BDGP Sequence Production Resources |
Search the DGRC for RE59335
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 593 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(1)sc-RA |
Protein status: | RE59335.pep: validated not full length |
Preliminary Size: | 774 |
Sequenced Size: | 1111 |
Gene | Date | Evidence |
---|---|---|
CG3839 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3839 | 2002-06-10 | Blastp of sequenced clone |
CG3839 | 2003-01-01 | Sim4 clustering to Release 3 |
l(1)sc | 2008-04-29 | Release 5.5 accounting |
l(1)sc | 2008-08-15 | Release 5.9 accounting |
l(1)sc | 2008-12-18 | 5.12 accounting |
1111 bp (1111 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121693
> RE59335.complete ATCGTTGCGGAATCTGATTCCACACAGTCAACATCTGTAAACTAAATCTT AGAAAACTCTCGCAAGGATTACCATGACGAGCATTTGCAGCAGCAAATTC CAGCAGCAGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACA TCAGCATCACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATAC CTTTGGGTACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAAT GTTGGACCCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACAT GCCCTATGGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAAC GCAATCGCGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCAT TTGCCTCAAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAG CAAGAAGTTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTC GAGGACTACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCAC ATCTACAATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGA TTACAACGATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCC AGTCTGCCCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTAC TCCGGATCCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGA GCAGGACCTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAG ATGACGAGGAGCTACTCGATTATATTTCATCTTGGCAAGAGCGGTGAAGG GGTCTTACTAAAAGTCCCAAACAAACAAATATTGTACAAACTGTAAATAC CCTAAATTGTTGCCTTAGTGAGTGTAAAACCAAGTCTCAAATTTAACATT AGCCTCTAAGTTACCCCATATTTTTTTTTATTATATTTTAACGCAATGGA AGACATATTTTTTTCATAGTTATAAGTTTGTTATAAGAATGGAAGACACT AAACTAACTACTTTTAAGCCAAAATAAAAACATATTGATAAATTTAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)sc-RA | 1095 | l(1)sc-RA | 1..1095 | 1..1095 | 5415 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 303749..304859 | 1..1095 | 5220 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 409723..410819 | 1..1097 | 5425 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 417821..418917 | 1..1097 | 5425 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6874 | 65..181 | 187 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2494 | 65..243 | 161 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2485 | 65..183 | 140 | 60.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 303749..304751 | 1..1003 | 99 | <- | Plus |
chrX | 304766..304859 | 1004..1095 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..774 | 74..847 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..774 | 74..847 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..774 | 74..847 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..774 | 74..847 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..774 | 74..847 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..1095 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..1095 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..1095 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 1..1095 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)sc-RA | 3..1097 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 409723..410817 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 409723..410817 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 409723..410817 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 303756..304850 | 1..1095 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 417821..418915 | 1..1095 | 99 | Plus |
Translation from 73 to 846
> RE59335.pep MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY ISSWQER*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21451-PA | 257 | GF21451-PA | 1..257 | 1..257 | 809 | 70.8 | Plus |
Dana\GF21450-PA | 326 | GF21450-PA | 69..145 | 77..151 | 269 | 68.8 | Plus |
Dana\GF21449-PA | 415 | GF21449-PA | 13..97 | 71..151 | 245 | 60 | Plus |
Dana\GF21452-PA | 483 | GF21452-PA | 177..250 | 79..149 | 175 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\l(1)sc-PA | 256 | GG12784-PA | 1..256 | 1..257 | 1137 | 93.4 | Plus |
Dere\sc-PA | 335 | GG12783-PA | 80..156 | 77..151 | 268 | 68.8 | Plus |
Dere\ac-PA | 201 | GG12781-PA | 24..199 | 83..256 | 265 | 41.7 | Plus |
Dere\ase-PA | 484 | GG12785-PA | 154..227 | 79..149 | 172 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24341-PA | 284 | GH24341-PA | 1..284 | 1..257 | 646 | 60.1 | Plus |
Dgri\GH24340-PA | 378 | GH24340-PA | 116..184 | 84..151 | 267 | 72.5 | Plus |
Dgri\GH24339-PA | 252 | GH24339-PA | 57..133 | 76..151 | 243 | 63.7 | Plus |
Dgri\GH24345-PA | 574 | GH24345-PA | 222..277 | 96..149 | 164 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)sc-PA | 257 | CG3839-PA | 1..257 | 1..257 | 1330 | 99.6 | Plus |
sc-PA | 345 | CG3827-PA | 92..345 | 77..257 | 305 | 37.8 | Plus |
ac-PA | 201 | CG3796-PA | 24..199 | 83..256 | 291 | 41.7 | Plus |
ase-PA | 486 | CG3258-PA | 96..247 | 25..167 | 222 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10999-PA | 266 | GI10999-PA | 1..266 | 1..257 | 512 | 55 | Plus |
Dmoj\GI10998-PA | 361 | GI10998-PA | 100..168 | 84..151 | 269 | 72.5 | Plus |
Dmoj\GI10997-PA | 262 | GI10997-PA | 60..131 | 84..151 | 246 | 68.1 | Plus |
Dmoj\GI11000-PA | 664 | GI11000-PA | 211..284 | 79..149 | 169 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20379-PA | 264 | GL20379-PA | 1..264 | 1..257 | 720 | 68.2 | Plus |
Dper\GL20377-PA | 225 | GL20377-PA | 8..100 | 66..151 | 244 | 58.1 | Plus |
Dper\GL20378-PA | 347 | GL20378-PA | 100..163 | 89..151 | 241 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17723-PA | 264 | GA17723-PA | 1..264 | 1..257 | 720 | 68.2 | Plus |
Dpse\GA29095-PA | 371 | GA29095-PA | 108..176 | 84..151 | 269 | 72.5 | Plus |
Dpse\GA17691-PA | 226 | GA17691-PA | 8..100 | 66..151 | 244 | 58.1 | Plus |
Dpse\GA17007-PA | 619 | GA17007-PA | 202..257 | 96..149 | 169 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19063-PA | 202 | GM19063-PA | 1..202 | 1..257 | 769 | 73.5 | Plus |
Dsec\GM19062-PA | 334 | GM19062-PA | 88..169 | 84..164 | 269 | 64.6 | Plus |
Dsec\GM19060-PA | 201 | GM19060-PA | 24..199 | 83..256 | 265 | 41.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\l(1)sc-PA | 257 | GD16503-PA | 1..257 | 1..257 | 1331 | 97.7 | Plus |
Dsim\sc-PA | 334 | GD16501-PA | 88..169 | 84..164 | 269 | 64.6 | Plus |
Dsim\GD16504-PA | 466 | GD16504-PA | 154..227 | 79..149 | 171 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15597-PA | 284 | GJ15597-PA | 1..284 | 1..257 | 723 | 63.3 | Plus |
Dvir\sc-PA | 351 | GJ15596-PA | 97..165 | 84..151 | 268 | 72.5 | Plus |
Dvir\ac-PA | 220 | GJ15592-PA | 28..100 | 83..151 | 255 | 68.5 | Plus |
Dvir\GJ15598-PA | 616 | GJ15598-PA | 140..247 | 47..149 | 170 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25271-PA | 280 | GK25271-PA | 1..280 | 1..257 | 647 | 60.5 | Plus |
Dwil\GK25270-PA | 377 | GK25270-PA | 130..198 | 84..151 | 267 | 72.5 | Plus |
Dwil\GK25269-PA | 236 | GK25269-PA | 30..101 | 84..151 | 243 | 68.1 | Plus |
Dwil\GK25272-PA | 652 | GK25272-PA | 207..280 | 79..149 | 169 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\l(1)sc-PA | 256 | GE16611-PA | 1..256 | 1..257 | 1076 | 93.4 | Plus |
Dyak\ac-PA | 201 | GE16609-PA | 24..199 | 83..256 | 272 | 42.2 | Plus |
Dyak\sc-PA | 334 | GE16610-PA | 88..156 | 84..151 | 267 | 72.5 | Plus |
Dyak\ase-PA | 494 | GE16612-PA | 154..227 | 79..149 | 172 | 63.5 | Plus |
Translation from 73 to 846
> RE59335.hyp MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY ISSWQEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)sc-PA | 257 | CG3839-PA | 1..257 | 1..257 | 1334 | 100 | Plus |
sc-PA | 345 | CG3827-PA | 92..345 | 77..257 | 309 | 38.2 | Plus |
ac-PA | 201 | CG3796-PA | 24..199 | 83..256 | 291 | 41.7 | Plus |
ase-PA | 486 | CG3258-PA | 96..247 | 25..167 | 222 | 40.1 | Plus |