BDGP Sequence Production Resources |
Search the DGRC for RE59473
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 594 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bves-RA |
Protein status: | RE59473.pep: gold |
Preliminary Size: | 1255 |
Sequenced Size: | 3923 |
Gene | Date | Evidence |
---|---|---|
CG1754 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32513 | 2002-04-21 | Blastp of sequenced clone |
CG32513 | 2003-01-01 | Sim4 clustering to Release 3 |
bves | 2008-04-29 | Release 5.5 accounting |
bves | 2008-08-15 | Release 5.9 accounting |
bves | 2008-12-18 | 5.12 accounting |
3923 bp (3923 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113513
> RE59473.complete GTTTCCCTTTTAACCACTTCTTTTGGCTGCTATTTGCGGTTTATTCGGCA GTTAATTCTCGATTTATGATTAGTTACTATTAGTGAGTCATCAAAAGCAC GGCTGGTATTCGAATCGGCAATTCATAACCGGCTGTTCCTGGGCTTATAT CCCAGCTGTTTTCGACTCTCCGTGGGAGCGAGCACGAGTAGTGAGCAGAG AGCGAAAAACACATTTCAACCACCACACAGTGGGGTACGATTATTATTTT TTAGAAAGTTACCAAAAGTTGTCTAAATACGTTTAGACCAAAGATGTCAA CTACGCCAAAGCAACCCAGCTGCCTAAGCGATGCAAAATGTGACAGGCGG CAGCAGCAGTAGCCTCATCAAAGGTTAGCTCACCAATAGCCCCAGCTAAA TATTAAACAAATACGGAAATAAGAGTCTAAGGCCATTAACTAAACGGCTG ACTAAGCTGTAAAATGCAAAGTAATTCAAATTTCAACTAGCTAGGATATG AACCGCAAGCAAAAAATACATTCAAGACACCAACCGCAAAGCACAAACAT TTTGAAAAGGGCAGCAGCAATAACAAAACAAACCACCACCAACAAAGGTT GAGGAAAACCGCGCGTAAGCAACAACAAACGAATTAGGCGAAGGAGAGAA AGGTGGAAGATAGAAACAAAAGGCAGATTTTTGGCATTCGCCTAGCGTGG ACAACAACCAACCAGTACATCAACCAATCAATTTGGTAATTAGGCAAAAT ACGTGCTGCAAAAAATAGCTCAACGATCAGGCTGAGAGGAGAGTGACAGA CTGAAACGAAGGCAGTTCGCCTGGATCAACGGAATGCCCAGCACGGCGGG CAGTGCAGCTGGCGTTGGTATGGGCGCCCTGATCAACAGTGCCGGCAGCA GCGCCAGTAGTGTCATGGGCATTGGCATGGGCAGAGCAGCTGCTACGGGA GCAGGAGCACCAGGCAGTTCGGGATCTGGAGCAGATGCCTCCGCCGCCGG CACTTTAATCGCCCAGAGCACGGCGGGAACGAGCGCCGCCAGCAGTGGAA CGATCACCTGGGACAACAATGGAACCCTGCGATCGATCAATCCCGGCGAT TGGTCCATCGAACAGTGCCTCGGGCCACATCACCTGTACTTTCAGCTCGG CTGGGCCTTTCTCTTCCTAGCCTTTTTGGCTCCACACGGTCCCTACGGCG CCCTGTGGATGCGTGCCATGCTGCTCATTGGCTGCCTGATGATGGGCATG CATGGCTACTTGGTGGCCTTTGCACCGGACGTCATCCTGTGGTCGGGCAT GGGACTTTTTGTCAACTTCATCTATCTCGTCGTGGTGCTATGCCGGCTGA GGCCTGTGCGATTCGAGCAGGAAATCGAAGCGGTCTACCTGGCACTTTTC CAGCCGCTGCACGTGACGCGCCACCAGTTCAAGAAGGTGCTCAACTGCAT GAAGGTGATACGTGCCCTGAAGTACCAGGAGGTCTACGCCCAGGAGAAGG TCACCAAGGTCGACAGCCTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTG TCGCAGCATCAGCGCGCCCTGCACATTGTGTTTCCCCATCAGTTCCTAGA CTCGCCAGAATGGTTTGGCGTCTCGACCGATGACTACTTTCAGGTCTCCA TCATGGCCATGGAGGAGTCGCGGGTGCTGATCTGGCATCGCGACAAGCTC AAATTGTCAATTATGGCCGAGCCCTTCTTGCAGACCGTCTTCGATCACAT TCTGGGCCGGGATGTGGTCAAGAAGCTGATGCAGGTCACCCAGGTGAGCG AGTCGATAGCCAGCAATGGCTTCCTGCCCTCTGGTGGATATGCTGAGGAT GCGGAGGACAAGCCCATGTTGATACTAAAGAAGAGTGTGGATGTGGGACA CGGACTGACGGCCCTGATCAACCGGCAGCTACAGGACGAGCATGTTCCTT TACTCGGTCGCACGTACAAACAACAACAACAACAACAACAACTACTGCTA CTGCAACAACAACTAGAACAACAACGCGTACAAGAAGCAACAACCAGCGC CAACAACATCGAGCAAAGTGCAATCTGAATTTATGCAACCGCCCGCTGCT GCTCAACTTGCCACGAACAGAAATCAGAGCACCCATCCGTCCCTTCACCT TTGACCTGCACAAGAACTACCAGAAAAACAACCCCACCCACACATGCAAA CAGCCATCAGCCATCAGTCATCAGTCAGTCAGTCATCAATCATGCGCAGC CACACCAACAGCAACATCGATCACGATCATCAGAAAAGAGCGAAAAGAGC TGTCGAAGATATCTGGAAGCTATCCATCTAAATCCGCATCCTAAGTTCCA TATATAATAATCTCATCTTTAGCATAGCAACTAGCACTAGCTAAACAAGC ATCTAACACATCTAATCGTTCTAATAGCAAACTTTGTATTGCCCCCACAA CTGCAAACAATTAGCCAGAGACTTGAGTTTTTGTGTAAAGTAATTGACTT TGGGAAACATAAACTTTTCGTCTCAGCGGAAAAGTGCTAAAACACCGTGT TACCATTTAGAAGAAACTTGGAGAAGTTACTAAAGAAGTTTACAGGCGTG AAAAAAAAAAATGATTCGCCATTTCCCCTGATAACCCTTTTTAGGAGGTT TATTCAAAAAACATAAGTAGTCTTTTATCAAACGTACACTGACTTAAATC TAGGAAACTGGGAGAACTGCCTAAAATGATTTGTAGTTTCACCTGACAAC TCTATTTAGCAGTGTAGAGAAAAACGTAACATCGTAGACCGTTATTAAAA AAAAAAACAAGAAAAAAAACTATTCAATTAAACCCGTAGTAATATACTTG TATTCCATGAAGATAAAGAAACCAATTATTTCACAAAGAAAACACAAATA CAAGTAGGAAACTTACTTACATTGCAACACTGTTGAATTCAATATGCTCC CTGAATCCTTCGCAAAAACTATCGTTAACTGCAGTCAAACCAGTTGTAAA AATTGTAATTTATTTTGACTTATCATGGTTGTATGTATGTTGAGTTGTAG TCAGACAAGACACTTGATTGCACATGAATTAGTTTCAGTTTGAGTGGGGT TTTCAATTGAACACGATCAGAAAGCCAACCAAGGTTTAAATTTGAAATTA ATTGATCGTGGTTTTGAGTTTGAATTGGAATTAGTAATATTTGATATATC ACGCAGTATACAAACATTTTATATTAGTGGAAGTTTTTGAGTCGATCTTC TACAATATAAACGATTATTACACTCGTGTAATAAAGGAAACCTTTGTAGA CGCAGACTATTTTCCAAGAACCTATTATAAGTATAATGACTAGCATTGGA ACTGGTTTGATTACAGCTCTTCAGCTTCAATTACCGATTCTAGATCTCAA GATCGATCAGTCTAGTGACAGGTGATAGGTAATTAATGAACTTTTCCGCT GGGCCAGGAGTTTTCAACGCTTTATTTGATTAAATTCTTATTTCTTACCG CTTGGCATTTACTGGAAATTTACTGTGCTGGCACATCAATCAAGTCTCTA AATCTTCCATTAACACATTATTATTTTATTTGTATTTCTATATGCATACG TATTTTGCGTTGATTCGTTGATTGATTTGCATACAAATTGAGCTTGAAGA AAGCGTGAAAACTAATTAGAATTAATATCGAATAATATTTGATAATGTTA AGCAATACATAGCCTAAGTTGTTGTACATACGCTATATATATATATTTGC TGTACATAATCCCGAGTGCCCTCAAATCCGAGAACCACACCCCCGTCCCC TAATCTCCACTAATACTCCCCCAAGAAAGTGTAATAAACGTAGTGGAATC AATGTGAATGTAAACAAGCCAAAAACCGAAAGCTAATAAAACAAAAAAAA AACACACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 20942121..20944094 | 1935..3907 | 9790 | 99.8 | Plus |
chrX | 22417052 | chrX | 20925649..20926716 | 317..1384 | 5340 | 100 | Plus |
chrX | 22417052 | chrX | 20919164..20919479 | 1..316 | 1580 | 100 | Plus |
chrX | 22417052 | chrX | 20940521..20940679 | 1382..1540 | 795 | 100 | Plus |
chrX | 22417052 | chrX | 20940927..20941081 | 1641..1795 | 775 | 100 | Plus |
chrX | 22417052 | chrX | 20941196..20941339 | 1792..1935 | 720 | 100 | Plus |
chrX | 22417052 | chrX | 20940749..20940853 | 1541..1645 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21076964..21078938 | 1935..3908 | 9795 | 99.8 | Plus |
X | 23542271 | X | 21060492..21061559 | 317..1384 | 5340 | 100 | Plus |
X | 23542271 | X | 21054007..21054322 | 1..316 | 1580 | 100 | Plus |
X | 23542271 | X | 21075364..21075522 | 1382..1540 | 795 | 100 | Plus |
X | 23542271 | X | 21075770..21075924 | 1641..1795 | 775 | 100 | Plus |
X | 23542271 | X | 21076039..21076182 | 1792..1935 | 720 | 100 | Plus |
X | 23542271 | X | 21075592..21075696 | 1541..1645 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21062056..21064030 | 1935..3908 | 9805 | 99.8 | Plus |
X | 23527363 | X | 21045584..21046651 | 317..1384 | 5340 | 100 | Plus |
X | 23527363 | X | 21039099..21039414 | 1..316 | 1580 | 100 | Plus |
X | 23527363 | X | 21060456..21060614 | 1382..1540 | 795 | 100 | Plus |
X | 23527363 | X | 21060862..21061016 | 1641..1795 | 775 | 100 | Plus |
X | 23527363 | X | 21061131..21061274 | 1792..1935 | 720 | 100 | Plus |
X | 23527363 | X | 21060684..21060788 | 1541..1645 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2482..2804 | 1969..2289 | 143 | 56.1 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 609..728 | 953..835 | 140 | 62.4 | Minus |
opus | 7521 | opus OPUS 7521bp | 6114..6245 | 3593..3461 | 122 | 55.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 20919164..20919479 | 1..316 | 100 | -> | Plus |
chrX | 20925649..20926714 | 317..1382 | 100 | -> | Plus |
chrX | 20940522..20940679 | 1383..1540 | 100 | -> | Plus |
chrX | 20940749..20940851 | 1541..1643 | 100 | -> | Plus |
chrX | 20940930..20941079 | 1644..1793 | 100 | -> | Plus |
chrX | 20941198..20941339 | 1794..1935 | 100 | -> | Plus |
chrX | 20942122..20942154 | 1936..1968 | 100 | == | Plus |
chrX | 20942212..20944071 | 2026..3884 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RB | 1..1245 | 834..2078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RB | 1..1245 | 834..2078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 1..1245 | 834..2078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RB | 1..1245 | 834..2078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 1..1245 | 834..2078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 1..3885 | 1..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 1..3885 | 1..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 45..3929 | 1..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 1..3885 | 1..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bves-RA | 45..3929 | 1..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21075365..21075522 | 1383..1540 | 100 | -> | Plus |
X | 21075592..21075694 | 1541..1643 | 100 | -> | Plus |
X | 21075773..21075922 | 1644..1793 | 100 | -> | Plus |
X | 21076041..21076182 | 1794..1935 | 100 | -> | Plus |
X | 21054007..21054322 | 1..316 | 100 | -> | Plus |
X | 21060492..21061557 | 317..1382 | 100 | -> | Plus |
X | 21076965..21078914 | 1936..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21075365..21075522 | 1383..1540 | 100 | -> | Plus |
X | 21075592..21075694 | 1541..1643 | 100 | -> | Plus |
X | 21075773..21075922 | 1644..1793 | 100 | -> | Plus |
X | 21076041..21076182 | 1794..1935 | 100 | -> | Plus |
X | 21054007..21054322 | 1..316 | 100 | -> | Plus |
X | 21060492..21061557 | 317..1382 | 100 | -> | Plus |
X | 21076965..21078914 | 1936..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21075365..21075522 | 1383..1540 | 100 | -> | Plus |
X | 21075592..21075694 | 1541..1643 | 100 | -> | Plus |
X | 21075773..21075922 | 1644..1793 | 100 | -> | Plus |
X | 21076041..21076182 | 1794..1935 | 100 | -> | Plus |
X | 21054007..21054322 | 1..316 | 100 | -> | Plus |
X | 21060492..21061557 | 317..1382 | 100 | -> | Plus |
X | 21076965..21078914 | 1936..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 20947068..20947209 | 1794..1935 | 100 | -> | Plus |
arm_X | 20946800..20946949 | 1644..1793 | 100 | -> | Plus |
arm_X | 20925034..20925349 | 1..316 | 100 | -> | Plus |
arm_X | 20931519..20932584 | 317..1382 | 100 | -> | Plus |
arm_X | 20946392..20946549 | 1383..1540 | 100 | -> | Plus |
arm_X | 20946619..20946721 | 1541..1643 | 100 | -> | Plus |
arm_X | 20947992..20949941 | 1936..3884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21039099..21039414 | 1..316 | 100 | -> | Plus |
X | 21045584..21046649 | 317..1382 | 100 | -> | Plus |
X | 21060457..21060614 | 1383..1540 | 100 | -> | Plus |
X | 21060684..21060786 | 1541..1643 | 100 | -> | Plus |
X | 21060865..21061014 | 1644..1793 | 100 | -> | Plus |
X | 21061133..21061274 | 1794..1935 | 100 | -> | Plus |
X | 21062057..21064006 | 1936..3884 | 99 | Plus |
Translation from 833 to 2077
> RE59473.pep MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ EATTSANNIEQSAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21712-PA | 424 | GF21712-PA | 1..382 | 1..379 | 1875 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19706-PA | 400 | GG19706-PA | 1..400 | 13..414 | 2031 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11835-PA | 433 | GH11835-PA | 1..394 | 1..387 | 1683 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bves-PB | 414 | CG32513-PB | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PA | 414 | CG32513-PA | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PD | 388 | CG32513-PD | 1..367 | 1..367 | 1889 | 100 | Plus |
bves-PC | 399 | CG32513-PC | 1..367 | 1..367 | 1889 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14313-PA | 424 | GI14313-PA | 1..388 | 1..384 | 1706 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16399-PA | 382 | GL16399-PA | 1..200 | 186..385 | 1046 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22366-PA | 426 | GA22366-PA | 1..426 | 1..414 | 1721 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23060-PA | 410 | GM23060-PA | 1..410 | 1..414 | 2106 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17511-PA | 278 | GD17511-PA | 48..278 | 181..414 | 1181 | 96.2 | Plus |
Dsim\GD24703-PA | 192 | GD24703-PA | 1..182 | 1..183 | 913 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19369-PA | 419 | GJ19369-PA | 1..385 | 1..388 | 1719 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25611-PA | 414 | GK25611-PA | 1..388 | 1..379 | 1591 | 79.1 | Plus |
Dwil\GK23556-PA | 68 | GK23556-PA | 1..58 | 294..351 | 226 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17905-PA | 412 | GE17905-PA | 1..412 | 1..414 | 2117 | 97.4 | Plus |
Translation from 833 to 2077
> RE59473.hyp MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ EATTSANNIEQSAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bves-PB | 414 | CG32513-PB | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PA | 414 | CG32513-PA | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PD | 388 | CG32513-PD | 1..367 | 1..367 | 1889 | 100 | Plus |
bves-PC | 399 | CG32513-PC | 1..367 | 1..367 | 1889 | 100 | Plus |