Clone RE59335 Report

Search the DGRC for RE59335

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:593
Well:35
Vector:pFlc-1
Associated Gene/Transcriptl(1)sc-RA
Protein status:RE59335.pep: validated not full length
Preliminary Size:774
Sequenced Size:1111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3839 2002-01-01 Sim4 clustering to Release 2
CG3839 2002-06-10 Blastp of sequenced clone
CG3839 2003-01-01 Sim4 clustering to Release 3
l(1)sc 2008-04-29 Release 5.5 accounting
l(1)sc 2008-08-15 Release 5.9 accounting
l(1)sc 2008-12-18 5.12 accounting

Clone Sequence Records

RE59335.complete Sequence

1111 bp (1111 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121693

> RE59335.complete
ATCGTTGCGGAATCTGATTCCACACAGTCAACATCTGTAAACTAAATCTT
AGAAAACTCTCGCAAGGATTACCATGACGAGCATTTGCAGCAGCAAATTC
CAGCAGCAGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACA
TCAGCATCACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATAC
CTTTGGGTACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAAT
GTTGGACCCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACAT
GCCCTATGGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAAC
GCAATCGCGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCAT
TTGCCTCAAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAG
CAAGAAGTTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTC
GAGGACTACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCAC
ATCTACAATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGA
TTACAACGATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCC
AGTCTGCCCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTAC
TCCGGATCCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGA
GCAGGACCTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAG
ATGACGAGGAGCTACTCGATTATATTTCATCTTGGCAAGAGCGGTGAAGG
GGTCTTACTAAAAGTCCCAAACAAACAAATATTGTACAAACTGTAAATAC
CCTAAATTGTTGCCTTAGTGAGTGTAAAACCAAGTCTCAAATTTAACATT
AGCCTCTAAGTTACCCCATATTTTTTTTTATTATATTTTAACGCAATGGA
AGACATATTTTTTTCATAGTTATAAGTTTGTTATAAGAATGGAAGACACT
AAACTAACTACTTTTAAGCCAAAATAAAAACATATTGATAAATTTAAAAA
AAAAAAAAAAA

RE59335.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-RA 1095 l(1)sc-RA 1..1095 1..1095 5415 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 303749..304859 1..1095 5220 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 409723..410819 1..1097 5425 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 417821..418917 1..1097 5425 99.6 Plus
Blast to na_te.dros performed 2019-03-15 20:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6874 65..181 187 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2494 65..243 161 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2362..2485 65..183 140 60.8 Plus

RE59335.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:03:49 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 303749..304751 1..1003 99 <- Plus
chrX 304766..304859 1004..1095 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:09 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 74..847 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:51 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 74..847 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:20 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 74..847 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:19 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 74..847 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:57 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 74..847 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:56 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..1095 1..1095 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:51 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..1095 1..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:20 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..1095 1..1095 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:16:19 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..1095 1..1095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:57 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 3..1097 1..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:49 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
X 409723..410817 1..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:49 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
X 409723..410817 1..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:49 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
X 409723..410817 1..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:20 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 303756..304850 1..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:36 Download gff for RE59335.complete
Subject Subject Range Query Range Percent Splice Strand
X 417821..418915 1..1095 99   Plus

RE59335.pep Sequence

Translation from 73 to 846

> RE59335.pep
MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ
NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN
NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD
DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY
HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY
ISSWQER*

RE59335.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21451-PA 257 GF21451-PA 1..257 1..257 809 70.8 Plus
Dana\GF21450-PA 326 GF21450-PA 69..145 77..151 269 68.8 Plus
Dana\GF21449-PA 415 GF21449-PA 13..97 71..151 245 60 Plus
Dana\GF21452-PA 483 GF21452-PA 177..250 79..149 175 64.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\l(1)sc-PA 256 GG12784-PA 1..256 1..257 1137 93.4 Plus
Dere\sc-PA 335 GG12783-PA 80..156 77..151 268 68.8 Plus
Dere\ac-PA 201 GG12781-PA 24..199 83..256 265 41.7 Plus
Dere\ase-PA 484 GG12785-PA 154..227 79..149 172 63.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24341-PA 284 GH24341-PA 1..284 1..257 646 60.1 Plus
Dgri\GH24340-PA 378 GH24340-PA 116..184 84..151 267 72.5 Plus
Dgri\GH24339-PA 252 GH24339-PA 57..133 76..151 243 63.7 Plus
Dgri\GH24345-PA 574 GH24345-PA 222..277 96..149 164 58.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-PA 257 CG3839-PA 1..257 1..257 1330 99.6 Plus
sc-PA 345 CG3827-PA 92..345 77..257 305 37.8 Plus
ac-PA 201 CG3796-PA 24..199 83..256 291 41.7 Plus
ase-PA 486 CG3258-PA 96..247 25..167 222 40.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10999-PA 266 GI10999-PA 1..266 1..257 512 55 Plus
Dmoj\GI10998-PA 361 GI10998-PA 100..168 84..151 269 72.5 Plus
Dmoj\GI10997-PA 262 GI10997-PA 60..131 84..151 246 68.1 Plus
Dmoj\GI11000-PA 664 GI11000-PA 211..284 79..149 169 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20379-PA 264 GL20379-PA 1..264 1..257 720 68.2 Plus
Dper\GL20377-PA 225 GL20377-PA 8..100 66..151 244 58.1 Plus
Dper\GL20378-PA 347 GL20378-PA 100..163 89..151 241 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17723-PA 264 GA17723-PA 1..264 1..257 720 68.2 Plus
Dpse\GA29095-PA 371 GA29095-PA 108..176 84..151 269 72.5 Plus
Dpse\GA17691-PA 226 GA17691-PA 8..100 66..151 244 58.1 Plus
Dpse\GA17007-PA 619 GA17007-PA 202..257 96..149 169 58.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19063-PA 202 GM19063-PA 1..202 1..257 769 73.5 Plus
Dsec\GM19062-PA 334 GM19062-PA 88..169 84..164 269 64.6 Plus
Dsec\GM19060-PA 201 GM19060-PA 24..199 83..256 265 41.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\l(1)sc-PA 257 GD16503-PA 1..257 1..257 1331 97.7 Plus
Dsim\sc-PA 334 GD16501-PA 88..169 84..164 269 64.6 Plus
Dsim\GD16504-PA 466 GD16504-PA 154..227 79..149 171 63.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15597-PA 284 GJ15597-PA 1..284 1..257 723 63.3 Plus
Dvir\sc-PA 351 GJ15596-PA 97..165 84..151 268 72.5 Plus
Dvir\ac-PA 220 GJ15592-PA 28..100 83..151 255 68.5 Plus
Dvir\GJ15598-PA 616 GJ15598-PA 140..247 47..149 170 48.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25271-PA 280 GK25271-PA 1..280 1..257 647 60.5 Plus
Dwil\GK25270-PA 377 GK25270-PA 130..198 84..151 267 72.5 Plus
Dwil\GK25269-PA 236 GK25269-PA 30..101 84..151 243 68.1 Plus
Dwil\GK25272-PA 652 GK25272-PA 207..280 79..149 169 63.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\l(1)sc-PA 256 GE16611-PA 1..256 1..257 1076 93.4 Plus
Dyak\ac-PA 201 GE16609-PA 24..199 83..256 272 42.2 Plus
Dyak\sc-PA 334 GE16610-PA 88..156 84..151 267 72.5 Plus
Dyak\ase-PA 494 GE16612-PA 154..227 79..149 172 63.5 Plus

RE59335.hyp Sequence

Translation from 73 to 846

> RE59335.hyp
MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ
NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN
NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD
DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY
HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY
ISSWQEQ*

RE59335.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-PA 257 CG3839-PA 1..257 1..257 1334 100 Plus
sc-PA 345 CG3827-PA 92..345 77..257 309 38.2 Plus
ac-PA 201 CG3796-PA 24..199 83..256 291 41.7 Plus
ase-PA 486 CG3258-PA 96..247 25..167 222 40.1 Plus