Clone RE59473 Report

Search the DGRC for RE59473

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:594
Well:73
Vector:pFlc-1
Associated Gene/Transcriptbves-RA
Protein status:RE59473.pep: gold
Preliminary Size:1255
Sequenced Size:3923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1754 2002-01-01 Sim4 clustering to Release 2
CG32513 2002-04-21 Blastp of sequenced clone
CG32513 2003-01-01 Sim4 clustering to Release 3
bves 2008-04-29 Release 5.5 accounting
bves 2008-08-15 Release 5.9 accounting
bves 2008-12-18 5.12 accounting

Clone Sequence Records

RE59473.complete Sequence

3923 bp (3923 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113513

> RE59473.complete
GTTTCCCTTTTAACCACTTCTTTTGGCTGCTATTTGCGGTTTATTCGGCA
GTTAATTCTCGATTTATGATTAGTTACTATTAGTGAGTCATCAAAAGCAC
GGCTGGTATTCGAATCGGCAATTCATAACCGGCTGTTCCTGGGCTTATAT
CCCAGCTGTTTTCGACTCTCCGTGGGAGCGAGCACGAGTAGTGAGCAGAG
AGCGAAAAACACATTTCAACCACCACACAGTGGGGTACGATTATTATTTT
TTAGAAAGTTACCAAAAGTTGTCTAAATACGTTTAGACCAAAGATGTCAA
CTACGCCAAAGCAACCCAGCTGCCTAAGCGATGCAAAATGTGACAGGCGG
CAGCAGCAGTAGCCTCATCAAAGGTTAGCTCACCAATAGCCCCAGCTAAA
TATTAAACAAATACGGAAATAAGAGTCTAAGGCCATTAACTAAACGGCTG
ACTAAGCTGTAAAATGCAAAGTAATTCAAATTTCAACTAGCTAGGATATG
AACCGCAAGCAAAAAATACATTCAAGACACCAACCGCAAAGCACAAACAT
TTTGAAAAGGGCAGCAGCAATAACAAAACAAACCACCACCAACAAAGGTT
GAGGAAAACCGCGCGTAAGCAACAACAAACGAATTAGGCGAAGGAGAGAA
AGGTGGAAGATAGAAACAAAAGGCAGATTTTTGGCATTCGCCTAGCGTGG
ACAACAACCAACCAGTACATCAACCAATCAATTTGGTAATTAGGCAAAAT
ACGTGCTGCAAAAAATAGCTCAACGATCAGGCTGAGAGGAGAGTGACAGA
CTGAAACGAAGGCAGTTCGCCTGGATCAACGGAATGCCCAGCACGGCGGG
CAGTGCAGCTGGCGTTGGTATGGGCGCCCTGATCAACAGTGCCGGCAGCA
GCGCCAGTAGTGTCATGGGCATTGGCATGGGCAGAGCAGCTGCTACGGGA
GCAGGAGCACCAGGCAGTTCGGGATCTGGAGCAGATGCCTCCGCCGCCGG
CACTTTAATCGCCCAGAGCACGGCGGGAACGAGCGCCGCCAGCAGTGGAA
CGATCACCTGGGACAACAATGGAACCCTGCGATCGATCAATCCCGGCGAT
TGGTCCATCGAACAGTGCCTCGGGCCACATCACCTGTACTTTCAGCTCGG
CTGGGCCTTTCTCTTCCTAGCCTTTTTGGCTCCACACGGTCCCTACGGCG
CCCTGTGGATGCGTGCCATGCTGCTCATTGGCTGCCTGATGATGGGCATG
CATGGCTACTTGGTGGCCTTTGCACCGGACGTCATCCTGTGGTCGGGCAT
GGGACTTTTTGTCAACTTCATCTATCTCGTCGTGGTGCTATGCCGGCTGA
GGCCTGTGCGATTCGAGCAGGAAATCGAAGCGGTCTACCTGGCACTTTTC
CAGCCGCTGCACGTGACGCGCCACCAGTTCAAGAAGGTGCTCAACTGCAT
GAAGGTGATACGTGCCCTGAAGTACCAGGAGGTCTACGCCCAGGAGAAGG
TCACCAAGGTCGACAGCCTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTG
TCGCAGCATCAGCGCGCCCTGCACATTGTGTTTCCCCATCAGTTCCTAGA
CTCGCCAGAATGGTTTGGCGTCTCGACCGATGACTACTTTCAGGTCTCCA
TCATGGCCATGGAGGAGTCGCGGGTGCTGATCTGGCATCGCGACAAGCTC
AAATTGTCAATTATGGCCGAGCCCTTCTTGCAGACCGTCTTCGATCACAT
TCTGGGCCGGGATGTGGTCAAGAAGCTGATGCAGGTCACCCAGGTGAGCG
AGTCGATAGCCAGCAATGGCTTCCTGCCCTCTGGTGGATATGCTGAGGAT
GCGGAGGACAAGCCCATGTTGATACTAAAGAAGAGTGTGGATGTGGGACA
CGGACTGACGGCCCTGATCAACCGGCAGCTACAGGACGAGCATGTTCCTT
TACTCGGTCGCACGTACAAACAACAACAACAACAACAACAACTACTGCTA
CTGCAACAACAACTAGAACAACAACGCGTACAAGAAGCAACAACCAGCGC
CAACAACATCGAGCAAAGTGCAATCTGAATTTATGCAACCGCCCGCTGCT
GCTCAACTTGCCACGAACAGAAATCAGAGCACCCATCCGTCCCTTCACCT
TTGACCTGCACAAGAACTACCAGAAAAACAACCCCACCCACACATGCAAA
CAGCCATCAGCCATCAGTCATCAGTCAGTCAGTCATCAATCATGCGCAGC
CACACCAACAGCAACATCGATCACGATCATCAGAAAAGAGCGAAAAGAGC
TGTCGAAGATATCTGGAAGCTATCCATCTAAATCCGCATCCTAAGTTCCA
TATATAATAATCTCATCTTTAGCATAGCAACTAGCACTAGCTAAACAAGC
ATCTAACACATCTAATCGTTCTAATAGCAAACTTTGTATTGCCCCCACAA
CTGCAAACAATTAGCCAGAGACTTGAGTTTTTGTGTAAAGTAATTGACTT
TGGGAAACATAAACTTTTCGTCTCAGCGGAAAAGTGCTAAAACACCGTGT
TACCATTTAGAAGAAACTTGGAGAAGTTACTAAAGAAGTTTACAGGCGTG
AAAAAAAAAAATGATTCGCCATTTCCCCTGATAACCCTTTTTAGGAGGTT
TATTCAAAAAACATAAGTAGTCTTTTATCAAACGTACACTGACTTAAATC
TAGGAAACTGGGAGAACTGCCTAAAATGATTTGTAGTTTCACCTGACAAC
TCTATTTAGCAGTGTAGAGAAAAACGTAACATCGTAGACCGTTATTAAAA
AAAAAAACAAGAAAAAAAACTATTCAATTAAACCCGTAGTAATATACTTG
TATTCCATGAAGATAAAGAAACCAATTATTTCACAAAGAAAACACAAATA
CAAGTAGGAAACTTACTTACATTGCAACACTGTTGAATTCAATATGCTCC
CTGAATCCTTCGCAAAAACTATCGTTAACTGCAGTCAAACCAGTTGTAAA
AATTGTAATTTATTTTGACTTATCATGGTTGTATGTATGTTGAGTTGTAG
TCAGACAAGACACTTGATTGCACATGAATTAGTTTCAGTTTGAGTGGGGT
TTTCAATTGAACACGATCAGAAAGCCAACCAAGGTTTAAATTTGAAATTA
ATTGATCGTGGTTTTGAGTTTGAATTGGAATTAGTAATATTTGATATATC
ACGCAGTATACAAACATTTTATATTAGTGGAAGTTTTTGAGTCGATCTTC
TACAATATAAACGATTATTACACTCGTGTAATAAAGGAAACCTTTGTAGA
CGCAGACTATTTTCCAAGAACCTATTATAAGTATAATGACTAGCATTGGA
ACTGGTTTGATTACAGCTCTTCAGCTTCAATTACCGATTCTAGATCTCAA
GATCGATCAGTCTAGTGACAGGTGATAGGTAATTAATGAACTTTTCCGCT
GGGCCAGGAGTTTTCAACGCTTTATTTGATTAAATTCTTATTTCTTACCG
CTTGGCATTTACTGGAAATTTACTGTGCTGGCACATCAATCAAGTCTCTA
AATCTTCCATTAACACATTATTATTTTATTTGTATTTCTATATGCATACG
TATTTTGCGTTGATTCGTTGATTGATTTGCATACAAATTGAGCTTGAAGA
AAGCGTGAAAACTAATTAGAATTAATATCGAATAATATTTGATAATGTTA
AGCAATACATAGCCTAAGTTGTTGTACATACGCTATATATATATATTTGC
TGTACATAATCCCGAGTGCCCTCAAATCCGAGAACCACACCCCCGTCCCC
TAATCTCCACTAATACTCCCCCAAGAAAGTGTAATAAACGTAGTGGAATC
AATGTGAATGTAAACAAGCCAAAAACCGAAAGCTAATAAAACAAAAAAAA
AACACACAAAAAAAAAAAAAAAA

RE59473.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RA 3908 bves-RA 1..3908 1..3907 19470 99.9 Plus
bves.e 3658 bves.e 1..3658 248..3907 18165 99.8 Plus
bves-RB 4057 bves-RB 312..3904 317..3908 17895 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20942121..20944094 1935..3907 9790 99.8 Plus
chrX 22417052 chrX 20925649..20926716 317..1384 5340 100 Plus
chrX 22417052 chrX 20919164..20919479 1..316 1580 100 Plus
chrX 22417052 chrX 20940521..20940679 1382..1540 795 100 Plus
chrX 22417052 chrX 20940927..20941081 1641..1795 775 100 Plus
chrX 22417052 chrX 20941196..20941339 1792..1935 720 100 Plus
chrX 22417052 chrX 20940749..20940853 1541..1645 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21076964..21078938 1935..3908 9795 99.8 Plus
X 23542271 X 21060492..21061559 317..1384 5340 100 Plus
X 23542271 X 21054007..21054322 1..316 1580 100 Plus
X 23542271 X 21075364..21075522 1382..1540 795 100 Plus
X 23542271 X 21075770..21075924 1641..1795 775 100 Plus
X 23542271 X 21076039..21076182 1792..1935 720 100 Plus
X 23542271 X 21075592..21075696 1541..1645 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21062056..21064030 1935..3908 9805 99.8 Plus
X 23527363 X 21045584..21046651 317..1384 5340 100 Plus
X 23527363 X 21039099..21039414 1..316 1580 100 Plus
X 23527363 X 21060456..21060614 1382..1540 795 100 Plus
X 23527363 X 21060862..21061016 1641..1795 775 100 Plus
X 23527363 X 21061131..21061274 1792..1935 720 100 Plus
X 23527363 X 21060684..21060788 1541..1645 525 100 Plus
Blast to na_te.dros performed 2019-03-16 08:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2804 1969..2289 143 56.1 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 609..728 953..835 140 62.4 Minus
opus 7521 opus OPUS 7521bp 6114..6245 3593..3461 122 55.6 Minus

RE59473.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:47:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20919164..20919479 1..316 100 -> Plus
chrX 20925649..20926714 317..1382 100 -> Plus
chrX 20940522..20940679 1383..1540 100 -> Plus
chrX 20940749..20940851 1541..1643 100 -> Plus
chrX 20940930..20941079 1644..1793 100 -> Plus
chrX 20941198..20941339 1794..1935 100 -> Plus
chrX 20942122..20942154 1936..1968 100 == Plus
chrX 20942212..20944071 2026..3884 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:26:30 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 1..1245 834..2078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 1..1245 834..2078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:57:00 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1..1245 834..2078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:53 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 1..1245 834..2078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:11 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1..1245 834..2078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:26:30 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1..3885 1..3884 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1..3885 1..3884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:57:00 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 45..3929 1..3884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:53 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1..3885 1..3884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:11 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 45..3929 1..3884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
X 21075365..21075522 1383..1540 100 -> Plus
X 21075592..21075694 1541..1643 100 -> Plus
X 21075773..21075922 1644..1793 100 -> Plus
X 21076041..21076182 1794..1935 100 -> Plus
X 21054007..21054322 1..316 100 -> Plus
X 21060492..21061557 317..1382 100 -> Plus
X 21076965..21078914 1936..3884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
X 21075365..21075522 1383..1540 100 -> Plus
X 21075592..21075694 1541..1643 100 -> Plus
X 21075773..21075922 1644..1793 100 -> Plus
X 21076041..21076182 1794..1935 100 -> Plus
X 21054007..21054322 1..316 100 -> Plus
X 21060492..21061557 317..1382 100 -> Plus
X 21076965..21078914 1936..3884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:32 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
X 21075365..21075522 1383..1540 100 -> Plus
X 21075592..21075694 1541..1643 100 -> Plus
X 21075773..21075922 1644..1793 100 -> Plus
X 21076041..21076182 1794..1935 100 -> Plus
X 21054007..21054322 1..316 100 -> Plus
X 21060492..21061557 317..1382 100 -> Plus
X 21076965..21078914 1936..3884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:57:00 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20947068..20947209 1794..1935 100 -> Plus
arm_X 20946800..20946949 1644..1793 100 -> Plus
arm_X 20925034..20925349 1..316 100 -> Plus
arm_X 20931519..20932584 317..1382 100 -> Plus
arm_X 20946392..20946549 1383..1540 100 -> Plus
arm_X 20946619..20946721 1541..1643 100 -> Plus
arm_X 20947992..20949941 1936..3884 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:57 Download gff for RE59473.complete
Subject Subject Range Query Range Percent Splice Strand
X 21039099..21039414 1..316 100 -> Plus
X 21045584..21046649 317..1382 100 -> Plus
X 21060457..21060614 1383..1540 100 -> Plus
X 21060684..21060786 1541..1643 100 -> Plus
X 21060865..21061014 1644..1793 100 -> Plus
X 21061133..21061274 1794..1935 100 -> Plus
X 21062057..21064006 1936..3884 99   Plus

RE59473.pep Sequence

Translation from 833 to 2077

> RE59473.pep
MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA
DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH
LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV
ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK
KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF
PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ
TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK
SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ
EATTSANNIEQSAI*

RE59473.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21712-PA 424 GF21712-PA 1..382 1..379 1875 93.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19706-PA 400 GG19706-PA 1..400 13..414 2031 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11835-PA 433 GH11835-PA 1..394 1..387 1683 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
bves-PB 414 CG32513-PB 1..414 1..414 2119 100 Plus
bves-PA 414 CG32513-PA 1..414 1..414 2119 100 Plus
bves-PD 388 CG32513-PD 1..367 1..367 1889 100 Plus
bves-PC 399 CG32513-PC 1..367 1..367 1889 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14313-PA 424 GI14313-PA 1..388 1..384 1706 85.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16399-PA 382 GL16399-PA 1..200 186..385 1046 98 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22366-PA 426 GA22366-PA 1..426 1..414 1721 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23060-PA 410 GM23060-PA 1..410 1..414 2106 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17511-PA 278 GD17511-PA 48..278 181..414 1181 96.2 Plus
Dsim\GD24703-PA 192 GD24703-PA 1..182 1..183 913 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19369-PA 419 GJ19369-PA 1..385 1..388 1719 86.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25611-PA 414 GK25611-PA 1..388 1..379 1591 79.1 Plus
Dwil\GK23556-PA 68 GK23556-PA 1..58 294..351 226 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17905-PA 412 GE17905-PA 1..412 1..414 2117 97.4 Plus

RE59473.hyp Sequence

Translation from 833 to 2077

> RE59473.hyp
MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA
DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH
LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV
ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK
KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF
PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ
TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK
SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ
EATTSANNIEQSAI*

RE59473.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
bves-PB 414 CG32513-PB 1..414 1..414 2119 100 Plus
bves-PA 414 CG32513-PA 1..414 1..414 2119 100 Plus
bves-PD 388 CG32513-PD 1..367 1..367 1889 100 Plus
bves-PC 399 CG32513-PC 1..367 1..367 1889 100 Plus