RE59202.complete Sequence
504 bp (504 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113509
> RE59202.complete
AATAAGACATTCAGCATGCGCTTCTCGATCGTAATTGTTCTTTCCGTCCT
AGGATGCCTCCTGCTTAGCCAGGAGGGCAGTAGCAGCACATCTACATCCT
CGACGACGACCACAACCACCGACTCCTCTGCCACCACTACCACGGCTTCG
TCCGCCACCACTACCACCACTGCCTCTTCCGCATCCACCACGACCACTGC
CTCCTCCTCATCCTCTTCCTCTGCGGAGGCCAGGAGGCGCAGGCGCGCCC
GTCGCCGTCGTCTGGCGCGTGAGAGGCAACGAAGGGAGCGCAGAAGGCAG
CGCAGGACTCAGAGGCTGCGCCAGCAACTGGAGAATCAACGTCGACAGAT
CAACCAGCTGAGCGGATGAAGGTCTTCGGAAAGACTCGGCTTATGACAAT
TTAGGAAAAGCTGTTGTAAATATGTGAAAGCTAAATTCTTTCATTGTTCA
AGTTCGCCAAGATAATAAAACATTTGATTGTACATTCTGAAAAAAAAAAA
AAAA
RE59202.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12546-RA | 494 | CG12546-RA | 5..491 | 4..490 | 2435 | 100 | Plus |
CG14452-RA | 485 | CG14452-RA | 10..485 | 7..482 | 2380 | 100 | Plus |
CG32453-RA | 434 | CG32453-RA | 63..266 | 70..273 | 685 | 90.3 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 22682220..22682705 | 489..4 | 2430 | 100 | Minus |
chr3L | 24539361 | chr3L | 22684865..22685347 | 7..489 | 2415 | 100 | Plus |
chr3L | 24539361 | chr3L | 22681159..22681362 | 273..70 | 665 | 90.3 | Minus |
chr3L | 24539361 | chr3L | 22686205..22686408 | 70..273 | 665 | 90.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22693315..22693801 | 490..4 | 2435 | 100 | Minus |
3L | 28110227 | 3L | 22695961..22696444 | 7..490 | 2420 | 100 | Plus |
3L | 28110227 | 3L | 22692255..22692458 | 273..70 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22697301..22697504 | 70..273 | 665 | 90.3 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 22686415..22686901 | 490..4 | 2435 | 100 | Minus |
3L | 28103327 | 3L | 22689061..22689544 | 7..490 | 2420 | 100 | Plus |
3L | 28103327 | 3L | 22690401..22690604 | 70..273 | 685 | 90.3 | Plus |
3L | 28103327 | 3L | 22685355..22685558 | 273..70 | 685 | 90.3 | Minus |
Blast to na_te.dros performed on 2019-03-15 20:24:48 has no hits.
RE59202.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:25:33 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 22682220..22682501 | 208..489 | 100 | == | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:51 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14452-RA | 1..354 | 16..369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:52:37 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 1..354 | 16..369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:12:29 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 1..354 | 16..369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:01 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14452-RA | 1..354 | 16..369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:11 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 1..354 | 16..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:04:30 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 3..490 | 1..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:52:37 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 3..490 | 1..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:29 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 10..489 | 1..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:01 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 3..490 | 1..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:11 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12546-RA | 10..489 | 1..481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:33 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22693316..22693802 | 1..489 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:33 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22693316..22693802 | 1..489 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:33 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22693316..22693802 | 1..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:29 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22686416..22686902 | 1..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:17:05 Download gff for
RE59202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22686416..22686902 | 1..489 | 99 | | Minus |
RE59202.hyp Sequence
Translation from 3 to 368
> RE59202.hyp
KTFSMRFSIVIVLSVLGCLLLSQEGSSSTSTSSTTTTTTDSSATTTTASS
ATTTTTASSASTTTTASSSSSSSAEARRRRRARRRRLARERQRRERRRQR
RTQRLRQQLENQRRQINQLSG*
RE59202.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14452-PA | 117 | CG14452-PA | 1..117 | 5..121 | 547 | 100 | Plus |
CG12546-PA | 117 | CG12546-PA | 1..117 | 5..121 | 547 | 100 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..120 | 5..121 | 408 | 74.2 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 5..121 | 408 | 74.2 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..120 | 5..121 | 408 | 74.2 | Plus |
RE59202.pep Sequence
Translation from 15 to 368
> RE59202.pep
MRFSIVIVLSVLGCLLLSQEGSSSTSTSSTTTTTTDSSATTTTASSATTT
TTASSASTTTTASSSSSSSAEARRRRRARRRRLARERQRRERRRQRRTQR
LRQQLENQRRQINQLSG*
RE59202.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12546-PA | 117 | CG12546-PA | 1..117 | 1..117 | 547 | 100 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..117 | 1..117 | 547 | 100 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..120 | 1..117 | 408 | 74.2 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..120 | 1..117 | 408 | 74.2 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..120 | 1..117 | 408 | 74.2 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 1..117 | 408 | 74.2 | Plus |
CG14453-PA | 133 | CG14453-PA | 1..133 | 1..117 | 289 | 54.1 | Plus |
ng1-PA | 107 | CG10781-PA | 1..104 | 1..100 | 199 | 42.3 | Plus |
ng2-PA | 112 | CG14266-PA | 1..112 | 1..106 | 199 | 42 | Plus |
CG14265-PB | 119 | CG14265-PB | 1..118 | 1..109 | 192 | 40.7 | Plus |
CG12491-PA | 157 | CG12491-PA | 63..154 | 22..111 | 192 | 48.9 | Plus |
CG34105-PA | 157 | CG34105-PA | 63..154 | 22..111 | 192 | 48.9 | Plus |
CG32071-PA | 150 | CG32071-PA | 11..127 | 1..110 | 185 | 39.3 | Plus |
CG13560-PB | 181 | CG13560-PB | 85..177 | 21..111 | 178 | 43.2 | Plus |
CG13560-PA | 181 | CG13560-PA | 85..177 | 21..111 | 178 | 43.2 | Plus |
ng3-PB | 146 | CG10788-PB | 1..120 | 1..116 | 173 | 39.5 | Plus |
CG13560-PB | 181 | CG13560-PB | 100..180 | 22..102 | 172 | 45.7 | Plus |
CG13560-PA | 181 | CG13560-PA | 100..180 | 22..102 | 172 | 45.7 | Plus |
CG13560-PB | 181 | CG13560-PB | 85..177 | 13..104 | 169 | 43.2 | Plus |
CG13560-PA | 181 | CG13560-PA | 85..177 | 13..104 | 169 | 43.2 | Plus |
CG7377-PA | 94 | CG7377-PA | 1..92 | 1..93 | 161 | 41.8 | Plus |
CG33268-PA | 94 | CG33268-PA | 1..92 | 1..93 | 159 | 41.8 | Plus |
CG32188-PA | 105 | CG32188-PA | 1..102 | 1..103 | 157 | 41.7 | Plus |
CG32189-PA | 105 | CG32189-PA | 1..102 | 1..103 | 157 | 41.7 | Plus |
CG33267-PB | 94 | CG33267-PB | 1..92 | 1..93 | 154 | 40.8 | Plus |
CG12522-PA | 137 | CG12522-PA | 1..110 | 1..92 | 153 | 39.1 | Plus |
CG14237-PB | 121 | CG14237-PB | 10..101 | 8..108 | 147 | 39.6 | Plus |
CG32198-PB | 136 | CG32198-PB | 31..111 | 22..102 | 144 | 42 | Plus |
CG15741-PA | 135 | CG15741-PA | 39..130 | 18..103 | 143 | 34.8 | Plus |
CG14850-PA | 158 | CG14850-PA | 65..154 | 23..111 | 143 | 38.9 | Plus |
CG14850-PA | 158 | CG14850-PA | 71..154 | 21..104 | 139 | 40.2 | Plus |
CG14852-PA | 174 | CG14852-PA | 71..169 | 20..116 | 138 | 35.3 | Plus |
CG14850-PA | 158 | CG14850-PA | 49..156 | 17..108 | 137 | 35.2 | Plus |
CG13135-PC | 132 | CG13135-PC | 48..129 | 20..104 | 135 | 37.6 | Plus |
CG13135-PA | 132 | CG13135-PA | 48..129 | 20..104 | 135 | 37.6 | Plus |
CG42815-PA | 101 | CG32186-PA | 1..98 | 1..97 | 133 | 32.7 | Plus |