATTACACGTTATAGATAACAGAGCTGGTTAAATAAAAC
TATTAAGTTTATTTGGTAAAAAAAAAAAAAAAA

RE58623.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1930 Spt-I-RC 92..1859 1..1768 8840 100 Plus
Spt-I.b 1771 Spt-I.b 1..1771 1..1767 8770 99.7 Plus
Spt-I-RB 1797 Spt-I-RB 102..1797 72..1767 8480 100 Plus
Spt-I-RB 1797 Spt-I-RB 1..71 1..71 355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9056274..9056774 146..646 2505 100 Plus
chr2R 21145070 chr2R 9057638..9058067 1338..1767 2150 100 Plus
chr2R 21145070 chr2R 9057213..9057578 974..1339 1830 100 Plus
chr2R 21145070 chr2R 9056830..9057157 646..973 1640 100 Plus
chr2R 21145070 chr2R 9056137..9056211 71..145 375 100 Plus
chr2R 21145070 chr2R 9055823..9055893 1..71 310 95.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13168951..13169451 146..646 2505 100 Plus
2R 25286936 2R 13170315..13170745 1338..1768 2155 100 Plus
2R 25286936 2R 13169890..13170255 974..1339 1830 100 Plus
2R 25286936 2R 13169507..13169834 646..973 1640 100 Plus
2R 25286936 2R 13168814..13168888 71..145 375 100 Plus
2R 25286936 2R 13168500..13168570 1..71 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13170150..13170650 146..646 2505 100 Plus
2R 25260384 2R 13171514..13171944 1338..1768 2155 100 Plus
2R 25260384 2R 13171089..13171454 974..1339 1830 100 Plus
2R 25260384 2R 13170706..13171033 646..973 1640 100 Plus
2R 25260384 2R 13170013..13170087 71..145 375 100 Plus
2R 25260384 2R 13169699..13169769 1..71 355 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:02:46 has no hits.

RE58623.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:03:40 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9055823..9055893 1..71 95 -> Plus
chr2R 9056138..9056211 72..145 100 -> Plus
chr2R 9056274..9056773 146..645 100 -> Plus
chr2R 9056830..9057157 646..973 100 -> Plus
chr2R 9057213..9057578 974..1339 100 -> Plus
chr2R 9057640..9058067 1340..1767 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:51:36 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1407 98..1504 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:01 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 1..1407 98..1504 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:43 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1407 98..1504 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:43 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 1..1407 98..1504 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:15:15 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:51:36 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1767 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:01 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 3..1769 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:45 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:43 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 3..1769 1..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:40 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13169507..13169834 646..973 100 -> Plus
2R 13168500..13168570 1..71 100 -> Plus
2R 13168815..13168888 72..145 100 -> Plus
2R 13168951..13169450 146..645 100 -> Plus
2R 13169890..13170255 974..1339 100 -> Plus
2R 13170317..13170744 1340..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:40 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13169507..13169834 646..973 100 -> Plus
2R 13168500..13168570 1..71 100 -> Plus
2R 13168815..13168888 72..145 100 -> Plus
2R 13168951..13169450 146..645 100 -> Plus
2R 13169890..13170255 974..1339 100 -> Plus
2R 13170317..13170744 1340..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:40 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13169507..13169834 646..973 100 -> Plus
2R 13168500..13168570 1..71 100 -> Plus
2R 13168815..13168888 72..145 100 -> Plus
2R 13168951..13169450 146..645 100 -> Plus
2R 13169890..13170255 974..1339 100 -> Plus
2R 13170317..13170744 1340..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:01 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9057822..9058249 1340..1767 100   Plus
arm_2R 9056005..9056075 1..71 100 -> Plus
arm_2R 9056320..9056393 72..145 100 -> Plus
arm_2R 9056456..9056955 146..645 100 -> Plus
arm_2R 9057012..9057339 646..973 100 -> Plus
arm_2R 9057395..9057760 974..1339 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:50 Download gff for RE58623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13170150..13170649 146..645 100 -> Plus
2R 13170706..13171033 646..973 100 -> Plus
2R 13171089..13171454 974..1339 100 -> Plus
2R 13171516..13171943 1340..1767 100   Plus
2R 13169699..13169769 1..71 100 -> Plus
2R 13170014..13170087 72..145 100 -> Plus

RE58623.pep Sequence

Translation from 97 to 1503

> RE58623.pep
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVL*

RE58623.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11943-PA 468 GF11943-PA 1..468 1..468 2163 89.1 Plus
Dana\GF13862-PA 552 GF13862-PA 170..532 96..463 408 31.1 Plus
Dana\GF24511-PA 411 GF24511-PA 41..407 79..467 372 28.2 Plus
Dana\GF18993-PA 557 GF18993-PA 223..537 96..463 291 26.6 Plus
Dana\GF12883-PA 546 GF12883-PA 153..398 101..355 247 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20359-PA 468 GG20359-PA 1..468 1..468 2434 97.2 Plus
Dere\GG25163-PA 592 GG25163-PA 210..573 96..464 409 30.2 Plus
Dere\GG13887-PA 417 GG13887-PA 47..413 79..467 379 28.5 Plus
Dere\GG22911-PA 537 GG22911-PA 144..410 101..382 255 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20070-PA 468 GH20070-PA 1..468 1..468 2074 81.2 Plus
Dgri\GH13758-PA 630 GH13758-PA 248..614 96..467 415 29.7 Plus
Dgri\GH16379-PA 420 GH16379-PA 50..416 79..467 371 27.3 Plus
Dgri\GH20180-PA 541 GH20180-PA 148..414 101..382 262 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-PC 468 CG4016-PC 1..468 1..468 2382 100 Plus
Spt-I-PA 468 CG4016-PA 1..468 1..468 2382 100 Plus
Spt-I-PB 468 CG4016-PB 1..468 1..468 2382 100 Plus
lace-PB 597 CG4162-PB 215..581 96..467 408 29.6 Plus
lace-PA 597 CG4162-PA 215..581 96..467 408 29.6 Plus
CG10361-PA 417 CG10361-PA 47..413 79..467 384 28.5 Plus
Alas-PA 539 CG3017-PA 146..412 101..382 250 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18787-PA 465 GI18787-PA 1..461 1..464 2007 79.5 Plus
Dmoj\GI17899-PA 625 GI17899-PA 243..609 96..467 432 30.7 Plus
Dmoj\GI11571-PA 412 GI11571-PA 42..408 79..467 382 28 Plus
Dmoj\GI20706-PA 538 GI20706-PA 145..411 101..382 236 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16797-PA 468 GL16797-PA 1..468 1..468 2110 85 Plus
Dper\GL26430-PA 562 GL26430-PA 180..543 96..464 380 29.9 Plus
Dper\GL20821-PA 397 GL20821-PA 60..393 110..467 335 27.5 Plus
Dper\GL11642-PA 538 GL11642-PA 145..385 101..350 258 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24298-PA 468 GA24298-PA 1..468 1..468 2123 85.7 Plus
Dpse\GA17997-PA 593 GA17997-PA 211..574 96..464 391 30.2 Plus
Dpse\GA10272-PA 417 GA10272-PA 47..413 79..467 386 28.5 Plus
Dpse\GA15694-PA 538 GA15694-PA 145..385 101..350 258 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21446-PA 468 GM21446-PA 1..468 1..468 2446 97.9 Plus
Dsec\GM16091-PA 597 GM16091-PA 215..578 96..464 410 30.2 Plus
Dsec\GM24709-PA 417 GM24709-PA 47..413 79..467 382 28.7 Plus
Dsec\GM16072-PA 535 GM16072-PA 142..408 101..382 257 28.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10944-PA 468 GD10944-PA 1..468 1..468 2445 98.1 Plus
Dsim\GD24010-PA 597 GD24010-PA 215..578 96..464 408 30.2 Plus
Dsim\GD12774-PA 3873 GD12774-PA 3503..3869 79..467 383 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21814-PA 465 GJ21814-PA 1..465 1..468 2091 82.9 Plus
Dvir\GJ17404-PA 621 GJ17404-PA 239..605 96..467 421 30 Plus
Dvir\GJ11251-PA 424 GJ11251-PA 54..420 79..467 368 27.3 Plus
Dvir\GJ19743-PA 539 GJ19743-PA 146..413 101..382 240 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21908-PA 467 GK21908-PA 1..467 1..468 2056 82.9 Plus
Dwil\GK18137-PA 621 GK18137-PA 239..602 96..464 422 31 Plus
Dwil\GK23603-PA 426 GK23603-PA 55..422 79..467 361 27.5 Plus
Dwil\GK15724-PA 537 GK15724-PA 150..416 101..382 249 27.8 Plus
Dwil\GK22893-PA 83 GK22893-PA 18..76 83..148 196 60.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12518-PA 468 GE12518-PA 1..468 1..468 2420 97 Plus
Dyak\GE21012-PA 599 GE21012-PA 217..580 96..464 408 29.9 Plus
Dyak\GE20178-PA 417 GE20178-PA 47..413 79..467 369 28.2 Plus
Dyak\Alas-PA 538 GE14349-PA 145..411 101..382 255 28.5 Plus

RE58623.hyp Sequence

Translation from 97 to 1503

> RE58623.hyp
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVL*

RE58623.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-PC 468 CG4016-PC 1..468 1..468 2382 100 Plus
Spt-I-PA 468 CG4016-PA 1..468 1..468 2382 100 Plus
Spt-I-PB 468 CG4016-PB 1..468 1..468 2382 100 Plus
lace-PB 597 CG4162-PB 215..581 96..467 408 29.6 Plus
lace-PA 597 CG4162-PA 215..581 96..467 408 29.6 Plus