Clone RE59544 Report

Search the DGRC for RE59544

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:595
Well:44
Vector:pFlc-1
Associated Gene/TranscriptCG14435-RB
Protein status:RE59544.pep: wuzgold
Sequenced Size:3616

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14435 2003-01-01 Sim4 clustering to Release 3
CG14435 2008-04-29 Release 5.5 accounting
CG14435 2008-08-15 Release 5.9 accounting
CG14435 2008-12-18 5.12 accounting

Clone Sequence Records

RE59544.complete Sequence

3616 bp (3616 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023885

> RE59544.complete
CCCGATTGGACTAACGCCTCTGTTGATATCGAGAAACTCTTTTAATGTAA
TGTATAAAAAAAAATTAAAAAAAAATATGGAAAACGGTCATTTAAATTGA
GAGTGTAATCAAGGCAGATTGGCCAGCAGCGTCGTGTCGCGTCACACCTA
TTTTTTAGTCGGCGAGAGCAGCAGTAGTGCACCGCGTAGCGTTTGGATCC
GATTCCATAGGATTAGGCAGCAGGAGCCCGTTGCAAGTGGCAAGTAGCAA
GTAGTAGCAGACGCAGGAGCAGCTAGTGCCCATCATCCATCAGTCATCGG
TTGTCATCGGGAGTCATCATCCGGCGACCGCAGAGCCGACTCGAGTTCCA
AATATACCGGAGAACCAGAGCAACTGAACACCTGAGCATCTGAAACATCT
GAAACATCTGAGTCCCCGGAATCAGCAGGCGGAGGACAAGAAAACGGGGC
AGCAACAATAACAATCGCGACTCAACTACGCACCGATTGACGCCCGCCCC
CCGTCCTTGCCACCTACTCCCACCCCCGCCCCCCATCCACTCCACGAGCA
CCATCACTTTTGGCACAAACACCAAAACACACTCACACACACACACACTC
GCACACACACACACAAGCACGCACACACATACACTTATCAAGCGAGCGAC
AAAAAAGCGACCGCATTTATCATCCGCACATCGCAAATCGCACATCGCAT
TGTTTGCTATTGTTGTCTGCTCCGTTTTTCGCACGCGAAGGAGCAGACAA
AGAGGACGCCTCGCGGAGGCGGAGAATTGCAGAAGGCGCTGCTGGAGCAG
CAGCAGGAGCAGCAGCTGGAGCAGGCGCAGGTGGTCAAAGGTTCGTCGCC
CAGTTAATAATTCCATCAGCATCTATGGGTCAAAAGGCGAGCACTCCGGC
GACCAGTGGCCAACAGAGCCCACGCTCCAGGACATTCTCGAGCAGTTCAA
CAGGAGCCGCCGATTCTGCGCTGCAGCAGCAGCAACACCAGCACTCGAAT
CCCGGCCAGAATCGTGGCGGTAACGGCGGCGGCGGTGGCGGCAATGATAC
CACCGGTCAGGGTTTCAATCTGCTGCGCACTTTGCCCGGCCTGCAGGTGT
ACCACAACCAAAACTCCACGTCCATCGATCGCCAGCGGGCGCGGAGTCTC
AGCTCCGTGCCGGATATACAGCAGCAGGCGCAGCAGCAGCAGCAACAGGG
ATCGATCACCTCGTCCGGCAGCAGTCCGCATTCGCATCCGCATGCCGCGC
ACGGCCATCCGGCCGTCGGTGTCACCGTATCCGTGTCCGGTAATGCGAAT
GCCAATAGCAACAGCAACTTCACAGCCGCCGGGAACAACAATGGATCCGC
CATGCAGTCCTACATGCAGCAGAGACGCACTCTCGGCGATTCCATAAGGG
ACATGTCAATGACCGGCGGCAGCATCGCCGAGAGCATCGCCCTGGCCGCT
TCCGCCACGTCCGCCAATGGGATCGGTCGTGTCTACACGGCCACCTCGCT
TCCATCGCACATTTGGTCCTTCAATGGTATCAAGTGTCCCGTGTGCAATA
AGTTTGTGTTGCCAGACGACATCGAATGCCATTTAGTCATGTGCCTAACG
AAACCACGACTCTCATATAACGAGGACGTACTCTCGGACGCCAAGGGCGA
GTGCGTCATTTGCCTGGAGGATCTGAGTCCGGGGGACACCATCGCCCGGC
TGCCATGCCTCTGCATATATCACAAAGGGTGAGCACGCGGGGATCTCTAA
AATCTCAGTAATTAGGGCACTTAAATGTGGGATACTTTCAAACTATTACT
ACTTTCGATGGCACTGTAGGAAATATTTAAATATTTATATTTAAAATCCA
ATCGATGGAAAATTAATCTACAAATTTAACGAACCATAACTTCGAAGATT
CTATCAATTATTTTGAAAGTTCTGATGTTTTTTTCACTGGGCGATATTAA
GACCATCAAAATTAGCGAAAATTGGTCAAAAATTAAATTTTTCAATTATG
AACACCATTTGATACGAAATCAAATAACAAGCTGAACGAGATATGCCGCT
TCATATTTGGACCAATATTTCCCTTTTTATGGCAAAAAAACCAAAAAAAC
AAAAAATTGTTCATTCAAAAAATAGACAAAATGAGTTTTGAAAAAAAATT
GATTTTTTAAAGGGTTTTTAAACATAACTTGGGCAAAAGTCGTCACACGA
CAAAAAGATTGACTGTTTTATGAAGCTCAAGAGCAATACTAACAATGCCT
AACATTTTTTGAAATATTAAAAAAATATTTTTTTTAATTTTTTACCGATG
ATATGGCAGAAATATTGATTTTTTTAAGGAAAATGAGAAATAGGGGTTTT
TGCAACTAAACTTGGTTCTTGGTTATATAAAACAGATAAAAGTTTCAATA
TTTTATAAACTATTCTCCAGCTAGTTTAGTTAGTTTATTGCAGACGGTTG
TAAACCCGCACAGTAGGAAATTACAATCTTATCTGAAAAGTAATCACGAA
ACTTGCCCTTTAAGAAAAAAGCTGGCGCAAGCCGAACAAACAAAACGCAG
AACAAAGAGTCAATAACTAGAAATTGAGGAGTGTCTGAGTTTGAATTTTC
ATTCATCCCGCCCCCTTTTGGGGTCATAAATTTAAAAATAAGTATGCTCG
CATAATGGGCGCTTGTACTGCGAGCACTCAGTTTTTTTCACCCCGAAACG
CTGACAGTGCTAATTACATTTCGTTTGCTACTTTCGCCCCCCACCCCTGC
CACACTGCACAGATGCATCGACCGTTGGTTTGAGGTGAATCGCTCTTGCC
CTGAGCATCCTGGAGATTAATAATCCTCGCCAGGTCTCGCCGTGTTGTTT
GTGTGGAGATGGAGTTAGGGAGCAGGAATCGTTTATGGAACTGGAACTGG
CCAGCTGGGCGCAGTGCGAGGATGGGTCTGGTCTCTGGGTTGGGACGTAG
ATCTCAGGCCCAGTGGCCACACACTGTGCACCCTTTGGACACTGCGACCA
GTTGGAGCTTGGAAAGATTGGAGGATGGTACATGGGAGAGGCTATGCCAC
AAAATGCTAATCTTGAGCGTGGGATCGAGGCATCGATCGTTTGACCTACC
GACCGAAAAAACCGATCGACCGCTGGTTGAACCCAAAAACACACACAAAT
CAATTGAAACAAATTAATTTACAATGCTAAACTGGCAGTATAATAGTAAT
AAACGTAATGCTAATAACAAGTGAATTATATAAGTAACGAAATCAACCAA
CCCACAAAAACTACAAGAAGGAGGAAGCAACAAGCAGAAGATTTTGATGA
TGACGAACGAGATGAGAATAAGGATGAGCGTAAAAGTGTAAAGCGAAGCA
ACCAACCAACCAACAAAAGAATGTCAACCAATGTGATGTTAAATTTTATA
TTTTGTACTATGGATAATGATGTAATTGTAATTGTAATGTATATGTATGT
ATTTATTATTTTAAACAGGACTAAAATAGGATAAACACAAGCGTAAGAAG
AGAACACACACACACACACACACACAAGAAAATAACAATAACAAATACTA
TTAATAACTATGTTAAATTAGAAGACAAGCAAACGAAAACGAAAAGCAAA
GCAACCAAAAAAAAAA

RE59544.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14435-RB 3625 CG14435-RB 1..3616 1..3616 18035 99.9 Plus
CG14435-RA 2774 CG14435-RA 26..1753 1..1728 8610 99.8 Plus
CG14435-RA 2774 CG14435-RA 1753..2607 2762..3616 4260 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6734706..6736112 1400..1 6535 98.2 Minus
chrX 22417052 chrX 6732539..6733758 2835..1622 5680 98.3 Minus
chrX 22417052 chrX 6731617..6732238 3606..2977 2980 98.6 Minus
chrX 22417052 chrX 6732291..6732441 2981..2831 710 98 Minus
chrX 22417052 chrX 6734008..6734137 1528..1399 650 100 Minus
chrX 22417052 chrX 6733836..6733932 1622..1526 455 97.9 Minus
chrX 22417052 chrX 6243316..6243432 2070..1954 210 78.6 Minus
chrX 22417052 chrX 8998557..8998674 1954..2071 200 78 Plus
chrX 22417052 chrX 5353145..5353261 1954..2070 195 77.8 Plus
chrX 22417052 chrX 11423060..11423176 2070..1954 195 77.8 Minus
chrX 22417052 chrX 11546631..11546747 1954..2070 195 77.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6842521..6843920 1400..1 6970 99.9 Minus
X 23542271 X 6840362..6841575 2835..1622 6070 100 Minus
X 23542271 X 6839422..6840061 3616..2977 3185 99.8 Minus
X 23542271 X 6840114..6840264 2981..2831 740 99.3 Minus
X 23542271 X 6841825..6841954 1528..1399 650 100 Minus
X 23542271 X 6841653..6841749 1622..1526 485 100 Minus
X 23542271 X 6351120..6351236 2070..1954 210 78.6 Minus
X 23542271 X 9106762..9106879 1954..2071 200 78 Plus
X 23542271 X 11531866..11531982 2070..1954 195 77.8 Minus
X 23542271 X 11655456..11655572 1954..2070 195 77.8 Plus
X 23542271 X 5460555..5460671 1954..2070 195 77.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6850619..6852018 1400..1 6970 99.8 Minus
X 23527363 X 6848460..6849673 2835..1622 6070 100 Minus
X 23527363 X 6847520..6848159 3616..2977 3185 99.8 Minus
X 23527363 X 6848212..6848362 2981..2831 740 99.3 Minus
X 23527363 X 6849923..6850052 1528..1399 650 100 Minus
X 23527363 X 6849751..6849847 1622..1526 485 100 Minus
X 23527363 X 6359218..6359334 2070..1954 210 78.6 Minus
X 23527363 X 9114860..9114977 1954..2071 200 77.9 Plus
X 23527363 X 11539964..11540080 2070..1954 195 77.7 Minus
X 23527363 X 11663554..11663670 1954..2070 195 77.7 Plus
Blast to na_te.dros performed 2019-03-15 14:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 3811..4107 2416..2122 130 53.8 Minus
gypsy6 7826 gypsy6 GYPSY6 7826bp 214..258 3383..3339 117 73.3 Minus
gypsy6 7826 gypsy6 GYPSY6 7826bp 7633..7677 3383..3339 117 73.3 Minus
TART-C 11124 TART-C TARTC 11124bp 9180..9219 972..1014 117 81.4 Plus

RE59544.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:28:27 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6731645..6732233 2982..3578 96 <- Minus
chrX 6732291..6732438 2834..2981 97 <- Minus
chrX 6732541..6733094 2284..2833 98 == Minus
chrX 6733413..6733757 1623..1967 91 <- Minus
chrX 6733836..6733931 1527..1622 97 <- Minus
chrX 6734010..6734136 1400..1526 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:27:21 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:14 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RB 1..858 875..1732 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 00:28:51 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 16:30:11 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 20:58:36 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:22:26 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RA 1..1728 1..1728 99 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:14 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RB 1..3606 1..3606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:28:51 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RA 2..1729 1..1728 99 == Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:11 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RA 1..1472 257..1728 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:58:36 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
CG14435-RA 2..1729 1..1728 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:27 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
X 6841827..6841953 1400..1526 100 <- Minus
X 6839432..6840056 2982..3606 100 <- Minus
X 6840114..6840261 2834..2981 99 <- Minus
X 6840364..6841574 1623..2833 100 <- Minus
X 6841653..6841748 1527..1622 100 <- Minus
X 6842522..6843920 1..1399 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:27 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
X 6841827..6841953 1400..1526 100 <- Minus
X 6839432..6840056 2982..3606 100 <- Minus
X 6840114..6840261 2834..2981 99 <- Minus
X 6840364..6841574 1623..2833 100 <- Minus
X 6841653..6841748 1527..1622 100 <- Minus
X 6842522..6843920 1..1399 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:27 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
X 6841827..6841953 1400..1526 100 <- Minus
X 6839432..6840056 2982..3606 100 <- Minus
X 6840114..6840261 2834..2981 99 <- Minus
X 6840364..6841574 1623..2833 100 <- Minus
X 6841653..6841748 1527..1622 100 <- Minus
X 6842522..6843920 1..1399 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:28:51 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6734147..6734294 2834..2981 99 <- Minus
arm_X 6733465..6734089 2982..3606 100 <- Minus
arm_X 6734397..6735607 1623..2833 100 <- Minus
arm_X 6735686..6735781 1527..1622 100 <- Minus
arm_X 6735860..6735986 1400..1526 100 <- Minus
arm_X 6736555..6737953 1..1399 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:33 Download gff for RE59544.complete
Subject Subject Range Query Range Percent Splice Strand
X 6847530..6848154 2982..3606 100 <- Minus
X 6848212..6848359 2834..2981 99 <- Minus
X 6848462..6849672 1623..2833 100 <- Minus
X 6849751..6849846 1527..1622 100 <- Minus
X 6849925..6850051 1400..1526 100 <- Minus
X 6850620..6852018 1..1399 99   Minus

RE59544.hyp Sequence

Translation from 874 to 1731

> RE59544.hyp
MGQKASTPATSGQQSPRSRTFSSSSTGAADSALQQQQHQHSNPGQNRGGN
GGGGGGNDTTGQGFNLLRTLPGLQVYHNQNSTSIDRQRARSLSSVPDIQQ
QAQQQQQQGSITSSGSSPHSHPHAAHGHPAVGVTVSVSGNANANSNSNFT
AAGNNNGSAMQSYMQQRRTLGDSIRDMSMTGGSIAESIALAASATSANGI
GRVYTATSLPSHIWSFNGIKCPVCNKFVLPDDIECHLVMCLTKPRLSYNE
DVLSDAKGECVICLEDLSPGDTIARLPCLCIYHKG*

RE59544.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14435-PC 303 CG14435-PC 1..285 1..285 1495 100 Plus
CG14435-PA 303 CG14435-PA 1..285 1..285 1495 100 Plus

RE59544.pep Sequence

Translation from 874 to 1731

> RE59544.pep
MGQKASTPATSGQQSPRSRTFSSSSTGAADSALQQQQHQHSNPGQNRGGN
GGGGGGNDTTGQGFNLLRTLPGLQVYHNQNSTSIDRQRARSLSSVPDIQQ
QAQQQQQQGSITSSGSSPHSHPHAAHGHPAVGVTVSVSGNANANSNSNFT
AAGNNNGSAMQSYMQQRRTLGDSIRDMSMTGGSIAESIALAASATSANGI
GRVYTATSLPSHIWSFNGIKCPVCNKFVLPDDIECHLVMCLTKPRLSYNE
DVLSDAKGECVICLEDLSPGDTIARLPCLCIYHKG*

RE59544.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21113-PA 302 GF21113-PA 1..284 1..285 1020 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17651-PA 306 GG17651-PA 1..288 1..285 1104 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17568-PA 287 GH17568-PA 1..269 1..285 880 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14435-PC 303 CG14435-PC 1..285 1..285 1495 100 Plus
CG14435-PA 303 CG14435-PA 1..285 1..285 1495 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21644-PA 302 GI21644-PA 1..284 1..285 852 67.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16426-PA 294 GL16426-PA 1..276 1..285 1037 80.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22572-PA 296 GA22572-PA 1..278 1..285 982 80.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12546-PA 303 GM12546-PA 1..285 1..285 1475 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24583-PA 548 GD24583-PA 1..264 1..264 1354 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16882-PA 296 GJ16882-PA 1..278 1..285 842 69.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16393-PA 288 GK16393-PA 1..270 1..285 800 71.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16440-PA 297 GE16440-PA 1..279 1..285 1077 90.9 Plus