Clone RE58665 Report

Search the DGRC for RE58665

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:586
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCG13865-RA
Protein status:RE58665.pep: gold
Preliminary Size:1170
Sequenced Size:1196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13865 2002-01-01 Sim4 clustering to Release 2
CG40301 2002-06-13 Blastp of sequenced clone
CG13865 2008-04-29 Release 5.5 accounting
CG13865 2008-08-15 Release 5.9 accounting
CG13865 2008-12-18 5.12 accounting

Clone Sequence Records

RE58665.complete Sequence

1196 bp (1196 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122232

> RE58665.complete
GAAGCACGCAGGGGTCCGGACGAAGCATAACATAATAATTTTTGGTTGTT
ATCTATTAAAAATTGCTGACCATGGCCTATGACTTGAAGAAGGAGTCAGA
CGTGAAGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCT
ATTCCGAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAG
GGCATCAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTG
CGACGACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTT
TCCTTGGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTAC
GAGTACTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCA
CTCCGGCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGA
ATGTGCCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAAC
GCCACTGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAA
GAAGGCGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCAT
CACCCCCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTA
AAAGACATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCG
CAATATGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATG
GGATCGAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTA
GAAATGCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCA
GGGCGTGGGCATGCCTAATTGATAATGCTTGATTCCTGATATTATCTGCT
GCTACTGTTTTTAGACCTTGCTTCAGGTCAGGTCAGGTTTTTCTTTACCT
TCTAGCCCTTTTCAGTAATTTTCAGTCAGTCTAATTTTGGTAGTTAAGCT
AACTAACTTGTGTTTGAGATTTCTGTGTACATAGCTGGCACTTGCATGCG
AAAGAGCGAGAAAGAGAAAATAAGTAACAATGGAAATTCCTAGATTTAAT
TGTTAAAGTTATTAAGTGATGATGAACCCTTTAAAAATTTTGTTGATACC
TTATATGAATATACAAACAAGTCTTACCAAATAAAAAAAAAAAAAA

RE58665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RA 1439 CG13865-RA 148..1328 1..1181 5905 100 Plus
CG13865.b 2742 CG13865.b 148..1328 1..1181 5905 100 Plus
CG13865.a 2099 CG13865.a 148..1328 1..1181 5905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22410503..22411224 460..1181 3595 99.9 Plus
chrX 22417052 chrX 22409869..22410161 170..462 1465 100 Plus
chrX 22417052 chrX 22409563..22409733 1..171 855 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23015172 460..1181 3610 100 Plus
X 23542271 X 23013817..23014109 170..462 1465 100 Plus
X 23542271 X 23013511..23013681 1..171 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22999543..23000264 460..1181 3610 100 Plus
X 23527363 X 22998909..22999201 170..462 1465 100 Plus
X 23527363 X 22998603..22998773 1..171 855 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:24:49 has no hits.

RE58665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:25:35 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22409563..22409733 1..171 100 -> Plus
chrX 22409871..22410160 172..461 100 -> Plus
chrX 22410505..22411224 462..1182 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:29 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 72..872 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:44 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 72..872 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:28:26 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 72..872 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:42 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 72..872 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:58:16 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 72..872 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:39 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..1178 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:44 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..1178 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:28:26 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 17..1194 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:43 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..1178 1..1178 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:58:16 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RC 17..1197 1..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:35 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013511..23013681 1..171 100 -> Plus
X 23013819..23014108 172..461 100 -> Plus
X 23014453..23015172 462..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:35 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013511..23013681 1..171 100 -> Plus
X 23013819..23014108 172..461 100 -> Plus
X 23014453..23015172 462..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:35 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013511..23013681 1..171 100 -> Plus
X 23013819..23014108 172..461 100 -> Plus
X 23014453..23015172 462..1182 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:28:26 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415347..22415517 1..171 100 -> Plus
arm_X 22415655..22415944 172..461 100 -> Plus
arm_X 22416289..22417008 462..1182 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:12 Download gff for RE58665.complete
Subject Subject Range Query Range Percent Splice Strand
X 22998911..22999200 172..461 100 -> Plus
X 22999545..23000264 462..1182 99   Plus
X 22998603..22998773 1..171 100 -> Plus

RE58665.pep Sequence

Translation from 71 to 871

> RE58665.pep
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPN*

RE58665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22021-PA 272 GF22021-PA 1..272 1..266 1188 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19759-PA 266 GG19759-PA 1..266 1..266 1312 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12047-PA 262 GH12047-PA 1..262 1..266 1219 86.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Coa7-PC 266 CG13865-PC 1..266 1..266 1424 100 Plus
Coa7-PA 266 CG13865-PA 1..266 1..266 1424 100 Plus
Coa7-PB 146 CG13865-PB 1..130 1..130 713 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16300-PA 255 GI16300-PA 1..255 1..266 1195 85.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18327-PA 269 GL18327-PA 1..33 1..33 172 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27511-PA 260 GA27511-PA 1..260 1..266 1202 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10064-PA 266 GM10064-PA 1..266 1..266 1285 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16688-PA 262 GJ16688-PA 1..262 1..266 1224 87.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19908-PA 269 GK19908-PA 1..269 1..266 1155 86.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17952-PA 266 GE17952-PA 1..266 1..266 1316 93.6 Plus

RE58665.hyp Sequence

Translation from 71 to 871

> RE58665.hyp
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPN*

RE58665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PC 266 CG13865-PC 1..266 1..266 1424 100 Plus
CG13865-PA 266 CG13865-PA 1..266 1..266 1424 100 Plus
CG13865-PB 146 CG13865-PB 1..130 1..130 713 100 Plus