Clone RE58929 Report

Search the DGRC for RE58929

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:589
Well:29
Vector:pFlc-1
Associated Gene/TranscriptCG2765-RC
Protein status:RE58929.pep: gold
Preliminary Size:1380
Sequenced Size:2322

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2765 2002-10-09 Blastp of sequenced clone
CG2765 2003-01-01 Sim4 clustering to Release 3
CG2765 2008-04-29 Release 5.5 accounting
CG2765 2008-08-15 Release 5.9 accounting
CG2765 2008-12-18 5.12 accounting

Clone Sequence Records

RE58929.complete Sequence

2322 bp (2322 high quality bases) assembled on 2002-10-09

GenBank Submission: BT001691

> RE58929.complete
GTAATTTTTTCAAAATTCTTCTCGCTGACTGCTCGTGTCGAAACAGAAAC
TGAAATTAAATTAAACTCGGTGCGTGTGCAGACTACTTAGAATTCCCATA
TTTAATTGGTTCGGACTAGATCGACGGCCAAAGCCAAACCAAAGTCGGGG
TCTAATCGAGTACATGTAAATTTTTGGCATAAAACAGCCGCGACTTATTG
GAGGCAGCGCACTAGACACAGCAGTTCCGCCGGGGCAGCAGCTACTCCTA
TTCCGAATCCAAACCAATTCAGGCCAGACCTGCACTGCAACCGAGCTGAA
GCCAGCCCAGTCACCTGTGCCGATTTCGTAATCCCTGTCAGGAATACTCC
GATTCCAAACGCGAGTGAAAGTGCGCGAGTGTTGGTGCGGCCAAAGAAAA
TTTCTCGAACCACATATTTCCTGCAGCAGCAGTACATAGTCATCAGGAAT
ACACAGTCATCATGAGTGGATACACGGACCTCACCAAGCTGGAGACAAGT
CGAAACTGCCTGCGCCGCATCGCCCGTCACGATGAGCAGCAGTTCTCCAA
AGACAGCATTGTCAATGTGATGGAAAAGTTTGTAAAGACTGTCAACATTA
TGGACGACACCATACTGGTGCCATGCAGGCTCATGGATCGGCAGATCGGC
GACAGCACTGACATCATCCCAGCAACCGGCAAGGACTCGACCGCCAACCA
GCTGACACAGACCTCCAGTGCCCACGGCAAGCGGGGAGCGGCGCATTCAA
AAAATGTCCAAGACTTTCTCAGCGCCTCCGAGCTGTTCAATCTGTACAAC
ATGCTGAACTCCCTGAAAAAAGATCTGCTTTGGACCGCCAACCAGGAGGA
CGACGACCAGCAGCACTCCGAACAGCAGCTCAACGCCAGTACCAGTTCCA
CTTCGAGCTGCAATCCCAGCGAGAGCAAGACTGAATTCAACAGCGGCAGT
CCAAGCACAACCGCATCCGGAAGTGTCAAGGGTCATGTGCGCCGTACCTC
TACCGCATCCATGATGTCCACCAACTCGGTGAGCAACATGAGTGACTCTG
ACTCGGACATATCGCAGGAAAACGACTCGGGGCTAGAGTCCGATGGCAAC
AAGAGCGACAACGCCCAAAGCAGCGACGGCAGCGACATTGTAGACGTCGC
CAAATCGAAGCCGGGCTCGGGGGACAAGGCCACGGAGCTGGCCAAGCGCT
GCCGGAGGCATCTTAACGGTCTGTACCAGTGCCTGGAACAAATGACAGAG
GCGGCCAACTACCTGACCGCCAGATACCAAAGTGATATTGGGCCCGTCTA
GGACCGCCAACTCAAGGCCTTCTCGACCCTCTATTTCCTATGCCTCCTAC
ACTATCACTTTCTTTCGAGCTGGTCGGGGTTAACTTCATACCATAGTCGC
GGGCGGGTCTTTACACTCATTATTATCAAGTGTGAGGTATTTTTTTAACT
TTAACTATAACTGTATCAAAATATCTATATCTATGTATGTATATGATTAT
GTATATGTATCTTGAGGGGGTGCTAAGCAAGACATATGAGAATCGTATGT
GTGCAATAGGATTGTATAAATGTATAACTGAGGATGATAAATAACTGGTA
GATATAGTAGTGGATAAAGCAGCGCCTAAGCAACAAATTAACAAACGTTC
TATTGTAAAAATTGTAACCTCTGCGTTGCATCTCTCTTATGGGTTTAAGG
GTAGCCAAAGTCAAAAATCACAGAAGCGAGTCGCATCTATCCCAATCATT
CCTTCTGTACCCGTTGGGGCTCCATTGCGCCCAAGTCAACAAATAACCAC
CATGGCGCAGCGGTGGCACCGGCCCGAATATCCCTCTTCTTTACAATTGA
TTTTCGTATTTATATATTGGATAGATAGCTATGGGAACTGCAAAACAACA
CTAAAGCAAACGATGTTCAACAAGTACAAGAAATCTAATTTCTAACTAAA
TTACGAATACGAACGTAAGTGAAGTGGGAGCTATGCTTGTGGAGACGGGA
CCACTTCACTTTTAGCCTGTATGCAAATTTATATATTCCACAATTGTTAT
TGTAATTGTTTAAGCCAACTATTTGTGCCGTTATGTTTCGTTTGATTTCC
ACTTCGCAGCCGACCAGGGACACCCAGTGGTTACAGCAGGGGGGATCTCC
TAAATCCCACCAAAGGTGACCTGGATACCCGACTGTGAGTCCCTGGTTCG
GCAACGAGGACTGCAGAGCGAACTGTAAATTACTAACGTTAATAGCGCTT
GTGCGAGAGCTAAAAGAGAATTGTTTATACATAATAAATAAATTTTACTT
AGAAAGTAAAAAAAAAAAAAAA

RE58929.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2765-RA 2513 CG2765-RA 153..2457 1..2305 11510 99.9 Plus
CG2765-RC 1946 CG2765-RC 139..1942 502..2305 9005 99.9 Plus
CG2765-RE 2058 CG2765-RE 250..2053 502..2305 9005 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20845799..20847469 2305..642 8150 99.5 Minus
chr2R 21145070 chr2R 20850539..20851040 502..1 2510 100 Minus
chr2R 21145070 chr2R 20847569..20847711 644..502 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24959843..24961506 2305..642 8305 99.9 Minus
2R 25286936 2R 24964572..24965073 502..1 2510 100 Minus
2R 25286936 2R 24961606..24961748 644..502 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24961042..24962705 2305..642 8305 99.9 Minus
2R 25260384 2R 24965771..24966272 502..1 2510 100 Minus
2R 25260384 2R 24962805..24962947 644..502 715 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:41:16 has no hits.

RE58929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:42:17 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20845837..20847466 645..2267 97 <- Minus
chr2R 20847569..20847710 503..644 100 <- Minus
chr2R 20850539..20851040 1..502 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:38 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 1..840 462..1301 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:09 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 1..840 462..1301 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:44:21 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RE 1..732 570..1301 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:04 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 1..840 462..1301 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:25 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RE 1..732 570..1301 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:34:18 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 11..2317 1..2307 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:09 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 11..2317 1..2307 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:44:21 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RF 4..2310 1..2307 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:04 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RA 11..2317 1..2307 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:25 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
CG2765-RF 4..2310 1..2307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:17 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24959841..24961503 645..2307 99 <- Minus
2R 24961606..24961747 503..644 100 <- Minus
2R 24964572..24965073 1..502 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:17 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24959841..24961503 645..2307 99 <- Minus
2R 24961606..24961747 503..644 100 <- Minus
2R 24964572..24965073 1..502 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:17 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24959841..24961503 645..2307 99 <- Minus
2R 24961606..24961747 503..644 100 <- Minus
2R 24964572..24965073 1..502 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:44:21 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20847364..20849026 645..2307 99 <- Minus
arm_2R 20849129..20849270 503..644 100 <- Minus
arm_2R 20852095..20852596 1..502 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:44 Download gff for RE58929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24961058..24962720 645..2307 99 <- Minus
2R 24962823..24962964 503..644 100 <- Minus
2R 24965789..24966290 1..502 100   Minus

RE58929.pep Sequence

Translation from 461 to 1300

> RE58929.pep
MSGYTDLTKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDT
ILVPCRLMDRQIGDSTDIIPATGKDSTANQLTQTSSAHGKRGAAHSKNVQ
DFLSASELFNLYNMLNSLKKDLLWTANQEDDDQQHSEQQLNASTSSTSSC
NPSESKTEFNSGSPSTTASGSVKGHVRRTSTASMMSTNSVSNMSDSDSDI
SQENDSGLESDGNKSDNAQSSDGSDIVDVAKSKPGSGDKATELAKRCRRH
LNGLYQCLEQMTEAANYLTARYQSDIGPV*

RE58929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11520-PA 274 GF11520-PA 1..274 1..279 1197 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19871-PA 281 GG19871-PA 1..281 1..279 1357 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22045-PA 279 GH22045-PA 1..279 1..279 1045 75.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2765-PF 243 CG2765-PF 1..243 37..279 1238 100 Plus
CG2765-PD 243 CG2765-PD 1..243 37..279 1238 100 Plus
CG2765-PE 243 CG2765-PE 1..243 37..279 1238 100 Plus
CG2765-PC 243 CG2765-PC 1..243 37..279 1238 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19131-PA 287 GI19131-PA 1..287 1..279 1062 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10892-PA 280 GL10892-PA 1..280 1..279 1202 84.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15456-PA 280 GA15456-PA 1..280 1..279 1207 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11773-PA 532 GM11773-PA 261..532 11..279 1123 81.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22264-PA 281 GJ22264-PA 1..281 1..279 1084 76.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20750-PA 274 GK20750-PA 1..274 1..279 1062 76.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11396-PA 280 GE11396-PA 1..280 1..279 1402 95.7 Plus

RE58929.hyp Sequence

Translation from 461 to 1300

> RE58929.hyp
MSGYTDLTKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDT
ILVPCRLMDRQIGDSTDIIPATGKDSTANQLTQTSSAHGKRGAAHSKNVQ
DFLSASELFNLYNMLNSLKKDLLWTANQEDDDQQHSEQQLNASTSSTSSC
NPSESKTEFNSGSPSTTASGSVKGHVRRTSTASMMSTNSVSNMSDSDSDI
SQENDSGLESDGNKSDNAQSSDGSDIVDVAKSKPGSGDKATELAKRCRRH
LNGLYQCLEQMTEAANYLTARYQSDIGPV*

RE58929.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2765-PF 243 CG2765-PF 1..243 37..279 1238 100 Plus
CG2765-PD 243 CG2765-PD 1..243 37..279 1238 100 Plus
CG2765-PE 243 CG2765-PE 1..243 37..279 1238 100 Plus
CG2765-PC 243 CG2765-PC 1..243 37..279 1238 100 Plus