BDGP Sequence Production Resources |
Search the DGRC for RE59232
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 592 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31249-RA |
Protein status: | RE59232.pep: gold |
Preliminary Size: | 1843 |
Sequenced Size: | 1191 |
Gene | Date | Evidence |
---|---|---|
CG7477 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31249 | 2002-05-30 | Blastp of sequenced clone |
CG31249 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31249 | 2008-04-29 | Release 5.5 accounting |
CG31249 | 2008-08-15 | Release 5.9 accounting |
CG31249 | 2008-12-18 | 5.12 accounting |
1191 bp (1191 high quality bases) assembled on 2002-05-30
GenBank Submission: AY118399
> RE59232.complete CTTAAATTTGGGCGATAAGAATAAGCACAGCCGGCTGTAACATTTTTTGT AAATTAACAGAGCGAATCGATTTTTGTATAGTAATCCGTTGAAAGCATGC TGTCGCTCAAGATGAAACTCGAGGTACTGGGTCGTCCCGATGTTGACATC CCGGTGGTGATGAGCGACCGCAAGGAATTCGCCAACACAGTCCTCTGGTT GGAGGACCAGAAGATCCGGCTTTACTCCATAGAGGATCGCTGTAAGCTGC GCACTGTCGACAACCCTGAGATCTGGAAGGAGGGTTACTTAAAGTACTGT GCCGATTTGAGCATGCCGCCCCTGGAGACGCGGCAGGAGCAGCTGGCCTG GATTGTCAGCTATGCTGTGCGCCTGGACTTCCTCGATGATCCTGATCAGT TTGCCTCGATTAACACCAAACAGGTGCCACCCCAAAGCAATGGCAAGCAG TCCCAACAAAGGGTCCAGGCTATTTTCGATGGAAATATTAATACTCAGGA AAAAGCGTTCGTGGATGGAGTCCGGCTGCTGGCCAGCAAACTGAATGTGC CGCACCACCCGAACCATCTGTTGCAGCTGGAGGCTATCGCTCGCGTGGTG CACGAACGCCTCTCGCCCGCCGCCAAGGATCGCAAGCCGGTAGTGGGTAA ACCCTTCCCTTTTGACAAGGGAAACGACGTCGTCTCGTCCAACGACTCTG CCCTGGACCTGCCCATGCGCATACTACGTCTTCTCCAGATCCAGAGCCTA CGCGAGCTGCAGACACACATCAATGAGACCATTGTGGCGGTGCAGAACAT CACGGCCAATCCAAAGACTGATACCAAGCTGGGGAAAGTGGGATTCTAGA CGATTAACAGTAAAGGAACGCAATCGACACAATATAACATAAAAGGACAT AAAGAACATAAAAGTTTTAAAATTGCATCTATAAAATATCCTTTAAAGCC AAGCAACAACATTTAGCAGAAATCAATAGATAGATCAACAGCCAAGCTAT GAACAAGCAAACACCTTTTTTGAAAGCTATAAAATAAGAATCCTGTTGAT ATTTTATAATATTATTATTAATACAAACATATGTTTATTTATGATCCTCT TTCAAAAGATGCAATATTGTGTATGCCTATGTAATTAATTTATTTAAAAT AAATCATAAATTCATTAAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 13510027..13510701 | 1169..494 | 3300 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 13510853..13511180 | 493..166 | 1625 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 13511238..13511403 | 166..1 | 815 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 17685686..17686361 | 1169..494 | 3380 | 100 | Minus |
3R | 32079331 | 3R | 17686511..17686838 | 493..166 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 17686896..17687061 | 166..1 | 830 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17426517..17427192 | 1169..494 | 3380 | 100 | Minus |
3R | 31820162 | 3R | 17427342..17427669 | 493..166 | 1640 | 100 | Minus |
3R | 31820162 | 3R | 17427727..17427892 | 166..1 | 830 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 8024..8328 | 867..1163 | 157 | 58 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 920..1188 | 882..1161 | 150 | 56.9 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1132..1250 | 1028..1149 | 132 | 62.9 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 4987..5091 | 1126..1029 | 130 | 65.4 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1039..1183 | 1023..1167 | 129 | 58.8 | Plus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 284..333 | 1092..1041 | 129 | 75 | Minus |
Tc3 | 1743 | Tc3 TC3 1743bp | 231..320 | 1010..1096 | 126 | 64.4 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1109..1256 | 1016..1166 | 125 | 58.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1104..1243 | 1028..1167 | 122 | 58.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 132..199 | 1169..1101 | 117 | 65.2 | Minus |
Porto1 | 4682 | Porto1 DOC5 4682bp | 2778..2908 | 864..998 | 116 | 60.4 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 6749..6832 | 1102..1015 | 115 | 62.5 | Minus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 501..625 | 1173..1049 | 111 | 56.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 13510066..13510701 | 494..1130 | 95 | <- | Minus |
chr3R | 13510853..13511179 | 167..493 | 99 | <- | Minus |
chr3R | 13511238..13511403 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..753 | 97..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..753 | 97..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..753 | 97..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..753 | 97..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..753 | 97..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..1174 | 1..1175 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..1166 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 11..1176 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 1..1174 | 1..1175 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31249-RA | 11..1176 | 1..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685677..17686361 | 494..1175 | 99 | <- | Minus |
3R | 17686511..17686837 | 167..493 | 100 | <- | Minus |
3R | 17686896..17687061 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685677..17686361 | 494..1175 | 99 | <- | Minus |
3R | 17686511..17686837 | 167..493 | 100 | <- | Minus |
3R | 17686896..17687061 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685677..17686361 | 494..1175 | 99 | <- | Minus |
3R | 17686511..17686837 | 167..493 | 100 | <- | Minus |
3R | 17686896..17687061 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 13511399..13512083 | 494..1175 | 99 | <- | Minus |
arm_3R | 13512233..13512559 | 167..493 | 100 | <- | Minus |
arm_3R | 13512618..13512783 | 1..166 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17426508..17427192 | 494..1175 | 99 | <- | Minus |
3R | 17427342..17427668 | 167..493 | 100 | <- | Minus |
3R | 17427727..17427892 | 1..166 | 100 | Minus |
Translation from 96 to 848
> RE59232.pep MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17173-PA | 247 | GF17173-PA | 2..246 | 4..249 | 1055 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16759-PA | 247 | GG16759-PA | 2..246 | 4..249 | 1113 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19520-PA | 248 | GH19520-PA | 2..247 | 4..249 | 880 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31249-PA | 250 | CG31249-PA | 1..250 | 1..250 | 1286 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22997-PA | 248 | GI22997-PA | 2..247 | 4..249 | 907 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21702-PA | 248 | GL21702-PA | 2..248 | 4..250 | 953 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16123-PA | 248 | GA16123-PA | 2..248 | 4..250 | 948 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15348-PA | 249 | GM15348-PA | 1..249 | 1..250 | 1204 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15096-PA | 249 | GD15096-PA | 1..249 | 1..250 | 1226 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24590-PA | 248 | GJ24590-PA | 2..247 | 4..249 | 919 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13788-PA | 250 | GK13788-PA | 2..249 | 4..249 | 957 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25254-PA | 247 | GE25254-PA | 2..246 | 4..249 | 1091 | 82.5 | Plus |
Translation from 96 to 848
> RE59232.hyp MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31249-PA | 250 | CG31249-PA | 1..250 | 1..250 | 1286 | 100 | Plus |