BDGP Sequence Production Resources |
Search the DGRC for RE59626
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 596 |
Well: | 26 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10005-RA |
Protein status: | RE59626.pep: gold |
Preliminary Size: | 684 |
Sequenced Size: | 1065 |
Gene | Date | Evidence |
---|---|---|
CG10005 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10005 | 2002-04-26 | Blastp of sequenced clone |
CG10005 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10005 | 2008-04-29 | Release 5.5 accounting |
CG10005 | 2008-08-15 | Release 5.9 accounting |
CG10005 | 2008-12-18 | 5.12 accounting |
1065 bp (1065 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113516
> RE59626.complete AGTTTGAATCTTGGCTTGCAGCTGTGAAGATATCTACGAGAGTCAGGAAA CTCGCTATAACTTTAAATCGTTTTGTATTAAATAATAATAAAGTGCAGTA ATATGTCGGGATTAATGAATGGCTTTCTGCTTTTGTTCGCCTGCAATTTG CTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAGAAAAATCAAAACCA AGAAATCTGGGAACAAGACCTTTCGGACACCTTTAAAATCGAGGGCAGCG ACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAGCGGACTCCATGAAC GTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTGATGTACACTCGTGG CAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAAGCCATCTTCCAGCC AGGGATCCCGCACAATGGAGATGAACTTCCAGCTGGACCAGTGCCAGACG ATCCGGGATGGTGATCTCTACACCAACATCGTGGTGATCCAAAACGACCC AGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCTGGAATGCGACTTCC GGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGCAGGCCAGGGACAGA GTGGCCACTGGTTCGAAAATCACACTCACAAGTCCTGATCCCGCGGCACC CACGGAACACCTACATAACTCGGTGGTCAGCAACAGCGACTCGGTCGCAT ACATACCAAAGTTCAGTCGGCCAAATAGAACCATACACCTGGGCTCCGTG GAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGAGATGAGCTCTAGGA ACACCTACACTCCACGAAACGATACTTAAATAGAACACAAGATACTCAAA GACATTATCACAACACTTAAAGAAACACCACAGAGTACAGGAAATTAGCA CAGAATGCGACGCAGGCGCCAACGGAAGCAAATTGATGGCAATTGTGCGG CAAATGCATTAACACCACTTCATGTATTTTCATTTAAATGGTTTTTCATA TCCTGTGATATTTTTTAAGTTTGTGTTTAATAAAAACTTGGCAAAAGTGA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10005.d | 1288 | CG10005.d | 238..1285 | 1..1048 | 5240 | 100 | Plus |
CG10005-RA | 1117 | CG10005-RA | 66..1113 | 1..1048 | 5240 | 100 | Plus |
CG10005.c | 1099 | CG10005.c | 1..891 | 1..891 | 4455 | 100 | Plus |
CG10005.c | 1099 | CG10005.c | 942..1099 | 891..1048 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7801504..7801902 | 599..201 | 1965 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 7800832..7801127 | 891..596 | 1480 | 100 | Minus |
chr3R | 27901430 | chr3R | 7802394..7802595 | 202..1 | 1010 | 100 | Minus |
chr3R | 27901430 | chr3R | 7800565..7800727 | 1048..886 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11976099..11976497 | 599..201 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 11975423..11975718 | 891..596 | 1480 | 100 | Minus |
3R | 32079331 | 3R | 11976989..11977190 | 202..1 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 11975156..11975318 | 1048..886 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11716930..11717328 | 599..201 | 1995 | 100 | Minus |
3R | 31820162 | 3R | 11716254..11716549 | 891..596 | 1480 | 100 | Minus |
3R | 31820162 | 3R | 11717820..11718021 | 202..1 | 1010 | 100 | Minus |
3R | 31820162 | 3R | 11715987..11716149 | 1048..886 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 5055..5115 | 824..885 | 118 | 67.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7800564..7800722 | 891..1049 | 99 | <- | Minus |
chr3R | 7800833..7801123 | 600..890 | 100 | <- | Minus |
chr3R | 7801504..7801900 | 203..599 | 99 | <- | Minus |
chr3R | 7802394..7802595 | 1..202 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..696 | 103..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..696 | 103..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..696 | 103..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..696 | 103..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..696 | 103..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..1048 | 1..1049 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..1048 | 1..1048 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 8..1055 | 1..1048 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 1..1048 | 1..1049 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10005-RA | 8..1055 | 1..1048 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11976099..11976495 | 203..599 | 100 | <- | Minus |
3R | 11975155..11975313 | 891..1049 | 99 | <- | Minus |
3R | 11975424..11975714 | 600..890 | 100 | <- | Minus |
3R | 11976989..11977190 | 1..202 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11976099..11976495 | 203..599 | 100 | <- | Minus |
3R | 11975155..11975313 | 891..1049 | 99 | <- | Minus |
3R | 11975424..11975714 | 600..890 | 100 | <- | Minus |
3R | 11976989..11977190 | 1..202 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11976099..11976495 | 203..599 | 100 | <- | Minus |
3R | 11975155..11975313 | 891..1049 | 99 | <- | Minus |
3R | 11975424..11975714 | 600..890 | 100 | <- | Minus |
3R | 11976989..11977190 | 1..202 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7800877..7801035 | 891..1049 | 99 | <- | Minus |
arm_3R | 7801146..7801436 | 600..890 | 100 | <- | Minus |
arm_3R | 7801821..7802217 | 203..599 | 100 | <- | Minus |
arm_3R | 7802711..7802912 | 1..202 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11716255..11716545 | 600..890 | 100 | <- | Minus |
3R | 11716930..11717326 | 203..599 | 100 | <- | Minus |
3R | 11717820..11718021 | 1..202 | 100 | Minus | |
3R | 11715986..11716144 | 891..1049 | 99 | <- | Minus |
Translation from 102 to 797
> RE59626.hyp MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*
Translation from 102 to 797
> RE59626.pep MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23187-PA | 231 | GF23187-PA | 1..231 | 1..231 | 1092 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17174-PA | 231 | GG17174-PA | 1..231 | 1..231 | 1220 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12788-PA | 229 | GH12788-PA | 19..229 | 19..231 | 935 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10005-PA | 231 | CG10005-PA | 1..231 | 1..231 | 1193 | 100 | Plus |
CG10005-PB | 182 | CG10005-PB | 1..166 | 1..166 | 866 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24066-PA | 232 | GI24066-PA | 36..232 | 34..231 | 928 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21589-PA | 225 | GL21589-PA | 1..225 | 1..231 | 972 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10003-PA | 236 | GA10003-PA | 1..236 | 1..231 | 1050 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26054-PA | 232 | GM26054-PA | 1..232 | 1..231 | 1221 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20617-PA | 232 | GD20617-PA | 1..232 | 1..231 | 1221 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23714-PA | 231 | GJ23714-PA | 35..231 | 34..231 | 932 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11672-PA | 215 | GK11672-PA | 1..215 | 16..231 | 925 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24564-PA | 231 | GE24564-PA | 1..231 | 1..231 | 1224 | 98.3 | Plus |