Clone RE58962 Report

Search the DGRC for RE58962

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:589
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG14565-RA
Protein status:RE58962.pep: gold
Preliminary Size:810
Sequenced Size:1036

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14565 2002-01-01 Sim4 clustering to Release 2
CG14565 2002-04-26 Blastp of sequenced clone
CG14565 2003-01-01 Sim4 clustering to Release 3
CG14565 2008-04-29 Release 5.5 accounting
CG14565 2008-08-15 Release 5.9 accounting
CG14565 2008-12-18 5.12 accounting

Clone Sequence Records

RE58962.complete Sequence

1036 bp (1036 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113505

> RE58962.complete
ATCAAATCGTCAGCAAATTGACCAGCGAACATGTGGAAAGGACTCGGTTG
CGCTCTACTCTGCCTGGCTGTGGTCCAGGCGGCTGTTATCCGCCCCGGAG
GGGATCCGGAGGTTCCGGAAACCACAACTAGTGCGGTTATCCGGGATCAA
GAGGGGAATGTCACCACCGCGGAGGCCACAACTTTGGCGGGTCCTGCTTT
GAGTCGCGACGAGGAGGCCAGCATACTGATTGATCCTGCCCCGGGCACTT
TACATGAGGATAGCGCCGTAGCGCCAGAGAAGTCCGGGAAGCTCCTGCTG
CTGAGTACAACACCCAAGCGACTCCATGAAATTGAGCGCCATCTCGAGGA
GCAGGACGACGAGGGGGAGGACAACAAGGCCGAAGTGGAGGTAACCACAA
CTGAGCAGCCAAAGGAAGCCGAGGAGCTAAAGGTGGACGAGGAGGAGGGC
GTCACCCCTGAAAGTTCAACCACAGAGAGCAGCACAACTGCGGCCACTAC
CAAACTGTTTGCCATCGACGCCAGTTCGGCCGGAGTGGAGTCCCCACCAC
CGAACGTGGCCATCTCCCTCTCCCAGGACAATGAGAATGCAACGCTATCG
ATTGCCGAGCAGCAGCAGGTGCCCGGCGACAATAGTGCCGCCGTGGAGCT
GGCCATCGTAGAGCCGGAGGCCGAGTACGTGCTAGTAGATGGCGGCCACG
ATGACCTGGACGTCCAGCTGGCCAGCTTCACTCACATCGGCAGCGATGCC
CACTTGCAGCCTGTTGTGCACTCCGTCGAAATCGTGCCCACCAGCTTCGA
TGATCCTTTGATTGTCAATTACGTGCACAATTTGCGCTGACTTTCCCAAG
GAGGCGTGCCAGGACGAATCAATTAACCCGGCGCGATGGCCACGGGGACT
CTGTTAAAGTTTCTTCTTAACTCCTTTTGTTACCTCTTCAATATGCTTAT
CGAATGGCTTGATGACTGGCATTTAACGAAATAAATAGGCCCATATATTA
AGGGCATCAGATTCTTTAAGAAAAAAAAAAAAAAAA

RE58962.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14565-RA 1021 CG14565-RA 1..1018 1..1018 5090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21732182..21733199 1018..1 5090 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21743247..21744264 1018..1 5090 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21736347..21737364 1018..1 5090 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:31:24 has no hits.

RE58962.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:32:11 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21732179..21733199 1..1020 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:40 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..810 31..840 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:46 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..810 31..840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:40 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..810 31..840 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:08 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..810 31..840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:26 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..810 31..840 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:04 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..1018 1..1020 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:46 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:40 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 6..1022 1..1017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:08 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 1..1018 1..1020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:26 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
CG14565-RA 6..1022 1..1017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:11 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21743244..21744264 1..1020 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:11 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21743244..21744264 1..1020 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:11 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21743244..21744264 1..1020 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:40 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21736344..21737364 1..1020 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:55 Download gff for RE58962.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21736344..21737364 1..1020 99   Minus

RE58962.pep Sequence

Translation from 30 to 839

> RE58962.pep
MWKGLGCALLCLAVVQAAVIRPGGDPEVPETTTSAVIRDQEGNVTTAEAT
TLAGPALSRDEEASILIDPAPGTLHEDSAVAPEKSGKLLLLSTTPKRLHE
IERHLEEQDDEGEDNKAEVEVTTTEQPKEAEELKVDEEEGVTPESSTTES
STTAATTKLFAIDASSAGVESPPPNVAISLSQDNENATLSIAEQQQVPGD
NSAAVELAIVEPEAEYVLVDGGHDDLDVQLASFTHIGSDAHLQPVVHSVE
IVPTSFDDPLIVNYVHNLR*

RE58962.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24636-PA 267 GF24636-PA 1..267 1..269 742 65.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13201-PA 269 GG13201-PA 1..269 1..269 1153 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15091-PA 292 GH15091-PA 1..292 1..269 473 46.5 Plus
Dgri\GH25243-PA 108 GH25243-PA 1..108 170..269 327 62.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14565-PA 269 CG14565-PA 1..269 1..269 1356 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13740-PA 298 GI13740-PA 27..298 15..269 462 46.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25271-PA 277 GL25271-PA 1..277 1..269 751 63.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13084-PA 275 GA13084-PA 1..275 1..269 766 63.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22111-PA 269 GM22111-PA 1..269 1..269 1222 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12088-PA 269 GD12088-PA 1..269 1..269 1243 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14085-PA 300 GJ14085-PA 1..300 1..269 533 47.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17121-PA 290 GK17121-PA 41..290 45..269 487 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22296-PA 269 GE22296-PA 1..269 1..269 1094 87.4 Plus
Dyak\GE22981-PA 269 GE22981-PA 1..269 1..269 1075 85.9 Plus

RE58962.hyp Sequence

Translation from 30 to 839

> RE58962.hyp
MWKGLGCALLCLAVVQAAVIRPGGDPEVPETTTSAVIRDQEGNVTTAEAT
TLAGPALSRDEEASILIDPAPGTLHEDSAVAPEKSGKLLLLSTTPKRLHE
IERHLEEQDDEGEDNKAEVEVTTTEQPKEAEELKVDEEEGVTPESSTTES
STTAATTKLFAIDASSAGVESPPPNVAISLSQDNENATLSIAEQQQVPGD
NSAAVELAIVEPEAEYVLVDGGHDDLDVQLASFTHIGSDAHLQPVVHSVE
IVPTSFDDPLIVNYVHNLR*

RE58962.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14565-PA 269 CG14565-PA 1..269 1..269 1356 100 Plus