Clone RE59468 Report

Search the DGRC for RE59468

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:594
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG8177-RL
Protein status:RE59468.pep: gold
Preliminary Size:3907
Sequenced Size:1467

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8177 2002-11-22 Blastp of sequenced clone
CG8177 2003-01-01 Sim4 clustering to Release 3
CG8177 2008-04-29 Release 5.5 accounting
CG8177 2008-08-15 Release 5.9 accounting
CG8177 2008-12-18 5.12 accounting

Clone Sequence Records

RE59468.complete Sequence

1467 bp (1467 high quality bases) assembled on 2002-11-22

GenBank Submission: BT003194

> RE59468.complete
CATTTGCTGGGCAGCCTTCCCAGACAGCGGAGCTGGCCAATATTTGGCCT
CAAAAAATAGATATTTATATATATATATATATGTATATATACTCTCCTCA
TAACTCGCGGGTCAAAAGTGCAACAGACAAAAAGGATTTTGCGTGAGGGA
AAAACCCAATTACCAAACACTAGCAAACGTGATCGAAAGTTTTGCAAGCA
AAATAGGAGCCCTCAAGTCTGGCAATGAGGATCCCGACGAGGTGCTGCTG
GACTCGGAAATGGACAAGGTCTTTGCCGGCAACAGTGCGCGCAAGGACAA
GTTCGATGTAAACACCTTCCAGGACAACTCCCAGCTGCCCATTGGATCCC
GCAAGAAGAATAGCATCCGCACAAACGATCTGAACATCGAGGAGGACTCG
GAGTACGAGAGCCAAACGGAGCCATTGAATAATGCACAAAACTATGATGA
CATCCCCGAAGACTTCCCGCTAGTCTCGGAGAGAGCCGGACACGGCGATC
ACTCGGACAACTCGGTGGACGAGAAGCACGTCCAGTTTGGCGGCAAAAAG
AAGATCCCGCCCAGTTTGAGCTATGATGAACAGCCCACGGACCAATCGCA
CGAACGTAAACGCAGAAGAAGCCGCCATCAGTATTATAGACAACGTAAAT
TCTCACATCAGGACAGCGTGGAACCCAAAAACAAGCTCGAGGAAAACGGT
GATGCAGGTGCGCGTCGCATCTCTGTGCAGCCTGAGGACACGGCATTGGA
GGAGGCTGATCTTAACGAGCTGAGATCACATCGTTCGGACGACCCGCGTG
CCCTGCGCCGCCATAAGATCCATCACTCATCCATCAAGTTGCGCGAGTTG
CCCCAAATAACGATTTCCCCCTTCACCAACAAGAAGCCCGAGGTGGATCA
TAGTCCTCATGAGATCTTTGTGCAATTGGATGAGCTCACAGGCGTGGGCG
AGGATCGCGAATGGAAGGAGACGGCCCGTTGGATCAAGTATGAGGAGGAC
GTGGAGGAGGGCTCCGATCGTTGGGGCAAGCCCCATGTTGCCTCCCTCTC
CTTCCACTCGCTGCTCAATTTGCGTCGCTGCCTGGAAACGGGCGTTGTCC
TGCTCGATCTTAACGAGAAGGACCTGCCTGCCGTGGCCTATCGCGTGGTA
GAACAGATGGTGATCGAGGACCTGATTGACATCAATGACAAGCCATCGGT
GATGCGTTCGCTGCTCCTGCGCCATCGCCATGTCAACGAACACCAAGGTG
TGCTGCCCTTCACCAAGAGGAAGTACAACAGCTACACCAGCCTGCAGGTG
AGATCAACCCCTATGCCGATATTCAATCATCCAAATGGTTTCGCTAACAC
CCCCGACGCATTCTTGTCATTCTAATATCGTATTATCCAACCATTTTATC
TATTGACATCATGCCTGTACGCTATAAATAAATTGGCTTTCAGTGACAAA
AGAAAAAAAAAAAAAAA

RE59468.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-RL 1582 CG8177-RL 52..1500 1..1449 7245 100 Plus
CG8177.p 4944 CG8177.p 52..1348 1..1297 6485 100 Plus
CG8177-RE 5147 CG8177-RE 52..1348 1..1297 6485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9772824..9773119 1154..1449 1465 99.7 Plus
chr3L 24539361 chr3L 9771401..9771656 366..621 1280 100 Plus
chr3L 24539361 chr3L 9772513..9772757 912..1156 1225 100 Plus
chr3L 24539361 chr3L 9766012..9766228 1..217 1085 100 Plus
chr3L 24539361 chr3L 9772283..9772446 750..913 820 100 Plus
chr3L 24539361 chr3L 9771193..9771342 216..365 750 100 Plus
chr3L 24539361 chr3L 9771870..9772002 620..752 665 100 Plus
chr2L 23010047 chr2L 7233771..7233891 1078..958 185 76.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9781075..9781370 1154..1449 1480 100 Plus
3L 28110227 3L 9779652..9779907 366..621 1280 100 Plus
3L 28110227 3L 9780764..9781008 912..1156 1225 100 Plus
3L 28110227 3L 9774273..9774489 1..217 1085 100 Plus
3L 28110227 3L 9780534..9780697 750..913 820 100 Plus
3L 28110227 3L 9779444..9779593 216..365 750 100 Plus
3L 28110227 3L 9780121..9780253 620..752 665 100 Plus
2L 23513712 2L 7234759..7234879 1078..958 185 76.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9774175..9774470 1154..1449 1480 100 Plus
3L 28103327 3L 9772752..9773007 366..621 1280 100 Plus
3L 28103327 3L 9773864..9774108 912..1156 1225 100 Plus
3L 28103327 3L 9767373..9767589 1..217 1085 100 Plus
3L 28103327 3L 9773634..9773797 750..913 820 100 Plus
3L 28103327 3L 9772544..9772693 216..365 750 100 Plus
3L 28103327 3L 9773221..9773353 620..752 665 100 Plus
Blast to na_te.dros performed 2019-03-15 20:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3695..3757 1436..1374 116 68.8 Minus

RE59468.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:26:50 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9771872..9772001 622..751 100 -> Plus
chr3L 9772285..9772446 752..913 100 -> Plus
chr3L 9771195..9771342 218..365 100 -> Plus
chr3L 9771401..9771656 366..621 100 -> Plus
chr3L 9772515..9772757 914..1156 100 -> Plus
chr3L 9772827..9773122 1157..1452 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:16 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 76..1161 215..1304 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:13 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 1..1116 260..1375 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:12:31 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 1..1116 260..1375 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:30 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 76..1161 215..1304 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:14 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 1..1116 260..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:43 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RE 1..1297 1..1297 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:13 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 1..1447 1..1447 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:31 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 4..1450 1..1447 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:30 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RE 1..1297 1..1297 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:14 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 4..1450 1..1447 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:50 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9780123..9780252 622..751 100 -> Plus
3L 9780536..9780697 752..913 100 -> Plus
3L 9774273..9774489 1..217 100 -> Plus
3L 9779446..9779593 218..365 100 -> Plus
3L 9779652..9779907 366..621 100 -> Plus
3L 9780766..9781008 914..1156 100 -> Plus
3L 9781078..9781373 1157..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:50 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9780123..9780252 622..751 100 -> Plus
3L 9780536..9780697 752..913 100 -> Plus
3L 9774273..9774489 1..217 100 -> Plus
3L 9779446..9779593 218..365 100 -> Plus
3L 9779652..9779907 366..621 100 -> Plus
3L 9780766..9781008 914..1156 100 -> Plus
3L 9781078..9781373 1157..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:50 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9780123..9780252 622..751 100 -> Plus
3L 9780536..9780697 752..913 100 -> Plus
3L 9774273..9774489 1..217 100 -> Plus
3L 9779446..9779593 218..365 100 -> Plus
3L 9779652..9779907 366..621 100 -> Plus
3L 9780766..9781008 914..1156 100 -> Plus
3L 9781078..9781373 1157..1452 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:31 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9772546..9772693 218..365 100 -> Plus
arm_3L 9773636..9773797 752..913 100 -> Plus
arm_3L 9767373..9767589 1..217 100 -> Plus
arm_3L 9772752..9773007 366..621 100 -> Plus
arm_3L 9773223..9773352 622..751 100 -> Plus
arm_3L 9773866..9774108 914..1156 100 -> Plus
arm_3L 9774178..9774473 1157..1452 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:39 Download gff for RE59468.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9767373..9767589 1..217 100 -> Plus
3L 9772546..9772693 218..365 100 -> Plus
3L 9772752..9773007 366..621 100 -> Plus
3L 9773223..9773352 622..751 100 -> Plus
3L 9773636..9773797 752..913 100 -> Plus
3L 9773866..9774108 914..1156 100 -> Plus
3L 9774178..9774473 1157..1452 99   Plus

RE59468.pep Sequence

Translation from 259 to 1374

> RE59468.pep
MDKVFAGNSARKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYE
SQTEPLNNAQNYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIP
PSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAG
ARRISVQPEDTALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQI
TISPFTNKKPEVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEE
GSDRWGKPHVASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQM
VIEDLIDINDKPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQVRST
PMPIFNHPNGFANTPDAFLSF*

RE59468.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24675-PA 1292 GF24675-PA 61..409 1..346 1779 95.7 Plus
Dana\GF14032-PA 1092 GF14032-PA 129..243 214..328 281 49.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15410-PA 1270 GG15410-PA 41..387 1..346 1807 98 Plus
Dere\GG23542-PA 1190 GG23542-PA 136..250 214..328 279 48.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15430-PA 1270 GH15430-PA 41..391 1..347 1703 92 Plus
Dgri\GH13153-PA 1159 GH13153-PA 117..231 214..328 293 49.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-PL 371 CG8177-PL 1..371 1..371 1960 100 Plus
CG8177-PH 1201 CG8177-PH 41..386 1..346 1822 100 Plus
CG8177-PE 1228 CG8177-PE 1..346 1..346 1822 100 Plus
CG8177-PD 1161 CG8177-PD 1..346 1..346 1822 100 Plus
CG8177-PA 1268 CG8177-PA 41..386 1..346 1822 100 Plus
CG8177-PB 1201 CG8177-PB 41..386 1..346 1822 100 Plus
CG8177-PG 1268 CG8177-PG 41..386 1..346 1822 100 Plus
CG8177-PF 1201 CG8177-PF 41..386 1..346 1822 100 Plus
CG8177-PC 1201 CG8177-PC 41..386 1..346 1822 100 Plus
CG8177-PI 1201 CG8177-PI 41..386 1..346 1822 100 Plus
CG8177-PM 1210 CG8177-PM 41..395 1..346 1802 97.5 Plus
CG8177-PK 1233 CG8177-PK 11..351 8..346 1715 97.1 Plus
CG8177-PJ 1166 CG8177-PJ 11..351 8..346 1715 97.1 Plus
Ndae1-PF 1027 CG42253-PF 81..195 214..328 284 48.7 Plus
Ndae1-PA 1030 CG4675-PA 65..179 214..328 284 48.7 Plus
Ndae1-PJ 1046 CG42253-PJ 65..179 214..328 284 48.7 Plus
Ndae1-PH 1053 CG42253-PH 65..179 214..328 284 48.7 Plus
Ndae1-PG 1067 CG42253-PG 65..179 214..328 284 48.7 Plus
Ndae1-PE 1086 CG42253-PE 121..235 214..328 284 48.7 Plus
Ndae1-PB 1099 CG4675-PB 134..248 214..328 284 48.7 Plus
Ndae1-PI 1126 CG42253-PI 134..248 214..328 284 48.7 Plus
Ndae1-PD 1134 CG42253-PD 121..235 214..328 284 48.7 Plus
Ndae1-PC 1190 CG31906-PA 134..248 214..328 284 48.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13032-PA 1251 GI13032-PA 41..390 1..347 1713 92.9 Plus
Dmoj\GI17795-PA 1103 GI17795-PA 106..221 213..328 288 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16293-PA 331 GL16293-PA 42..330 1..308 1264 80.6 Plus
Dper\GL19233-PA 1197 GL19233-PA 137..251 214..328 286 49.6 Plus
Dper\GL16294-PA 812 GL16294-PA 1..32 315..346 174 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20870-PA 1273 GA20870-PA 42..393 1..346 1775 94.9 Plus
Dpse\GA18347-PA 1098 GA18347-PA 137..251 214..328 283 49.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25184-PA 1271 GM25184-PA 41..389 1..346 1833 98.6 Plus
Dsec\GM13591-PA 1188 GM13591-PA 134..248 214..328 279 48.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22503-PA 1136 GD22503-PA 134..248 214..328 293 48.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12127-PA 1263 GJ12127-PA 41..390 1..347 1740 93.7 Plus
Dvir\GJ17618-PA 1076 GJ17618-PA 114..229 213..328 279 49.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10968-PA 1265 GK10968-PA 41..391 1..347 1753 93.7 Plus
Dwil\GK24730-PA 1102 GK24730-PA 136..250 214..328 282 49.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21718-PA 1272 GE21718-PA 41..389 1..346 1826 98.6 Plus
Dyak\GE18368-PA 1237 GE18368-PA 138..252 214..328 281 48.7 Plus

RE59468.hyp Sequence

Translation from 259 to 1374

> RE59468.hyp
MDKVFAGNSARKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYE
SQTEPLNNAQNYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIP
PSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAG
ARRISVQPEDTALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQI
TISPFTNKKPEVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEE
GSDRWGKPHVASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQM
VIEDLIDINDKPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQVRST
PMPIFNHPNGFANTPDAFLSF*

RE59468.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-PL 371 CG8177-PL 1..371 1..371 1960 100 Plus
CG8177-PD 1161 CG8177-PD 1..346 1..346 1822 100 Plus
CG8177-PH 1201 CG8177-PH 41..386 1..346 1822 100 Plus
CG8177-PB 1201 CG8177-PB 41..386 1..346 1822 100 Plus
CG8177-PF 1201 CG8177-PF 41..386 1..346 1822 100 Plus