Clone RE59626 Report

Search the DGRC for RE59626

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:596
Well:26
Vector:pFlc-1
Associated Gene/TranscriptCG10005-RA
Protein status:RE59626.pep: gold
Preliminary Size:684
Sequenced Size:1065

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10005 2002-01-01 Sim4 clustering to Release 2
CG10005 2002-04-26 Blastp of sequenced clone
CG10005 2003-01-01 Sim4 clustering to Release 3
CG10005 2008-04-29 Release 5.5 accounting
CG10005 2008-08-15 Release 5.9 accounting
CG10005 2008-12-18 5.12 accounting

Clone Sequence Records

RE59626.complete Sequence

1065 bp (1065 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113516

> RE59626.complete
AGTTTGAATCTTGGCTTGCAGCTGTGAAGATATCTACGAGAGTCAGGAAA
CTCGCTATAACTTTAAATCGTTTTGTATTAAATAATAATAAAGTGCAGTA
ATATGTCGGGATTAATGAATGGCTTTCTGCTTTTGTTCGCCTGCAATTTG
CTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAGAAAAATCAAAACCA
AGAAATCTGGGAACAAGACCTTTCGGACACCTTTAAAATCGAGGGCAGCG
ACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAGCGGACTCCATGAAC
GTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTGATGTACACTCGTGG
CAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAAGCCATCTTCCAGCC
AGGGATCCCGCACAATGGAGATGAACTTCCAGCTGGACCAGTGCCAGACG
ATCCGGGATGGTGATCTCTACACCAACATCGTGGTGATCCAAAACGACCC
AGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCTGGAATGCGACTTCC
GGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGCAGGCCAGGGACAGA
GTGGCCACTGGTTCGAAAATCACACTCACAAGTCCTGATCCCGCGGCACC
CACGGAACACCTACATAACTCGGTGGTCAGCAACAGCGACTCGGTCGCAT
ACATACCAAAGTTCAGTCGGCCAAATAGAACCATACACCTGGGCTCCGTG
GAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGAGATGAGCTCTAGGA
ACACCTACACTCCACGAAACGATACTTAAATAGAACACAAGATACTCAAA
GACATTATCACAACACTTAAAGAAACACCACAGAGTACAGGAAATTAGCA
CAGAATGCGACGCAGGCGCCAACGGAAGCAAATTGATGGCAATTGTGCGG
CAAATGCATTAACACCACTTCATGTATTTTCATTTAAATGGTTTTTCATA
TCCTGTGATATTTTTTAAGTTTGTGTTTAATAAAAACTTGGCAAAAGTGA
AAAAAAAAAAAAAAA

RE59626.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005.d 1288 CG10005.d 238..1285 1..1048 5240 100 Plus
CG10005-RA 1117 CG10005-RA 66..1113 1..1048 5240 100 Plus
CG10005.c 1099 CG10005.c 1..891 1..891 4455 100 Plus
CG10005.c 1099 CG10005.c 942..1099 891..1048 790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7801504..7801902 599..201 1965 99.5 Minus
chr3R 27901430 chr3R 7800832..7801127 891..596 1480 100 Minus
chr3R 27901430 chr3R 7802394..7802595 202..1 1010 100 Minus
chr3R 27901430 chr3R 7800565..7800727 1048..886 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 599..201 1995 100 Minus
3R 32079331 3R 11975423..11975718 891..596 1480 100 Minus
3R 32079331 3R 11976989..11977190 202..1 1010 100 Minus
3R 32079331 3R 11975156..11975318 1048..886 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11716930..11717328 599..201 1995 100 Minus
3R 31820162 3R 11716254..11716549 891..596 1480 100 Minus
3R 31820162 3R 11717820..11718021 202..1 1010 100 Minus
3R 31820162 3R 11715987..11716149 1048..886 815 100 Minus
Blast to na_te.dros performed 2019-03-16 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 5055..5115 824..885 118 67.7 Plus

RE59626.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:50:44 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7800564..7800722 891..1049 99 <- Minus
chr3R 7800833..7801123 600..890 100 <- Minus
chr3R 7801504..7801900 203..599 99 <- Minus
chr3R 7802394..7802595 1..202 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:25 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 103..798 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:40 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 103..798 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:18 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 103..798 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:03 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 103..798 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:08 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 103..798 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:56 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..1048 1..1049 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:40 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..1048 1..1048 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:18 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 8..1055 1..1048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:03 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..1048 1..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:08 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 8..1055 1..1048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:44 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11976099..11976495 203..599 100 <- Minus
3R 11975155..11975313 891..1049 99 <- Minus
3R 11975424..11975714 600..890 100 <- Minus
3R 11976989..11977190 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:44 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11976099..11976495 203..599 100 <- Minus
3R 11975155..11975313 891..1049 99 <- Minus
3R 11975424..11975714 600..890 100 <- Minus
3R 11976989..11977190 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:44 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11976099..11976495 203..599 100 <- Minus
3R 11975155..11975313 891..1049 99 <- Minus
3R 11975424..11975714 600..890 100 <- Minus
3R 11976989..11977190 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:18 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7800877..7801035 891..1049 99 <- Minus
arm_3R 7801146..7801436 600..890 100 <- Minus
arm_3R 7801821..7802217 203..599 100 <- Minus
arm_3R 7802711..7802912 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:48 Download gff for RE59626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11716255..11716545 600..890 100 <- Minus
3R 11716930..11717326 203..599 100 <- Minus
3R 11717820..11718021 1..202 100   Minus
3R 11715986..11716144 891..1049 99 <- Minus

RE59626.hyp Sequence

Translation from 102 to 797

> RE59626.hyp
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*

RE59626.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 231 CG10005-PA 1..231 1..231 1193 100 Plus
CG10005-PB 182 CG10005-PB 1..166 1..166 866 100 Plus

RE59626.pep Sequence

Translation from 102 to 797

> RE59626.pep
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDEL*

RE59626.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23187-PA 231 GF23187-PA 1..231 1..231 1092 90 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17174-PA 231 GG17174-PA 1..231 1..231 1220 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12788-PA 229 GH12788-PA 19..229 19..231 935 84 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 231 CG10005-PA 1..231 1..231 1193 100 Plus
CG10005-PB 182 CG10005-PB 1..166 1..166 866 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24066-PA 232 GI24066-PA 36..232 34..231 928 84.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21589-PA 225 GL21589-PA 1..225 1..231 972 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10003-PA 236 GA10003-PA 1..236 1..231 1050 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26054-PA 232 GM26054-PA 1..232 1..231 1221 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20617-PA 232 GD20617-PA 1..232 1..231 1221 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23714-PA 231 GJ23714-PA 35..231 34..231 932 85.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11672-PA 215 GK11672-PA 1..215 16..231 925 79.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24564-PA 231 GE24564-PA 1..231 1..231 1224 98.3 Plus