BDGP Sequence Production Resources |
Search the DGRC for RE58665
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 586 |
Well: | 65 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13865-RA |
Protein status: | RE58665.pep: gold |
Preliminary Size: | 1170 |
Sequenced Size: | 1196 |
Gene | Date | Evidence |
---|---|---|
CG13865 | 2002-01-01 | Sim4 clustering to Release 2 |
CG40301 | 2002-06-13 | Blastp of sequenced clone |
CG13865 | 2008-04-29 | Release 5.5 accounting |
CG13865 | 2008-08-15 | Release 5.9 accounting |
CG13865 | 2008-12-18 | 5.12 accounting |
1196 bp (1196 high quality bases) assembled on 2002-06-13
GenBank Submission: AY122232
> RE58665.complete GAAGCACGCAGGGGTCCGGACGAAGCATAACATAATAATTTTTGGTTGTT ATCTATTAAAAATTGCTGACCATGGCCTATGACTTGAAGAAGGAGTCAGA CGTGAAGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCT ATTCCGAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAG GGCATCAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTG CGACGACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTT TCCTTGGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTAC GAGTACTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCA CTCCGGCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGA ATGTGCCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAAC GCCACTGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAA GAAGGCGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCAT CACCCCCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTA AAAGACATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCG CAATATGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATG GGATCGAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTA GAAATGCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCA GGGCGTGGGCATGCCTAATTGATAATGCTTGATTCCTGATATTATCTGCT GCTACTGTTTTTAGACCTTGCTTCAGGTCAGGTCAGGTTTTTCTTTACCT TCTAGCCCTTTTCAGTAATTTTCAGTCAGTCTAATTTTGGTAGTTAAGCT AACTAACTTGTGTTTGAGATTTCTGTGTACATAGCTGGCACTTGCATGCG AAAGAGCGAGAAAGAGAAAATAAGTAACAATGGAAATTCCTAGATTTAAT TGTTAAAGTTATTAAGTGATGATGAACCCTTTAAAAATTTTGTTGATACC TTATATGAATATACAAACAAGTCTTACCAAATAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 22410503..22411224 | 460..1181 | 3595 | 99.9 | Plus |
chrX | 22417052 | chrX | 22409869..22410161 | 170..462 | 1465 | 100 | Plus |
chrX | 22417052 | chrX | 22409563..22409733 | 1..171 | 855 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 22409563..22409733 | 1..171 | 100 | -> | Plus |
chrX | 22409871..22410160 | 172..461 | 100 | -> | Plus |
chrX | 22410505..22411224 | 462..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..801 | 72..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..801 | 72..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..801 | 72..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..801 | 72..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..801 | 72..872 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..1178 | 1..1178 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..1178 | 1..1178 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 17..1194 | 1..1178 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RA | 1..1178 | 1..1178 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13865-RC | 17..1197 | 1..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23013511..23013681 | 1..171 | 100 | -> | Plus |
X | 23013819..23014108 | 172..461 | 100 | -> | Plus |
X | 23014453..23015172 | 462..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23013511..23013681 | 1..171 | 100 | -> | Plus |
X | 23013819..23014108 | 172..461 | 100 | -> | Plus |
X | 23014453..23015172 | 462..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23013511..23013681 | 1..171 | 100 | -> | Plus |
X | 23013819..23014108 | 172..461 | 100 | -> | Plus |
X | 23014453..23015172 | 462..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 22415347..22415517 | 1..171 | 100 | -> | Plus |
arm_X | 22415655..22415944 | 172..461 | 100 | -> | Plus |
arm_X | 22416289..22417008 | 462..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22998911..22999200 | 172..461 | 100 | -> | Plus |
X | 22999545..23000264 | 462..1182 | 99 | Plus | |
X | 22998603..22998773 | 1..171 | 100 | -> | Plus |
Translation from 71 to 871
> RE58665.pep MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK KQHDTLGFQQGVGMPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22021-PA | 272 | GF22021-PA | 1..272 | 1..266 | 1188 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19759-PA | 266 | GG19759-PA | 1..266 | 1..266 | 1312 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12047-PA | 262 | GH12047-PA | 1..262 | 1..266 | 1219 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Coa7-PC | 266 | CG13865-PC | 1..266 | 1..266 | 1424 | 100 | Plus |
Coa7-PA | 266 | CG13865-PA | 1..266 | 1..266 | 1424 | 100 | Plus |
Coa7-PB | 146 | CG13865-PB | 1..130 | 1..130 | 713 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16300-PA | 255 | GI16300-PA | 1..255 | 1..266 | 1195 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18327-PA | 269 | GL18327-PA | 1..33 | 1..33 | 172 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27511-PA | 260 | GA27511-PA | 1..260 | 1..266 | 1202 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10064-PA | 266 | GM10064-PA | 1..266 | 1..266 | 1285 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16688-PA | 262 | GJ16688-PA | 1..262 | 1..266 | 1224 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19908-PA | 269 | GK19908-PA | 1..269 | 1..266 | 1155 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17952-PA | 266 | GE17952-PA | 1..266 | 1..266 | 1316 | 93.6 | Plus |
Translation from 71 to 871
> RE58665.hyp MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK KQHDTLGFQQGVGMPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13865-PC | 266 | CG13865-PC | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PA | 266 | CG13865-PA | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PB | 146 | CG13865-PB | 1..130 | 1..130 | 713 | 100 | Plus |