Clone RE59221 Report

Search the DGRC for RE59221

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:592
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG3819-RA
Protein status:RE59221.pep: gold
Preliminary Size:1272
Sequenced Size:1342

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3819 2002-01-01 Sim4 clustering to Release 2
CG3819 2002-04-26 Blastp of sequenced clone
CG3819 2003-01-01 Sim4 clustering to Release 3
CG3819 2008-04-29 Release 5.5 accounting
CG3819 2008-08-15 Release 5.9 accounting
CG3819 2008-12-18 5.12 accounting

Clone Sequence Records

RE59221.complete Sequence

1342 bp (1342 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113510

> RE59221.complete
ATCAGTTGCGAAACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCCTC
TTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCCTG
GGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGCAG
CTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGCCT
CTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACCGG
CTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAGCA
GCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGGGT
GGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATCAA
GTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTGCA
ATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCACGA
TTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACCAG
GTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGGAG
TGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATGTG
GACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAGCT
GGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCTGG
CCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGCAG
AGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTCAA
TGCTGGTAACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGTGGCCA
AGGAGAACAAGCACGTGGAGTGCTGGACGGGAGTCTGGGGTGTTACCACG
CTGCCCAACAAGAATGGGGAACAGAGGCAACTCTATTTGTCCCACGATAA
CAACGGCAACGGTCTGATTCCAGTTCCCAAGCTATACTTCCGAGTGGTAA
TCGAACCATCCACCAAGAAGGGCATCGTTCTGATCGGCGTCAACAATCCC
CATTTGAGTTTGGAGGAGATCAAGCGGGACTACATCCTGTGCACGGACGT
CAGCGACAGGATCAACTGGATCAGCTGGAAGAAGACGGACATCACCGCCG
GTTACTCCTACGCCTGCGAGGTTCCGGAGTTCCGCAAGAAGGTGACGCAT
CTGCCCGAGTTCTCCGTCAGCGGACTGTTGGTCTAAACTGGTTATGTTTG
AAATAATAAATAATACCTTTACATCGAAAAAAAAAAAAAAAA

RE59221.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RA 1497 CG3819-RA 78..1406 1..1329 6645 100 Plus
nc_13405.a 606 nc_13405.a 138..606 151..619 2345 100 Plus
CG6839-RA 1368 CG6839-RA 787..1177 742..1132 620 77.2 Plus
nc_13405.a 606 nc_13405.a 1..123 28..150 615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18910152..18911329 1326..149 5815 99.6 Minus
chr3L 24539361 chr3L 18911585..18911734 150..1 750 100 Minus
chr3L 24539361 chr3L 18908308..18908823 742..1257 705 75.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920521..18921701 1329..149 5905 100 Minus
3L 28110227 3L 18921957..18922106 150..1 750 100 Minus
3L 28110227 3L 18918680..18919195 742..1257 690 75.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18913621..18914801 1329..149 5905 100 Minus
3L 28103327 3L 18915057..18915206 150..1 750 100 Minus
3L 28103327 3L 18911780..18912170 742..1132 620 77.2 Plus
Blast to na_te.dros performed on 2019-03-16 02:45:53 has no hits.

RE59221.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:46:56 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18910152..18911327 151..1326 99 <- Minus
chr3L 18911585..18911734 1..150 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:26:52 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 15..1286 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:35 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 15..1286 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:29 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 15..1286 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:53 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 15..1286 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:06 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 15..1286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:49 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:35 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:29 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 3..1328 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:53 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:06 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 3..1328 1..1326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:56 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18920524..18921699 151..1326 100 <- Minus
3L 18921957..18922106 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:56 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18920524..18921699 151..1326 100 <- Minus
3L 18921957..18922106 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:56 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18920524..18921699 151..1326 100 <- Minus
3L 18921957..18922106 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:29 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18915057..18915206 1..150 100   Minus
arm_3L 18913624..18914799 151..1326 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:43 Download gff for RE59221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18913624..18914799 151..1326 100 <- Minus
3L 18915057..18915206 1..150 100   Minus

RE59221.hyp Sequence

Translation from 2 to 1285

> RE59221.hyp
QLRNMKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAA
GCSIKIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSS
LASPLSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCN
GGTTLIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGV
DRITFGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLA
RGHMGAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAK
ENKHVECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVI
EPSTKKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAG
YSYACEVPEFRKKVTHLPEFSVSGLLV*

RE59221.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PB 423 CG3819-PB 1..423 5..427 2242 100 Plus
CG3819-PA 423 CG3819-PA 1..423 5..427 2242 100 Plus
CG6839-PA 430 CG6839-PA 1..429 5..427 1227 54.8 Plus
CG14120-PA 1371 CG14120-PA 987..1369 52..426 950 47.1 Plus
CG14120-PA 1371 CG14120-PA 5..424 6..426 888 42.1 Plus
CG14120-PA 1371 CG14120-PA 593..975 42..426 737 35.8 Plus
CG14118-PA 439 CG14118-PA 1..428 9..418 560 29.5 Plus

RE59221.pep Sequence

Translation from 14 to 1285

> RE59221.pep
MKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAAGCSI
KIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSSLASP
LSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCNGGTT
LIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGVDRIT
FGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLARGHM
GAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAKENKH
VECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVIEPST
KKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAGYSYA
CEVPEFRKKVTHLPEFSVSGLLV*

RE59221.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10795-PA 424 GF10795-PA 1..424 1..423 2023 88.7 Plus
Dana\GF23654-PA 429 GF23654-PA 46..428 32..423 1263 59.7 Plus
Dana\GF23745-PA 1337 GF23745-PA 926..1335 25..422 965 46.5 Plus
Dana\GF23745-PA 1337 GF23745-PA 23..421 27..422 906 44.2 Plus
Dana\GF23745-PA 1337 GF23745-PA 557..939 38..422 801 37.9 Plus
Dana\GF23747-PA 436 GF23747-PA 53..426 45..415 578 31.3 Plus
Dana\GF16434-PA 351 GF16434-PA 85..350 128..407 270 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13440-PA 423 GG13440-PA 1..423 1..423 2208 97.2 Plus
Dere\GG16016-PA 430 GG16016-PA 1..429 1..423 1243 54.8 Plus
Dere\GG15605-PA 1395 GG15605-PA 1011..1393 48..422 936 47.1 Plus
Dere\GG15605-PA 1395 GG15605-PA 5..424 2..422 907 42.8 Plus
Dere\GG15605-PA 1395 GG15605-PA 617..999 38..422 754 35.8 Plus
Dere\GG15609-PA 439 GG15609-PA 3..429 7..415 588 30.3 Plus
Dere\GG12061-PA 346 GG12061-PA 84..345 128..407 240 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16960-PA 430 GH16960-PA 20..430 18..423 1794 80.8 Plus
Dgri\GH14605-PA 421 GH14605-PA 1..420 1..423 1237 55.2 Plus
Dgri\GH14485-PA 1418 GH14485-PA 1024..1411 48..422 943 46.2 Plus
Dgri\GH14485-PA 1418 GH14485-PA 1..420 1..422 911 42.5 Plus
Dgri\GH19648-PA 611 GH19648-PA 1..420 1..422 909 42.5 Plus
Dgri\GH14485-PA 1418 GH14485-PA 636..1013 43..422 787 37.1 Plus
Dgri\GH14489-PA 443 GH14489-PA 39..430 36..414 591 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PB 423 CG3819-PB 1..423 1..423 2242 100 Plus
CG3819-PA 423 CG3819-PA 1..423 1..423 2242 100 Plus
CG6839-PA 430 CG6839-PA 1..429 1..423 1227 54.8 Plus
CG14120-PA 1371 CG14120-PA 987..1369 48..422 950 47.1 Plus
CG14120-PA 1371 CG14120-PA 5..424 2..422 888 42.1 Plus
CG14120-PA 1371 CG14120-PA 593..975 38..422 737 35.8 Plus
CG14118-PA 439 CG14118-PA 1..428 5..414 560 29.5 Plus
CG14062-PB 346 CG14062-PB 105..345 150..407 235 26.7 Plus
CG12917-PB 356 CG12917-PB 192..354 232..406 183 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11823-PA 431 GI11823-PA 6..431 6..423 1795 78.4 Plus
Dmoj\GI13492-PA 429 GI13492-PA 1..429 1..423 1326 58.4 Plus
Dmoj\GI13641-PA 1340 GI13641-PA 945..1336 42..422 955 45.5 Plus
Dmoj\GI13641-PA 1340 GI13641-PA 1..420 1..422 888 41.7 Plus
Dmoj\GI13641-PA 1340 GI13641-PA 568..940 48..422 749 36.5 Plus
Dmoj\GI13645-PA 417 GI13645-PA 41..404 61..414 561 32.3 Plus
Dmoj\GI22179-PA 301 GI22179-PA 48..255 150..366 212 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22028-PA 424 GL22028-PA 1..424 1..423 1923 84.2 Plus
Dper\GL21712-PA 430 GL21712-PA 6..429 4..423 1271 56.4 Plus
Dper\GL25261-PA 1333 GL25261-PA 946..1331 48..422 939 45.2 Plus
Dper\GL25261-PA 1333 GL25261-PA 11..426 1..422 932 43.6 Plus
Dper\GL25261-PA 1333 GL25261-PA 557..934 43..422 807 38.4 Plus
Dper\GL14338-PA 445 GL14338-PA 1..434 1..414 516 26.9 Plus
Dper\GL11579-PA 371 GL11579-PA 119..329 137..360 192 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17708-PA 423 GA17708-PA 1..423 1..423 1940 84.7 Plus
Dpse\GA19896-PA 430 GA19896-PA 6..429 4..423 1271 56.4 Plus
Dpse\GA12772-PA 1333 GA12772-PA 946..1331 48..422 949 45.7 Plus
Dpse\GA12772-PA 1333 GA12772-PA 11..426 1..422 932 43.6 Plus
Dpse\GA12772-PA 1333 GA12772-PA 557..934 43..422 807 38.4 Plus
Dpse\GA22977-PA 445 GA22977-PA 1..434 1..414 512 26.9 Plus
Dpse\GA12733-PA 346 GA12733-PA 105..305 150..361 237 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14909-PA 423 GM14909-PA 1..423 1..423 2221 98.1 Plus
Dsec\GM15005-PA 430 GM15005-PA 1..429 1..423 1252 55.8 Plus
Dsec\GM25379-PA 1349 GM25379-PA 965..1347 48..422 931 46.9 Plus
Dsec\GM25379-PA 1349 GM25379-PA 5..424 2..422 919 42.6 Plus
Dsec\GM25379-PA 1349 GM25379-PA 576..953 43..422 761 36.6 Plus
Dsec\GM25382-PA 439 GM25382-PA 1..429 5..415 570 28.6 Plus
Dsec\GM12290-PA 346 GM12290-PA 105..345 150..407 238 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14783-PA 430 GD14783-PA 1..429 1..423 1252 55.8 Plus
Dsim\GD14412-PA 1338 GD14412-PA 954..1336 48..422 928 46.6 Plus
Dsim\GD14412-PA 1338 GD14412-PA 5..424 2..422 923 42.8 Plus
Dsim\GD12316-PA 314 GD12316-PA 153..314 262..423 863 97.5 Plus
Dsim\GD12316-PA 314 GD12316-PA 1..153 1..153 773 98 Plus
Dsim\GD14412-PA 1338 GD14412-PA 565..942 43..422 769 37.1 Plus
Dsim\GD14414-PA 439 GD14414-PA 3..429 7..415 578 29.8 Plus
Dsim\GD18024-PA 346 GD18024-PA 105..345 150..407 238 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13524-PA 429 GJ13524-PA 19..429 18..423 1784 81 Plus
Dvir\GJ11853-PA 428 GJ11853-PA 19..427 22..423 1302 59.9 Plus
Dvir\GJ13976-PA 1389 GJ13976-PA 992..1375 39..414 938 45.4 Plus
Dvir\GJ13976-PA 1389 GJ13976-PA 1..421 1..422 907 41.7 Plus
Dvir\GJ13976-PA 1389 GJ13976-PA 614..986 48..422 756 37.6 Plus
Dvir\GJ13978-PA 988 GJ13978-PA 572..974 36..414 601 33.3 Plus
Dvir\GJ24298-PA 514 GJ24298-PA 260..510 150..413 192 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12612-PA 424 GK12612-PA 1..424 1..423 1907 83.3 Plus
Dwil\GK10387-PA 432 GK10387-PA 8..431 4..423 1254 55.3 Plus
Dwil\GK16832-PA 1403 GK16832-PA 1027..1401 54..422 957 46.1 Plus
Dwil\GK16832-PA 1403 GK16832-PA 50..417 48..414 899 46.1 Plus
Dwil\GK16832-PA 1403 GK16832-PA 632..1010 42..422 776 35.9 Plus
Dwil\GK17354-PA 468 GK17354-PA 72..449 61..415 544 31.2 Plus
Dwil\GK10992-PA 255 GK10992-PA 1..205 151..364 224 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22538-PA 423 GE22538-PA 1..423 1..423 2195 96.5 Plus
Dyak\GE19581-PA 430 GE19581-PA 1..429 1..423 1256 55.3 Plus
Dyak\GE21933-PA 1340 GE21933-PA 5..424 2..422 938 43.5 Plus
Dyak\GE21933-PA 1340 GE21933-PA 956..1338 48..422 927 46.9 Plus
Dyak\GE21933-PA 1340 GE21933-PA 577..944 54..422 754 36.8 Plus
Dyak\GE21936-PA 439 GE21936-PA 3..429 7..415 607 30.8 Plus
Dyak\GE10502-PA 346 GE10502-PA 105..345 150..407 247 27.1 Plus