BDGP Sequence Production Resources |
Search the DGRC for RE58623
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 586 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spt-I-RA |
Protein status: | RE58623.pep: gold |
Preliminary Size: | 1539 |
Sequenced Size: | 1783 |
Gene | Date | Evidence |
---|---|---|
CG4016 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4016 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4016 | 2003-08-11 | Blastp of sequenced clone |
Spt-I | 2008-04-29 | Release 5.5 accounting |
Spt-I | 2008-08-15 | Release 5.9 accounting |
Spt-I | 2008-12-18 | 5.12 accounting |
1783 bp (1783 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010234
> RE58623.complete AGTACATTCGTTCATCCATCTGTTTCGGCGGATATTTCACGCATTTTGCC TATAGTTAACTGAGTTTTGTGAAAGGGCACGGAACCAGACTGTCAAAATG GTGGCCATCCAATTGTTCAACGAAATCGGCAGTATTTTCCGAAACACCCC CACGTTTGCTCTCGTCTTGGAGACCCTACTGCTCATAACCGTGATTTGGT TGCTGCTCCACAGACGAGGAGGAGGTCGTCGCCGACAGCTGACCAAGGAG GAGGAAGACCGAATAATCGCCGACTATGAACCAGAGCCCTTGGTGGCCGA CACCGATCCCAATCATCCCCTGCTGCACACCCGCGTTGTGCAGTCCAGGG TGGGCAAGCGCATCCAGGTCGATGGACACGACTGCCTAAATCTTGGCTCT CACAACTATCTTGGCTTCCTCGAGGACCAGGAGATACTGGAGGAGGCCTG CAAGTCGCTGCGCAAGTACGGAGTTGGATCTTGCGGACCTCGGGGCTTCT ACGGCACTATGGACGTGCATCTGGACCTGGAGGATCGTATTGCCAAGTTC ATGGGCCTGGAGGAGGCCATTGTCTATTCCTACGGCTTCTCGACCGTGGC CAGTGCCATTCCGGCGTATGCCAAACGTGGCGACCTTATCTTTGTGGATG AGGCTGTCAACTTTGCCATTCAGAAGGGTCTGGATGCTTCACGAAGCACA ATCGTTTTCTTTAAGCACAATGACGTTGAGGATCTAGAACGTCTGCTGAT TGAGCAAGAAAAACGAGACCAGAAAAATCCGAAAAAGGCGGCTAAGACAC GTCGCTTCCTCGTCGCCGAGGGTATCTATATGAATACGGGCGAGATTTGC CCACTTCCCGACCTGGTGGCCTTGCGTCAGAAGTACAAGCTGCGTTTGTT CATCGACGAAAGCATCTCCTTTGGCACATTGGGCCAGGGTGGTCACGGAG TTACGGAGCACTTTAATGTCGATCGTGATGAAGTCGATCTGATATCGGCC GGCATGGAGGGTTCGATGGCAACAGTCGGTGGCTTCTGTGTTGGCTCGCA CTTCATAGCCGAGCACCAGCGCCTCTCTGGCTTGGGCTACATCTTCTCGG CCTCGCTGCCGCCCATGCTCACCCAGGCGGCTATTTCAGCGTTGGATCGT TTCGAACGAGAACCACAAATCTTCGAGCAGCTGCAGGCAAAGTCTAAGAC GTTGCACCAGAAGTTTTTGCGATTCAGCAAGCTAACCCTGCGCGGCGATG AGGTGTCACCAGTGAAGCACTTGTATCTTGCCCAGCCCGCCGAGAACTTT GACAAGGAACTGAAACTTCTAACAGAGCTGGCTGATAAGTGCATTGCTCG TGGAGTGGCTGTGGTACAGGCTGCCTACCTGCAGAACAGGGAACGCCAAC CAGTCCGTCCCAGCATTCGCATTGCTGTCAACCGTTTGCTGGAGAGTTCG GAAATAGACAATGCGTTTGAGGTCATCGAGAGTGTTTCCAGCTCCGTCCT ATAAGCCTTGTTGTTGGAAAGGAATGATCTTCTTTCGACAATGGCCTTGC TGTTAAGTTTTAAGGCCTGCTGGCCCCATCATTTTTTCATCACTTCTTCA CGACCAGTCCAGTATGAATTGTTTAAGTTAATAGCTAGCCTTGCACTTGC TCTTTGCACTTTGTTGCATTGCATTTTAATGAAAAATTTTAAGTCTAGGA AAACTTTCAAAGATTACACGTTATAGATAACAGAGCTGGTTAAATAAAAC TATTAAGTTTATTTGGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt-I-RC | 1930 | Spt-I-RC | 92..1859 | 1..1768 | 8840 | 100 | Plus |
Spt-I.b | 1771 | Spt-I.b | 1..1771 | 1..1767 | 8770 | 99.7 | Plus |
Spt-I-RB | 1797 | Spt-I-RB | 102..1797 | 72..1767 | 8480 | 100 | Plus |
Spt-I-RB | 1797 | Spt-I-RB | 1..71 | 1..71 | 355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9056274..9056774 | 146..646 | 2505 | 100 | Plus |
chr2R | 21145070 | chr2R | 9057638..9058067 | 1338..1767 | 2150 | 100 | Plus |
chr2R | 21145070 | chr2R | 9057213..9057578 | 974..1339 | 1830 | 100 | Plus |
chr2R | 21145070 | chr2R | 9056830..9057157 | 646..973 | 1640 | 100 | Plus |
chr2R | 21145070 | chr2R | 9056137..9056211 | 71..145 | 375 | 100 | Plus |
chr2R | 21145070 | chr2R | 9055823..9055893 | 1..71 | 310 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13168951..13169451 | 146..646 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 13170315..13170745 | 1338..1768 | 2155 | 100 | Plus |
2R | 25286936 | 2R | 13169890..13170255 | 974..1339 | 1830 | 100 | Plus |
2R | 25286936 | 2R | 13169507..13169834 | 646..973 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 13168814..13168888 | 71..145 | 375 | 100 | Plus |
2R | 25286936 | 2R | 13168500..13168570 | 1..71 | 355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13170150..13170650 | 146..646 | 2505 | 100 | Plus |
2R | 25260384 | 2R | 13171514..13171944 | 1338..1768 | 2155 | 100 | Plus |
2R | 25260384 | 2R | 13171089..13171454 | 974..1339 | 1830 | 100 | Plus |
2R | 25260384 | 2R | 13170706..13171033 | 646..973 | 1640 | 100 | Plus |
2R | 25260384 | 2R | 13170013..13170087 | 71..145 | 375 | 100 | Plus |
2R | 25260384 | 2R | 13169699..13169769 | 1..71 | 355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9055823..9055893 | 1..71 | 95 | -> | Plus |
chr2R | 9056138..9056211 | 72..145 | 100 | -> | Plus |
chr2R | 9056274..9056773 | 146..645 | 100 | -> | Plus |
chr2R | 9056830..9057157 | 646..973 | 100 | -> | Plus |
chr2R | 9057213..9057578 | 974..1339 | 100 | -> | Plus |
chr2R | 9057640..9058067 | 1340..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 1..1407 | 98..1504 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RB | 1..1407 | 98..1504 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 1..1407 | 98..1504 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RB | 1..1407 | 98..1504 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 1..1767 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 3..1769 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt-I-RC | 3..1769 | 1..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13169507..13169834 | 646..973 | 100 | -> | Plus |
2R | 13168500..13168570 | 1..71 | 100 | -> | Plus |
2R | 13168815..13168888 | 72..145 | 100 | -> | Plus |
2R | 13168951..13169450 | 146..645 | 100 | -> | Plus |
2R | 13169890..13170255 | 974..1339 | 100 | -> | Plus |
2R | 13170317..13170744 | 1340..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13169507..13169834 | 646..973 | 100 | -> | Plus |
2R | 13168500..13168570 | 1..71 | 100 | -> | Plus |
2R | 13168815..13168888 | 72..145 | 100 | -> | Plus |
2R | 13168951..13169450 | 146..645 | 100 | -> | Plus |
2R | 13169890..13170255 | 974..1339 | 100 | -> | Plus |
2R | 13170317..13170744 | 1340..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13169507..13169834 | 646..973 | 100 | -> | Plus |
2R | 13168500..13168570 | 1..71 | 100 | -> | Plus |
2R | 13168815..13168888 | 72..145 | 100 | -> | Plus |
2R | 13168951..13169450 | 146..645 | 100 | -> | Plus |
2R | 13169890..13170255 | 974..1339 | 100 | -> | Plus |
2R | 13170317..13170744 | 1340..1767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9057822..9058249 | 1340..1767 | 100 | Plus | |
arm_2R | 9056005..9056075 | 1..71 | 100 | -> | Plus |
arm_2R | 9056320..9056393 | 72..145 | 100 | -> | Plus |
arm_2R | 9056456..9056955 | 146..645 | 100 | -> | Plus |
arm_2R | 9057012..9057339 | 646..973 | 100 | -> | Plus |
arm_2R | 9057395..9057760 | 974..1339 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13170150..13170649 | 146..645 | 100 | -> | Plus |
2R | 13170706..13171033 | 646..973 | 100 | -> | Plus |
2R | 13171089..13171454 | 974..1339 | 100 | -> | Plus |
2R | 13171516..13171943 | 1340..1767 | 100 | Plus | |
2R | 13169699..13169769 | 1..71 | 100 | -> | Plus |
2R | 13170014..13170087 | 72..145 | 100 | -> | Plus |
Translation from 97 to 1503
> RE58623.pep MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES SEIDNAFEVIESVSSSVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11943-PA | 468 | GF11943-PA | 1..468 | 1..468 | 2163 | 89.1 | Plus |
Dana\GF13862-PA | 552 | GF13862-PA | 170..532 | 96..463 | 408 | 31.1 | Plus |
Dana\GF24511-PA | 411 | GF24511-PA | 41..407 | 79..467 | 372 | 28.2 | Plus |
Dana\GF18993-PA | 557 | GF18993-PA | 223..537 | 96..463 | 291 | 26.6 | Plus |
Dana\GF12883-PA | 546 | GF12883-PA | 153..398 | 101..355 | 247 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20359-PA | 468 | GG20359-PA | 1..468 | 1..468 | 2434 | 97.2 | Plus |
Dere\GG25163-PA | 592 | GG25163-PA | 210..573 | 96..464 | 409 | 30.2 | Plus |
Dere\GG13887-PA | 417 | GG13887-PA | 47..413 | 79..467 | 379 | 28.5 | Plus |
Dere\GG22911-PA | 537 | GG22911-PA | 144..410 | 101..382 | 255 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20070-PA | 468 | GH20070-PA | 1..468 | 1..468 | 2074 | 81.2 | Plus |
Dgri\GH13758-PA | 630 | GH13758-PA | 248..614 | 96..467 | 415 | 29.7 | Plus |
Dgri\GH16379-PA | 420 | GH16379-PA | 50..416 | 79..467 | 371 | 27.3 | Plus |
Dgri\GH20180-PA | 541 | GH20180-PA | 148..414 | 101..382 | 262 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt-I-PC | 468 | CG4016-PC | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PA | 468 | CG4016-PA | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PB | 468 | CG4016-PB | 1..468 | 1..468 | 2382 | 100 | Plus |
lace-PB | 597 | CG4162-PB | 215..581 | 96..467 | 408 | 29.6 | Plus |
lace-PA | 597 | CG4162-PA | 215..581 | 96..467 | 408 | 29.6 | Plus |
CG10361-PA | 417 | CG10361-PA | 47..413 | 79..467 | 384 | 28.5 | Plus |
Alas-PA | 539 | CG3017-PA | 146..412 | 101..382 | 250 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18787-PA | 465 | GI18787-PA | 1..461 | 1..464 | 2007 | 79.5 | Plus |
Dmoj\GI17899-PA | 625 | GI17899-PA | 243..609 | 96..467 | 432 | 30.7 | Plus |
Dmoj\GI11571-PA | 412 | GI11571-PA | 42..408 | 79..467 | 382 | 28 | Plus |
Dmoj\GI20706-PA | 538 | GI20706-PA | 145..411 | 101..382 | 236 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16797-PA | 468 | GL16797-PA | 1..468 | 1..468 | 2110 | 85 | Plus |
Dper\GL26430-PA | 562 | GL26430-PA | 180..543 | 96..464 | 380 | 29.9 | Plus |
Dper\GL20821-PA | 397 | GL20821-PA | 60..393 | 110..467 | 335 | 27.5 | Plus |
Dper\GL11642-PA | 538 | GL11642-PA | 145..385 | 101..350 | 258 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24298-PA | 468 | GA24298-PA | 1..468 | 1..468 | 2123 | 85.7 | Plus |
Dpse\GA17997-PA | 593 | GA17997-PA | 211..574 | 96..464 | 391 | 30.2 | Plus |
Dpse\GA10272-PA | 417 | GA10272-PA | 47..413 | 79..467 | 386 | 28.5 | Plus |
Dpse\GA15694-PA | 538 | GA15694-PA | 145..385 | 101..350 | 258 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21446-PA | 468 | GM21446-PA | 1..468 | 1..468 | 2446 | 97.9 | Plus |
Dsec\GM16091-PA | 597 | GM16091-PA | 215..578 | 96..464 | 410 | 30.2 | Plus |
Dsec\GM24709-PA | 417 | GM24709-PA | 47..413 | 79..467 | 382 | 28.7 | Plus |
Dsec\GM16072-PA | 535 | GM16072-PA | 142..408 | 101..382 | 257 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10944-PA | 468 | GD10944-PA | 1..468 | 1..468 | 2445 | 98.1 | Plus |
Dsim\GD24010-PA | 597 | GD24010-PA | 215..578 | 96..464 | 408 | 30.2 | Plus |
Dsim\GD12774-PA | 3873 | GD12774-PA | 3503..3869 | 79..467 | 383 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21814-PA | 465 | GJ21814-PA | 1..465 | 1..468 | 2091 | 82.9 | Plus |
Dvir\GJ17404-PA | 621 | GJ17404-PA | 239..605 | 96..467 | 421 | 30 | Plus |
Dvir\GJ11251-PA | 424 | GJ11251-PA | 54..420 | 79..467 | 368 | 27.3 | Plus |
Dvir\GJ19743-PA | 539 | GJ19743-PA | 146..413 | 101..382 | 240 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21908-PA | 467 | GK21908-PA | 1..467 | 1..468 | 2056 | 82.9 | Plus |
Dwil\GK18137-PA | 621 | GK18137-PA | 239..602 | 96..464 | 422 | 31 | Plus |
Dwil\GK23603-PA | 426 | GK23603-PA | 55..422 | 79..467 | 361 | 27.5 | Plus |
Dwil\GK15724-PA | 537 | GK15724-PA | 150..416 | 101..382 | 249 | 27.8 | Plus |
Dwil\GK22893-PA | 83 | GK22893-PA | 18..76 | 83..148 | 196 | 60.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12518-PA | 468 | GE12518-PA | 1..468 | 1..468 | 2420 | 97 | Plus |
Dyak\GE21012-PA | 599 | GE21012-PA | 217..580 | 96..464 | 408 | 29.9 | Plus |
Dyak\GE20178-PA | 417 | GE20178-PA | 47..413 | 79..467 | 369 | 28.2 | Plus |
Dyak\Alas-PA | 538 | GE14349-PA | 145..411 | 101..382 | 255 | 28.5 | Plus |
Translation from 97 to 1503
> RE58623.hyp MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES SEIDNAFEVIESVSSSVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt-I-PC | 468 | CG4016-PC | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PA | 468 | CG4016-PA | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PB | 468 | CG4016-PB | 1..468 | 1..468 | 2382 | 100 | Plus |
lace-PB | 597 | CG4162-PB | 215..581 | 96..467 | 408 | 29.6 | Plus |
lace-PA | 597 | CG4162-PA | 215..581 | 96..467 | 408 | 29.6 | Plus |