BDGP Sequence Production Resources |
Search the DGRC for RE59468
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 594 |
Well: | 68 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8177-RL |
Protein status: | RE59468.pep: gold |
Preliminary Size: | 3907 |
Sequenced Size: | 1467 |
Gene | Date | Evidence |
---|---|---|
CG8177 | 2002-11-22 | Blastp of sequenced clone |
CG8177 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8177 | 2008-04-29 | Release 5.5 accounting |
CG8177 | 2008-08-15 | Release 5.9 accounting |
CG8177 | 2008-12-18 | 5.12 accounting |
1467 bp (1467 high quality bases) assembled on 2002-11-22
GenBank Submission: BT003194
> RE59468.complete CATTTGCTGGGCAGCCTTCCCAGACAGCGGAGCTGGCCAATATTTGGCCT CAAAAAATAGATATTTATATATATATATATATGTATATATACTCTCCTCA TAACTCGCGGGTCAAAAGTGCAACAGACAAAAAGGATTTTGCGTGAGGGA AAAACCCAATTACCAAACACTAGCAAACGTGATCGAAAGTTTTGCAAGCA AAATAGGAGCCCTCAAGTCTGGCAATGAGGATCCCGACGAGGTGCTGCTG GACTCGGAAATGGACAAGGTCTTTGCCGGCAACAGTGCGCGCAAGGACAA GTTCGATGTAAACACCTTCCAGGACAACTCCCAGCTGCCCATTGGATCCC GCAAGAAGAATAGCATCCGCACAAACGATCTGAACATCGAGGAGGACTCG GAGTACGAGAGCCAAACGGAGCCATTGAATAATGCACAAAACTATGATGA CATCCCCGAAGACTTCCCGCTAGTCTCGGAGAGAGCCGGACACGGCGATC ACTCGGACAACTCGGTGGACGAGAAGCACGTCCAGTTTGGCGGCAAAAAG AAGATCCCGCCCAGTTTGAGCTATGATGAACAGCCCACGGACCAATCGCA CGAACGTAAACGCAGAAGAAGCCGCCATCAGTATTATAGACAACGTAAAT TCTCACATCAGGACAGCGTGGAACCCAAAAACAAGCTCGAGGAAAACGGT GATGCAGGTGCGCGTCGCATCTCTGTGCAGCCTGAGGACACGGCATTGGA GGAGGCTGATCTTAACGAGCTGAGATCACATCGTTCGGACGACCCGCGTG CCCTGCGCCGCCATAAGATCCATCACTCATCCATCAAGTTGCGCGAGTTG CCCCAAATAACGATTTCCCCCTTCACCAACAAGAAGCCCGAGGTGGATCA TAGTCCTCATGAGATCTTTGTGCAATTGGATGAGCTCACAGGCGTGGGCG AGGATCGCGAATGGAAGGAGACGGCCCGTTGGATCAAGTATGAGGAGGAC GTGGAGGAGGGCTCCGATCGTTGGGGCAAGCCCCATGTTGCCTCCCTCTC CTTCCACTCGCTGCTCAATTTGCGTCGCTGCCTGGAAACGGGCGTTGTCC TGCTCGATCTTAACGAGAAGGACCTGCCTGCCGTGGCCTATCGCGTGGTA GAACAGATGGTGATCGAGGACCTGATTGACATCAATGACAAGCCATCGGT GATGCGTTCGCTGCTCCTGCGCCATCGCCATGTCAACGAACACCAAGGTG TGCTGCCCTTCACCAAGAGGAAGTACAACAGCTACACCAGCCTGCAGGTG AGATCAACCCCTATGCCGATATTCAATCATCCAAATGGTTTCGCTAACAC CCCCGACGCATTCTTGTCATTCTAATATCGTATTATCCAACCATTTTATC TATTGACATCATGCCTGTACGCTATAAATAAATTGGCTTTCAGTGACAAA AGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9772824..9773119 | 1154..1449 | 1465 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 9771401..9771656 | 366..621 | 1280 | 100 | Plus |
chr3L | 24539361 | chr3L | 9772513..9772757 | 912..1156 | 1225 | 100 | Plus |
chr3L | 24539361 | chr3L | 9766012..9766228 | 1..217 | 1085 | 100 | Plus |
chr3L | 24539361 | chr3L | 9772283..9772446 | 750..913 | 820 | 100 | Plus |
chr3L | 24539361 | chr3L | 9771193..9771342 | 216..365 | 750 | 100 | Plus |
chr3L | 24539361 | chr3L | 9771870..9772002 | 620..752 | 665 | 100 | Plus |
chr2L | 23010047 | chr2L | 7233771..7233891 | 1078..958 | 185 | 76.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9781075..9781370 | 1154..1449 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 9779652..9779907 | 366..621 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 9780764..9781008 | 912..1156 | 1225 | 100 | Plus |
3L | 28110227 | 3L | 9774273..9774489 | 1..217 | 1085 | 100 | Plus |
3L | 28110227 | 3L | 9780534..9780697 | 750..913 | 820 | 100 | Plus |
3L | 28110227 | 3L | 9779444..9779593 | 216..365 | 750 | 100 | Plus |
3L | 28110227 | 3L | 9780121..9780253 | 620..752 | 665 | 100 | Plus |
2L | 23513712 | 2L | 7234759..7234879 | 1078..958 | 185 | 76.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9774175..9774470 | 1154..1449 | 1480 | 100 | Plus |
3L | 28103327 | 3L | 9772752..9773007 | 366..621 | 1280 | 100 | Plus |
3L | 28103327 | 3L | 9773864..9774108 | 912..1156 | 1225 | 100 | Plus |
3L | 28103327 | 3L | 9767373..9767589 | 1..217 | 1085 | 100 | Plus |
3L | 28103327 | 3L | 9773634..9773797 | 750..913 | 820 | 100 | Plus |
3L | 28103327 | 3L | 9772544..9772693 | 216..365 | 750 | 100 | Plus |
3L | 28103327 | 3L | 9773221..9773353 | 620..752 | 665 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3695..3757 | 1436..1374 | 116 | 68.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9771872..9772001 | 622..751 | 100 | -> | Plus |
chr3L | 9772285..9772446 | 752..913 | 100 | -> | Plus |
chr3L | 9771195..9771342 | 218..365 | 100 | -> | Plus |
chr3L | 9771401..9771656 | 366..621 | 100 | -> | Plus |
chr3L | 9772515..9772757 | 914..1156 | 100 | -> | Plus |
chr3L | 9772827..9773122 | 1157..1452 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RF | 76..1161 | 215..1304 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 1..1116 | 260..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 1..1116 | 260..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RF | 76..1161 | 215..1304 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 1..1116 | 260..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RE | 1..1297 | 1..1297 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 1..1447 | 1..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 4..1450 | 1..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RE | 1..1297 | 1..1297 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8177-RL | 4..1450 | 1..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9780123..9780252 | 622..751 | 100 | -> | Plus |
3L | 9780536..9780697 | 752..913 | 100 | -> | Plus |
3L | 9774273..9774489 | 1..217 | 100 | -> | Plus |
3L | 9779446..9779593 | 218..365 | 100 | -> | Plus |
3L | 9779652..9779907 | 366..621 | 100 | -> | Plus |
3L | 9780766..9781008 | 914..1156 | 100 | -> | Plus |
3L | 9781078..9781373 | 1157..1452 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9780123..9780252 | 622..751 | 100 | -> | Plus |
3L | 9780536..9780697 | 752..913 | 100 | -> | Plus |
3L | 9774273..9774489 | 1..217 | 100 | -> | Plus |
3L | 9779446..9779593 | 218..365 | 100 | -> | Plus |
3L | 9779652..9779907 | 366..621 | 100 | -> | Plus |
3L | 9780766..9781008 | 914..1156 | 100 | -> | Plus |
3L | 9781078..9781373 | 1157..1452 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9780123..9780252 | 622..751 | 100 | -> | Plus |
3L | 9780536..9780697 | 752..913 | 100 | -> | Plus |
3L | 9774273..9774489 | 1..217 | 100 | -> | Plus |
3L | 9779446..9779593 | 218..365 | 100 | -> | Plus |
3L | 9779652..9779907 | 366..621 | 100 | -> | Plus |
3L | 9780766..9781008 | 914..1156 | 100 | -> | Plus |
3L | 9781078..9781373 | 1157..1452 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9772546..9772693 | 218..365 | 100 | -> | Plus |
arm_3L | 9773636..9773797 | 752..913 | 100 | -> | Plus |
arm_3L | 9767373..9767589 | 1..217 | 100 | -> | Plus |
arm_3L | 9772752..9773007 | 366..621 | 100 | -> | Plus |
arm_3L | 9773223..9773352 | 622..751 | 100 | -> | Plus |
arm_3L | 9773866..9774108 | 914..1156 | 100 | -> | Plus |
arm_3L | 9774178..9774473 | 1157..1452 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9767373..9767589 | 1..217 | 100 | -> | Plus |
3L | 9772546..9772693 | 218..365 | 100 | -> | Plus |
3L | 9772752..9773007 | 366..621 | 100 | -> | Plus |
3L | 9773223..9773352 | 622..751 | 100 | -> | Plus |
3L | 9773636..9773797 | 752..913 | 100 | -> | Plus |
3L | 9773866..9774108 | 914..1156 | 100 | -> | Plus |
3L | 9774178..9774473 | 1157..1452 | 99 | Plus |
Translation from 259 to 1374
> RE59468.pep MDKVFAGNSARKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYE SQTEPLNNAQNYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIP PSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAG ARRISVQPEDTALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQI TISPFTNKKPEVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEE GSDRWGKPHVASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQM VIEDLIDINDKPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQVRST PMPIFNHPNGFANTPDAFLSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24675-PA | 1292 | GF24675-PA | 61..409 | 1..346 | 1779 | 95.7 | Plus |
Dana\GF14032-PA | 1092 | GF14032-PA | 129..243 | 214..328 | 281 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15410-PA | 1270 | GG15410-PA | 41..387 | 1..346 | 1807 | 98 | Plus |
Dere\GG23542-PA | 1190 | GG23542-PA | 136..250 | 214..328 | 279 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15430-PA | 1270 | GH15430-PA | 41..391 | 1..347 | 1703 | 92 | Plus |
Dgri\GH13153-PA | 1159 | GH13153-PA | 117..231 | 214..328 | 293 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8177-PL | 371 | CG8177-PL | 1..371 | 1..371 | 1960 | 100 | Plus |
CG8177-PH | 1201 | CG8177-PH | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PE | 1228 | CG8177-PE | 1..346 | 1..346 | 1822 | 100 | Plus |
CG8177-PD | 1161 | CG8177-PD | 1..346 | 1..346 | 1822 | 100 | Plus |
CG8177-PA | 1268 | CG8177-PA | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PB | 1201 | CG8177-PB | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PG | 1268 | CG8177-PG | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PF | 1201 | CG8177-PF | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PC | 1201 | CG8177-PC | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PI | 1201 | CG8177-PI | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PM | 1210 | CG8177-PM | 41..395 | 1..346 | 1802 | 97.5 | Plus |
CG8177-PK | 1233 | CG8177-PK | 11..351 | 8..346 | 1715 | 97.1 | Plus |
CG8177-PJ | 1166 | CG8177-PJ | 11..351 | 8..346 | 1715 | 97.1 | Plus |
Ndae1-PF | 1027 | CG42253-PF | 81..195 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PA | 1030 | CG4675-PA | 65..179 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PJ | 1046 | CG42253-PJ | 65..179 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PH | 1053 | CG42253-PH | 65..179 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PG | 1067 | CG42253-PG | 65..179 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PE | 1086 | CG42253-PE | 121..235 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PB | 1099 | CG4675-PB | 134..248 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PI | 1126 | CG42253-PI | 134..248 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PD | 1134 | CG42253-PD | 121..235 | 214..328 | 284 | 48.7 | Plus |
Ndae1-PC | 1190 | CG31906-PA | 134..248 | 214..328 | 284 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13032-PA | 1251 | GI13032-PA | 41..390 | 1..347 | 1713 | 92.9 | Plus |
Dmoj\GI17795-PA | 1103 | GI17795-PA | 106..221 | 213..328 | 288 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16293-PA | 331 | GL16293-PA | 42..330 | 1..308 | 1264 | 80.6 | Plus |
Dper\GL19233-PA | 1197 | GL19233-PA | 137..251 | 214..328 | 286 | 49.6 | Plus |
Dper\GL16294-PA | 812 | GL16294-PA | 1..32 | 315..346 | 174 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20870-PA | 1273 | GA20870-PA | 42..393 | 1..346 | 1775 | 94.9 | Plus |
Dpse\GA18347-PA | 1098 | GA18347-PA | 137..251 | 214..328 | 283 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25184-PA | 1271 | GM25184-PA | 41..389 | 1..346 | 1833 | 98.6 | Plus |
Dsec\GM13591-PA | 1188 | GM13591-PA | 134..248 | 214..328 | 279 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22503-PA | 1136 | GD22503-PA | 134..248 | 214..328 | 293 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12127-PA | 1263 | GJ12127-PA | 41..390 | 1..347 | 1740 | 93.7 | Plus |
Dvir\GJ17618-PA | 1076 | GJ17618-PA | 114..229 | 213..328 | 279 | 49.1 | Plus |
Translation from 259 to 1374
> RE59468.hyp MDKVFAGNSARKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYE SQTEPLNNAQNYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIP PSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAG ARRISVQPEDTALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQI TISPFTNKKPEVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEE GSDRWGKPHVASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQM VIEDLIDINDKPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQVRST PMPIFNHPNGFANTPDAFLSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8177-PL | 371 | CG8177-PL | 1..371 | 1..371 | 1960 | 100 | Plus |
CG8177-PD | 1161 | CG8177-PD | 1..346 | 1..346 | 1822 | 100 | Plus |
CG8177-PH | 1201 | CG8177-PH | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PB | 1201 | CG8177-PB | 41..386 | 1..346 | 1822 | 100 | Plus |
CG8177-PF | 1201 | CG8177-PF | 41..386 | 1..346 | 1822 | 100 | Plus |