BDGP Sequence Production Resources |
Search the DGRC for RE59362
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 593 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18854-RA |
Protein status: | RE59362.pep: validated not full length |
Preliminary Size: | 1597 |
Sequenced Size: | 2422 |
Gene | Date | Evidence |
---|---|---|
CG13122 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18854 | 2005-01-26 | Blastp of sequenced clone |
CG18854 | 2008-04-29 | Release 5.5 accounting |
CG18854 | 2008-08-15 | Release 5.9 accounting |
CG18854 | 2008-12-18 | 5.12 accounting |
2422 bp (2422 high quality bases) assembled on 2005-01-26
GenBank Submission: BT021254
> RE59362.complete AGTATGCTCGGATTTTTCGCTTTGTCTCACCACGGGTTGTCATCCTCTAT TTTTGCATCGGCATCGGACTCCGAATCCCTTTCATCAACCTTCAGCTTGC AGGTGCAGTGCTGAGCATACCTAAGCCAAAAAGGTTGCAGCTAAACCGAA GACCGCTCCAAATGTAAAGGGCGGCCAAGATATGTGGTCGACCGACCGTA CCAAGAAAGCCAACTCTTTAACCAACCCAAAAATAGCAAGAGGAAGTGGA ATACGTTATTGATTATGTTGCCTCCAAGTAGGGCGGAATGTTCAATATAA GACGGGAAACTATGGATCAAATGATGATTCCCGGGATTCAAGCAAGAATT TGGCTTGCTATGCATTAATCAAAAAATAACTCAGCAGAAGGTCAAGGGCC TACGCGAATTGAATAAGATTCTTGAAGCCAGGAATGCCATCACTTCGACC CCCAATAATGGCAAAAAATCCTTGTAGTGGATTCGGATGATAATGCTAAT GACTCCGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCA GGATGAATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTG AGCTGCGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGT GCTCTCTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGG ACTTGGTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGAT GACCAATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAA CCTCTGCCTAATAGTTTTGTATGGACCAGGGTGAGCCAAGCTTTGGAGAT GGAGGGCAGGTCATCGCTATCTTCTGCCGTTTGACGAGCCCTAGCCTTGC GTCCACATTGGAATCACTATCATCATCATCCGAATCCTCTACAACGATTT TTTCCCCATTATTGGTGGTCAATATGTCGGCAATCCTGGCCTTGACGATC TTAGTCAATTCGCGCAGCTCCTTAACATCAACGTTCTTCTGAGTTACATT TCGATTAGTGCATCGCAAGCCAGATTCTTGCTTGGCTCTCAGGAATCATC CTTTGGCCCATAGTTTTCCATCTGATCTTGAACATTTCGCCCTCCTTGGT GGCTACATGATAAATCATTTTTCCACCTCCCTTTGCTTCTCTGAGTCGGT TGAAGCGTTGGCTTTCTTGGTGCCGGCGGTCGGTCGACCACGTACCTTGG CCATCTTCACATTTGGTGCGATTTACATAGCTGCAACGTTGCAATTATTC GAGTATGAGGAGTTTTTGGCTAAGCTACTCTTAAACTTTCTAACCGAGCT GAATCCCGATATTTCCAATATGGAACAAGGAGTTAATATAGGGTGGAGCT CAGCCCGGGCGATGCGGTGAATCCTCTTCTCTTATCTAACTTTCTATCTG TACAAATGGAGCTTGGGTGATCAGTCTTTTGGTGCAGATCCAGCTGCCGG TGCAATCGATCCGTGTCTATCCATTAGATTTTAAGGCAGCTGCGATGGGA GCCACAGCGGGCGTAGACCTCCTCGAAGGAGCGGATGAGCTCGTCCATTC CGCGTAGCAGACCCTCCTCTCGGTTTCCAGGCGCCCAAGCACTTCGATGG TCCACCCTCACATGGGGTGGCAGCTCCCGGCACTTGGCGAAGTCAATTAG CCAAACGCCAACGCGATCGTCATCGTAGACGATAAAGATGCTGGAGCCAA TGATCTCGTGGCTGGCGAAGAAGGTCGACTGTTCGATGACCAGGCGCATG TGCTTTAGTCGCTTCAGCAGCTCCTTTTGCACGGATCGCCGAGCAGCCAG AAACTGTTCGATCGTCTGGGCAATCTGCTCGCTGCTTCGGCACGTCTTCA AATCCTTGACAGGCGGTCGTCCGCGCAGACGCAGTGCTTCGATCCGGAAA CCCTTGGAGTGGGAGGAGGACAGGGACTCCCGGAATGTCATGTACCGCAG CTTGGTGATCGCTCGTGCCTCGTGCTCCGCAGGCGTGGGAGCTCCCGCAT CCACGGCGATCATCTTCTGGTAGAGGTCCGGTCTGAGCGTGGCATTGCTG ACCTCCGATTCGAGAAAGGTGCGGCTGCCCATCTTGATGTCCATCACACA CGGATCCCGAAAGCCAGCCAGCAGATCCTGCAGCTCAATAAAGTGCTGTG ATTGCATCTCCTGTATTCCAAAGTAGGCGGGCACTATCTGAGCGGTCTGT GGTTCCTTGCAGATCAGTCGGTAGGCATGTACTTCGCTATCCTCCAGTCC TGAGATCCGTTTGCGCACTATTCCAGTCGATGTGGGAACAATGCTGCAAA ATAAGAATAATAGTAGCAGTTAGTAAATTGACTAATAAAATGTTTGTTTT CAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18854-RC | 2520 | CG18854-RC | 608..2514 | 504..2410 | 9535 | 100 | Plus |
CG18854.b | 2578 | CG18854.b | 713..2572 | 551..2410 | 9300 | 100 | Plus |
CG18854.a | 2579 | CG18854.a | 714..2573 | 551..2410 | 9300 | 100 | Plus |
CG18854.b | 2578 | CG18854.b | 7..516 | 1..510 | 2520 | 99.6 | Plus |
CG18854.a | 2579 | CG18854.a | 1..510 | 1..510 | 2520 | 99.6 | Plus |
CG18854-RC | 2520 | CG18854-RC | 7..516 | 1..510 | 2520 | 99.6 | Plus |
CG18854.b | 2578 | CG18854.b | 1196..1327 | 389..258 | 300 | 81.8 | Minus |
CG18854.b | 2578 | CG18854.b | 264..395 | 1165..1034 | 300 | 81.8 | Minus |
CG18854.a | 2579 | CG18854.a | 1197..1328 | 389..258 | 300 | 81.8 | Minus |
CG18854.a | 2579 | CG18854.a | 258..389 | 1165..1034 | 300 | 81.8 | Minus |
CG18854-RC | 2520 | CG18854-RC | 1138..1269 | 389..258 | 300 | 81.8 | Minus |
CG18854-RC | 2520 | CG18854-RC | 264..395 | 1165..1034 | 300 | 81.8 | Minus |
CG18854.b | 2578 | CG18854.b | 608..655 | 504..551 | 240 | 100 | Plus |
CG18854.a | 2579 | CG18854.a | 602..649 | 504..551 | 240 | 100 | Plus |
CG18854.b | 2578 | CG18854.b | 409..521 | 1014..901 | 215 | 80.7 | Minus |
CG18854.a | 2579 | CG18854.a | 403..515 | 1014..901 | 215 | 80.7 | Minus |
CG18854-RC | 2520 | CG18854-RC | 409..521 | 1014..901 | 215 | 80.7 | Minus |
CG18854.b | 2578 | CG18854.b | 592..639 | 84..37 | 165 | 89.5 | Minus |
CG18854.a | 2579 | CG18854.a | 586..633 | 84..37 | 165 | 89.5 | Minus |
CG18854-RC | 2520 | CG18854-RC | 592..639 | 84..37 | 165 | 89.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9786130..9787213 | 2406..1323 | 5420 | 100 | Minus |
chr2L | 23010047 | chr2L | 9787624..9788147 | 1324..801 | 2620 | 100 | Minus |
chr2L | 23010047 | chr2L | 9788770..9789149 | 510..131 | 1855 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 9788207..9788457 | 800..550 | 1255 | 100 | Minus |
chr2L | 23010047 | chr2L | 9790369..9790536 | 633..800 | 705 | 94.6 | Plus |
chr2L | 23010047 | chr2L | 9789454..9789583 | 130..1 | 635 | 99.2 | Minus |
chrX | 22417052 | chrX | 17524057..17524267 | 1049..1257 | 505 | 84.8 | Plus |
chr2L | 23010047 | chr2L | 9788765..9789108 | 901..1253 | 460 | 78.6 | Plus |
chr2L | 23010047 | chr2L | 9787696..9788042 | 173..510 | 400 | 77.7 | Plus |
chr2L | 23010047 | chr2L | 9789808..9789890 | 549..631 | 295 | 90.4 | Plus |
chr2L | 23010047 | chr2L | 9788630..9788678 | 552..504 | 245 | 100 | Minus |
chrX | 22417052 | chrX | 17524928..17525012 | 510..427 | 210 | 85.9 | Minus |
chrX | 22417052 | chrX | 17524923..17524986 | 901..964 | 185 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9787285..9788372 | 2410..1323 | 5440 | 100 | Minus |
2L | 23513712 | 2L | 9788783..9789306 | 1324..801 | 2620 | 100 | Minus |
2L | 23513712 | 2L | 9789930..9790309 | 510..131 | 1885 | 99.7 | Minus |
2L | 23513712 | 2L | 9789367..9789617 | 800..550 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 633..800 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9790616..9790745 | 130..1 | 635 | 99.2 | Minus |
X | 23542271 | X | 17634731..17634941 | 1049..1257 | 505 | 84.8 | Plus |
2L | 23513712 | 2L | 9789925..9790268 | 901..1253 | 430 | 78 | Plus |
2L | 23513712 | 2L | 9788855..9789201 | 173..510 | 400 | 77.7 | Plus |
2L | 23513712 | 2L | 9790966..9791048 | 549..631 | 295 | 90.4 | Plus |
2L | 23513712 | 2L | 9789790..9789838 | 552..504 | 245 | 100 | Minus |
X | 23542271 | X | 17635602..17635686 | 510..427 | 210 | 85.9 | Minus |
X | 23542271 | X | 17635597..17635660 | 901..964 | 185 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9787285..9788372 | 2410..1323 | 5440 | 100 | Minus |
2L | 23513712 | 2L | 9788783..9789306 | 1324..801 | 2620 | 100 | Minus |
2L | 23513712 | 2L | 9789930..9790309 | 510..131 | 1885 | 99.7 | Minus |
2L | 23513712 | 2L | 9789367..9789617 | 800..550 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 9791527..9791694 | 633..800 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9790616..9790745 | 130..1 | 635 | 99.2 | Minus |
X | 23527363 | X | 17642829..17643039 | 1049..1257 | 525 | 84.8 | Plus |
2L | 23513712 | 2L | 9788942..9789073 | 258..389 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 9790051..9790182 | 1034..1165 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 9790966..9791048 | 549..631 | 295 | 90.3 | Plus |
2L | 23513712 | 2L | 9789790..9789838 | 552..504 | 245 | 100 | Minus |
X | 23527363 | X | 17643700..17643784 | 510..427 | 220 | 85.8 | Minus |
2L | 23513712 | 2L | 9789925..9790037 | 901..1014 | 215 | 80.7 | Plus |
2L | 23513712 | 2L | 9789807..9789854 | 37..84 | 165 | 89.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9786130..9787211 | 1325..2406 | 100 | <- | Minus |
chr2L | 9787624..9788147 | 801..1324 | 100 | <- | Minus |
chr2L | 9788207..9788455 | 552..800 | 100 | <- | Minus |
chr2L | 9788631..9788672 | 510..551 | 100 | <- | Minus |
chr2L | 9788771..9789149 | 131..509 | 99 | <- | Minus |
chr2L | 9789454..9789583 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18854-RC | 30..363 | 501..834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4036-RC | 559..754 | 634..829 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4036-RA | 559..754 | 634..829 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18854-RC | 30..363 | 501..834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4036-RA | 559..754 | 634..829 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18854-RC | 1..509 | 1..509 | 99 | -> | Plus |
CG18854-RC | 608..2504 | 510..2406 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IP3K1-RA | 900..1928 | 1313..2345 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IP3K1-RA | 906..1934 | 1313..2345 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18854-RC | 1..509 | 1..509 | 99 | -> | Plus |
CG18854-RC | 608..2504 | 510..2406 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IP3K1-RA | 906..1934 | 1313..2345 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9787289..9788370 | 1325..2406 | 100 | <- | Minus |
2L | 9788783..9789306 | 801..1324 | 100 | <- | Minus |
2L | 9789367..9789615 | 552..800 | 100 | <- | Minus |
2L | 9789791..9789832 | 510..551 | 100 | <- | Minus |
2L | 9789931..9790309 | 131..509 | 99 | <- | Minus |
2L | 9790616..9790745 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9787289..9788370 | 1325..2406 | 100 | <- | Minus |
2L | 9788783..9789306 | 801..1324 | 100 | <- | Minus |
2L | 9789367..9789615 | 552..800 | 100 | <- | Minus |
2L | 9789791..9789832 | 510..551 | 100 | <- | Minus |
2L | 9789931..9790309 | 131..509 | 99 | <- | Minus |
2L | 9790616..9790745 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9787289..9788370 | 1325..2406 | 100 | <- | Minus |
2L | 9788783..9789306 | 801..1324 | 100 | <- | Minus |
2L | 9789367..9789615 | 552..800 | 100 | <- | Minus |
2L | 9789791..9789832 | 510..551 | 100 | <- | Minus |
2L | 9789931..9790309 | 131..509 | 99 | <- | Minus |
2L | 9790616..9790745 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9789931..9790309 | 131..509 | 99 | <- | Minus |
arm_2L | 9790616..9790745 | 1..130 | 99 | Minus | |
arm_2L | 9787289..9788370 | 1325..2406 | 100 | <- | Minus |
arm_2L | 9788783..9789306 | 801..1324 | 100 | <- | Minus |
arm_2L | 9789367..9789615 | 552..800 | 100 | <- | Minus |
arm_2L | 9789791..9789832 | 510..551 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9790616..9790745 | 1..130 | 99 | Minus | |
2L | 9789931..9790309 | 131..509 | 99 | <- | Minus |
2L | 9787289..9788370 | 1325..2406 | 100 | <- | Minus |
2L | 9788783..9789306 | 801..1324 | 100 | <- | Minus |
2L | 9789367..9789615 | 552..800 | 100 | <- | Minus |
2L | 9789791..9789832 | 510..551 | 100 | <- | Minus |
Translation from 486 to 833
> RE59362.pep MIMLMTPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQVAKSC LGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFEEMVLR IPLPNLCLIVLYGPG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22814-PA | 304 | GF22814-PA | 183..252 | 46..115 | 181 | 62.9 | Plus |
Dana\GF22814-PA | 304 | GF22814-PA | 1..86 | 23..96 | 140 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10057-PA | 304 | GG10057-PA | 183..252 | 46..115 | 272 | 74.3 | Plus |
Dere\GG10057-PA | 304 | GG10057-PA | 1..86 | 23..96 | 139 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13824-PA | 307 | GH13824-PA | 183..253 | 46..115 | 211 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4036-PB | 304 | CG4036-PB | 183..251 | 46..114 | 289 | 82.6 | Plus |
CG4036-PA | 304 | CG4036-PA | 183..251 | 46..114 | 289 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20151-PA | 304 | GI20151-PA | 183..252 | 46..115 | 197 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18936-PA | 304 | GL18936-PA | 183..252 | 46..115 | 176 | 61.4 | Plus |
Dper\GL18936-PA | 304 | GL18936-PA | 1..39 | 23..61 | 138 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25863-PA | 304 | GA25863-PA | 183..252 | 46..115 | 176 | 61.4 | Plus |
Dpse\GA25863-PA | 304 | GA25863-PA | 1..39 | 23..61 | 138 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17708-PA | 389 | GM17708-PA | 268..337 | 46..115 | 294 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13536-PA | 306 | GJ13536-PA | 183..252 | 46..115 | 215 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24867-PA | 307 | GK24867-PA | 186..254 | 46..114 | 246 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18871-PA | 304 | GE18871-PA | 183..252 | 46..115 | 268 | 72.9 | Plus |
Translation from 486 to 833
> RE59362.hyp MIMLMTPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQVAKSC LGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFEEMVLR IPLPNLCLIVLYGPG*