Clone RE59362 Report

Search the DGRC for RE59362

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:593
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG18854-RA
Protein status:RE59362.pep: validated not full length
Preliminary Size:1597
Sequenced Size:2422

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13122 2002-01-01 Sim4 clustering to Release 2
CG18854 2005-01-26 Blastp of sequenced clone
CG18854 2008-04-29 Release 5.5 accounting
CG18854 2008-08-15 Release 5.9 accounting
CG18854 2008-12-18 5.12 accounting

Clone Sequence Records

RE59362.complete Sequence

2422 bp (2422 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021254

> RE59362.complete
AGTATGCTCGGATTTTTCGCTTTGTCTCACCACGGGTTGTCATCCTCTAT
TTTTGCATCGGCATCGGACTCCGAATCCCTTTCATCAACCTTCAGCTTGC
AGGTGCAGTGCTGAGCATACCTAAGCCAAAAAGGTTGCAGCTAAACCGAA
GACCGCTCCAAATGTAAAGGGCGGCCAAGATATGTGGTCGACCGACCGTA
CCAAGAAAGCCAACTCTTTAACCAACCCAAAAATAGCAAGAGGAAGTGGA
ATACGTTATTGATTATGTTGCCTCCAAGTAGGGCGGAATGTTCAATATAA
GACGGGAAACTATGGATCAAATGATGATTCCCGGGATTCAAGCAAGAATT
TGGCTTGCTATGCATTAATCAAAAAATAACTCAGCAGAAGGTCAAGGGCC
TACGCGAATTGAATAAGATTCTTGAAGCCAGGAATGCCATCACTTCGACC
CCCAATAATGGCAAAAAATCCTTGTAGTGGATTCGGATGATAATGCTAAT
GACTCCGATGACGATGCAGAAATGGAGAATGACAAATCAGTACAACCCCA
GGATGAATACAATTCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTG
AGCTGCGAACAGGACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGT
GCTCTCTTTGATGCCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGG
ACTTGGTGGCCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGAT
GACCAATTTGCAACTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAA
CCTCTGCCTAATAGTTTTGTATGGACCAGGGTGAGCCAAGCTTTGGAGAT
GGAGGGCAGGTCATCGCTATCTTCTGCCGTTTGACGAGCCCTAGCCTTGC
GTCCACATTGGAATCACTATCATCATCATCCGAATCCTCTACAACGATTT
TTTCCCCATTATTGGTGGTCAATATGTCGGCAATCCTGGCCTTGACGATC
TTAGTCAATTCGCGCAGCTCCTTAACATCAACGTTCTTCTGAGTTACATT
TCGATTAGTGCATCGCAAGCCAGATTCTTGCTTGGCTCTCAGGAATCATC
CTTTGGCCCATAGTTTTCCATCTGATCTTGAACATTTCGCCCTCCTTGGT
GGCTACATGATAAATCATTTTTCCACCTCCCTTTGCTTCTCTGAGTCGGT
TGAAGCGTTGGCTTTCTTGGTGCCGGCGGTCGGTCGACCACGTACCTTGG
CCATCTTCACATTTGGTGCGATTTACATAGCTGCAACGTTGCAATTATTC
GAGTATGAGGAGTTTTTGGCTAAGCTACTCTTAAACTTTCTAACCGAGCT
GAATCCCGATATTTCCAATATGGAACAAGGAGTTAATATAGGGTGGAGCT
CAGCCCGGGCGATGCGGTGAATCCTCTTCTCTTATCTAACTTTCTATCTG
TACAAATGGAGCTTGGGTGATCAGTCTTTTGGTGCAGATCCAGCTGCCGG
TGCAATCGATCCGTGTCTATCCATTAGATTTTAAGGCAGCTGCGATGGGA
GCCACAGCGGGCGTAGACCTCCTCGAAGGAGCGGATGAGCTCGTCCATTC
CGCGTAGCAGACCCTCCTCTCGGTTTCCAGGCGCCCAAGCACTTCGATGG
TCCACCCTCACATGGGGTGGCAGCTCCCGGCACTTGGCGAAGTCAATTAG
CCAAACGCCAACGCGATCGTCATCGTAGACGATAAAGATGCTGGAGCCAA
TGATCTCGTGGCTGGCGAAGAAGGTCGACTGTTCGATGACCAGGCGCATG
TGCTTTAGTCGCTTCAGCAGCTCCTTTTGCACGGATCGCCGAGCAGCCAG
AAACTGTTCGATCGTCTGGGCAATCTGCTCGCTGCTTCGGCACGTCTTCA
AATCCTTGACAGGCGGTCGTCCGCGCAGACGCAGTGCTTCGATCCGGAAA
CCCTTGGAGTGGGAGGAGGACAGGGACTCCCGGAATGTCATGTACCGCAG
CTTGGTGATCGCTCGTGCCTCGTGCTCCGCAGGCGTGGGAGCTCCCGCAT
CCACGGCGATCATCTTCTGGTAGAGGTCCGGTCTGAGCGTGGCATTGCTG
ACCTCCGATTCGAGAAAGGTGCGGCTGCCCATCTTGATGTCCATCACACA
CGGATCCCGAAAGCCAGCCAGCAGATCCTGCAGCTCAATAAAGTGCTGTG
ATTGCATCTCCTGTATTCCAAAGTAGGCGGGCACTATCTGAGCGGTCTGT
GGTTCCTTGCAGATCAGTCGGTAGGCATGTACTTCGCTATCCTCCAGTCC
TGAGATCCGTTTGCGCACTATTCCAGTCGATGTGGGAACAATGCTGCAAA
ATAAGAATAATAGTAGCAGTTAGTAAATTGACTAATAAAATGTTTGTTTT
CAAAACAAAAAAAAAAAAAAAA

RE59362.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18854-RC 2520 CG18854-RC 608..2514 504..2410 9535 100 Plus
CG18854.b 2578 CG18854.b 713..2572 551..2410 9300 100 Plus
CG18854.a 2579 CG18854.a 714..2573 551..2410 9300 100 Plus
CG18854.b 2578 CG18854.b 7..516 1..510 2520 99.6 Plus
CG18854.a 2579 CG18854.a 1..510 1..510 2520 99.6 Plus
CG18854-RC 2520 CG18854-RC 7..516 1..510 2520 99.6 Plus
CG18854.b 2578 CG18854.b 1196..1327 389..258 300 81.8 Minus
CG18854.b 2578 CG18854.b 264..395 1165..1034 300 81.8 Minus
CG18854.a 2579 CG18854.a 1197..1328 389..258 300 81.8 Minus
CG18854.a 2579 CG18854.a 258..389 1165..1034 300 81.8 Minus
CG18854-RC 2520 CG18854-RC 1138..1269 389..258 300 81.8 Minus
CG18854-RC 2520 CG18854-RC 264..395 1165..1034 300 81.8 Minus
CG18854.b 2578 CG18854.b 608..655 504..551 240 100 Plus
CG18854.a 2579 CG18854.a 602..649 504..551 240 100 Plus
CG18854.b 2578 CG18854.b 409..521 1014..901 215 80.7 Minus
CG18854.a 2579 CG18854.a 403..515 1014..901 215 80.7 Minus
CG18854-RC 2520 CG18854-RC 409..521 1014..901 215 80.7 Minus
CG18854.b 2578 CG18854.b 592..639 84..37 165 89.5 Minus
CG18854.a 2579 CG18854.a 586..633 84..37 165 89.5 Minus
CG18854-RC 2520 CG18854-RC 592..639 84..37 165 89.5 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9786130..9787213 2406..1323 5420 100 Minus
chr2L 23010047 chr2L 9787624..9788147 1324..801 2620 100 Minus
chr2L 23010047 chr2L 9788770..9789149 510..131 1855 99.2 Minus
chr2L 23010047 chr2L 9788207..9788457 800..550 1255 100 Minus
chr2L 23010047 chr2L 9790369..9790536 633..800 705 94.6 Plus
chr2L 23010047 chr2L 9789454..9789583 130..1 635 99.2 Minus
chrX 22417052 chrX 17524057..17524267 1049..1257 505 84.8 Plus
chr2L 23010047 chr2L 9788765..9789108 901..1253 460 78.6 Plus
chr2L 23010047 chr2L 9787696..9788042 173..510 400 77.7 Plus
chr2L 23010047 chr2L 9789808..9789890 549..631 295 90.4 Plus
chr2L 23010047 chr2L 9788630..9788678 552..504 245 100 Minus
chrX 22417052 chrX 17524928..17525012 510..427 210 85.9 Minus
chrX 22417052 chrX 17524923..17524986 901..964 185 85.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9787285..9788372 2410..1323 5440 100 Minus
2L 23513712 2L 9788783..9789306 1324..801 2620 100 Minus
2L 23513712 2L 9789930..9790309 510..131 1885 99.7 Minus
2L 23513712 2L 9789367..9789617 800..550 1255 100 Minus
2L 23513712 2L 9791527..9791694 633..800 705 94.6 Plus
2L 23513712 2L 9790616..9790745 130..1 635 99.2 Minus
X 23542271 X 17634731..17634941 1049..1257 505 84.8 Plus
2L 23513712 2L 9789925..9790268 901..1253 430 78 Plus
2L 23513712 2L 9788855..9789201 173..510 400 77.7 Plus
2L 23513712 2L 9790966..9791048 549..631 295 90.4 Plus
2L 23513712 2L 9789790..9789838 552..504 245 100 Minus
X 23542271 X 17635602..17635686 510..427 210 85.9 Minus
X 23542271 X 17635597..17635660 901..964 185 85.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9787285..9788372 2410..1323 5440 100 Minus
2L 23513712 2L 9788783..9789306 1324..801 2620 100 Minus
2L 23513712 2L 9789930..9790309 510..131 1885 99.7 Minus
2L 23513712 2L 9789367..9789617 800..550 1255 100 Minus
2L 23513712 2L 9791527..9791694 633..800 705 94.6 Plus
2L 23513712 2L 9790616..9790745 130..1 635 99.2 Minus
X 23527363 X 17642829..17643039 1049..1257 525 84.8 Plus
2L 23513712 2L 9788942..9789073 258..389 300 81.8 Plus
2L 23513712 2L 9790051..9790182 1034..1165 300 81.8 Plus
2L 23513712 2L 9790966..9791048 549..631 295 90.3 Plus
2L 23513712 2L 9789790..9789838 552..504 245 100 Minus
X 23527363 X 17643700..17643784 510..427 220 85.8 Minus
2L 23513712 2L 9789925..9790037 901..1014 215 80.7 Plus
2L 23513712 2L 9789807..9789854 37..84 165 89.5 Plus
Blast to na_te.dros performed on 2019-03-16 02:47:56 has no hits.

RE59362.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:48:55 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9786130..9787211 1325..2406 100 <- Minus
chr2L 9787624..9788147 801..1324 100 <- Minus
chr2L 9788207..9788455 552..800 100 <- Minus
chr2L 9788631..9788672 510..551 100 <- Minus
chr2L 9788771..9789149 131..509 99 <- Minus
chr2L 9789454..9789583 1..130 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:13 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 30..363 501..834 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:06 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RC 559..754 634..829 93   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:53 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 559..754 634..829 93   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:37 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 30..363 501..834 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:31 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 559..754 634..829 93   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:08:57 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 1..509 1..509 99 -> Plus
CG18854-RC 608..2504 510..2406 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:06 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
IP3K1-RA 900..1928 1313..2345 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:53 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
IP3K1-RA 906..1934 1313..2345 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:38 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
CG18854-RC 1..509 1..509 99 -> Plus
CG18854-RC 608..2504 510..2406 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:31 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
IP3K1-RA 906..1934 1313..2345 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:55 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9787289..9788370 1325..2406 100 <- Minus
2L 9788783..9789306 801..1324 100 <- Minus
2L 9789367..9789615 552..800 100 <- Minus
2L 9789791..9789832 510..551 100 <- Minus
2L 9789931..9790309 131..509 99 <- Minus
2L 9790616..9790745 1..130 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:55 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9787289..9788370 1325..2406 100 <- Minus
2L 9788783..9789306 801..1324 100 <- Minus
2L 9789367..9789615 552..800 100 <- Minus
2L 9789791..9789832 510..551 100 <- Minus
2L 9789931..9790309 131..509 99 <- Minus
2L 9790616..9790745 1..130 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:55 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9787289..9788370 1325..2406 100 <- Minus
2L 9788783..9789306 801..1324 100 <- Minus
2L 9789367..9789615 552..800 100 <- Minus
2L 9789791..9789832 510..551 100 <- Minus
2L 9789931..9790309 131..509 99 <- Minus
2L 9790616..9790745 1..130 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:53 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9789931..9790309 131..509 99 <- Minus
arm_2L 9790616..9790745 1..130 99   Minus
arm_2L 9787289..9788370 1325..2406 100 <- Minus
arm_2L 9788783..9789306 801..1324 100 <- Minus
arm_2L 9789367..9789615 552..800 100 <- Minus
arm_2L 9789791..9789832 510..551 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:03 Download gff for RE59362.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9790616..9790745 1..130 99   Minus
2L 9789931..9790309 131..509 99 <- Minus
2L 9787289..9788370 1325..2406 100 <- Minus
2L 9788783..9789306 801..1324 100 <- Minus
2L 9789367..9789615 552..800 100 <- Minus
2L 9789791..9789832 510..551 100 <- Minus

RE59362.pep Sequence

Translation from 486 to 833

> RE59362.pep
MIMLMTPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQVAKSC
LGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFEEMVLR
IPLPNLCLIVLYGPG*

RE59362.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22814-PA 304 GF22814-PA 183..252 46..115 181 62.9 Plus
Dana\GF22814-PA 304 GF22814-PA 1..86 23..96 140 40.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10057-PA 304 GG10057-PA 183..252 46..115 272 74.3 Plus
Dere\GG10057-PA 304 GG10057-PA 1..86 23..96 139 43 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13824-PA 307 GH13824-PA 183..253 46..115 211 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 183..251 46..114 289 82.6 Plus
CG4036-PA 304 CG4036-PA 183..251 46..114 289 82.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20151-PA 304 GI20151-PA 183..252 46..115 197 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18936-PA 304 GL18936-PA 183..252 46..115 176 61.4 Plus
Dper\GL18936-PA 304 GL18936-PA 1..39 23..61 138 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25863-PA 304 GA25863-PA 183..252 46..115 176 61.4 Plus
Dpse\GA25863-PA 304 GA25863-PA 1..39 23..61 138 64.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17708-PA 389 GM17708-PA 268..337 46..115 294 81.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13536-PA 306 GJ13536-PA 183..252 46..115 215 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24867-PA 307 GK24867-PA 186..254 46..114 246 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18871-PA 304 GE18871-PA 183..252 46..115 268 72.9 Plus

RE59362.hyp Sequence

Translation from 486 to 833

> RE59362.hyp
MIMLMTPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQVAKSC
LGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFEEMVLR
IPLPNLCLIVLYGPG*

RE59362.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 183..251 46..114 289 82.6 Plus
CG4036-PA 304 CG4036-PA 183..251 46..114 289 82.6 Plus