BDGP Sequence Production Resources |
Search the DGRC for RE59904
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 599 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14937-RA |
Protein status: | RE59904.pep: gold |
Preliminary Size: | 1338 |
Sequenced Size: | 1609 |
Gene | Date | Evidence |
---|---|---|
CG14937 | 2001-12-14 | Blastp of sequenced clone |
CG14937 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14937 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14937 | 2008-04-29 | Release 5.5 accounting |
CG14937 | 2008-08-15 | Release 5.9 accounting |
CG14937 | 2008-12-18 | 5.12 accounting |
1609 bp (1609 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071550
> RE59904.complete AGTATTCCAAGTACCACGATCGAGAACAGACCGCAGATGACGTCCGCAAG CGATACAGAACCCACTGCAGTAACGCTGCTCCAGCTGAATGACGATGTCC TGGCTTTGATCATCCGCCAGCTGGACACGTACCAGCAGTTCCAGATTAGC AGGTTGAACAGGCGCTTGGCGGGCGTAGTGCACATGCTCTGGGAGACCCG TGTTCGCAACGTTGTCCTGCAGGACGAGATGTTCGGACGCTCGGGAGCCA ATTCCCGACAGTTTGTGGCTTTCATCTTGGCCCTGGCTCCGCACATGCAG CACCTGAGTTGCAAGCAGTTGGATGTCCGAAGACTGCGACTGCTCAGTAA CCACACGCTGGAGAGGATTCACTCTTTCGAGTGGCTGGGCAATGTGTATA GACGGAGACGCGTTCGCTTCGTGGATGAGGATGTGCGAATGCTGCAGAGG GTATTTCCCAATCTAAAAAGCCTCAAACTTAGAGGCTGCCAAATTACCGG AAAATACCTATGCGACCTGGATGAGCTTACCGATCTCCGCCTGCATGATT GCCATTTTCTGGAATCGCAACACTTTAGGGACATCTTCCGGCAGCTGCGA CTACGCAAATTTGACATAATGGAGGACTGTGACGAGGTGAACTGCTGTGA TCTGGCGGATCTGCAGCTGTGTCCCACACTGGAGCATATCAAGATTGCGG ATTACCACGTGTGTATGGAGTCGGATATTACGCAGCAACTACTGACATTG CCAAACCTGCGAAAGCTGTCGATCTATTCCAGGAACTTTGTCTTTGATGT CCTATCGAGGATAGTTAGTCCCACAAGTCCTCCCGGCGATGGCCGACAAA TTGAGGCCTTTAGTTTCAGTGGAGTTTTGCACGACTATGGCCGGTTCTTC AGGGAGCTGGGAAATCTTAGTCACTTGACGCGACTGGAGCTGCACAGCCA GCCAGAGGAAGAGGAGGAGAAGGAGGAGGGCGTCCAGGTGCAGTGCCTGG GGGATCAGATACTGCGGCAGCTAGCCAGTCAACTGGGTGAGCTAACCGAA CTCCATTTGTGTGGCTATCAGTTGGAGAGTCCTTTGGGCCTGCTGGAATT CGTGATCAATTGTCGACAGCTGAGAGTCCTCGACATCACTCGAACCTTCT GCCATGGAGAATCCTTCGTCTGGAGGTGTATTGCCATTTTGGCCAAGCAA AGCTGGCGCATTCGCCCTCTAGAGCTGTGGATCCGGCATAGCGATATCAA TCCGGAAATAGTTCAAAGTTCGCGCTGCGTTGATAACATAAGGCTGATAA AGGTGGATGCAAAACAGATTGGACCCAATACGGACTACACATCTGGCGTA CTCAAGTTTAGCTTTGTGCGGTAAACCGCTGCCCCATGAGTGGGATATGC TCCAACTGATCAAGCTCCAAAATGAAAAGGTTTTAAACTGAAATATAGTT AAGTGTATACATTTATCAACTGCTTACCAAATAAAAAGATGTAAATATAC ATATTTGTAAAGCGATTTTTCAATGCATCATTGTTTTTACTGCCCTTAGG GATAAAAAAAATTAAATTCAAGTTGTAGTACACTTTAAAATTCAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 212..256 | 731..773 | 121 | 77.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11791046..11792580 | 59..1593 | 98 | <- | Minus |
chr2L | 11792660..11792717 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1338 | 37..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1338 | 37..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1338 | 37..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1338 | 37..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1338 | 37..1374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1593 | 1..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1593 | 1..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 4..1596 | 1..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 1..1593 | 1..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14937-RA | 4..1596 | 1..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11792412..11793946 | 59..1593 | 100 | <- | Minus |
2L | 11794026..11794083 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11792412..11793946 | 59..1593 | 100 | <- | Minus |
2L | 11794026..11794083 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11792412..11793946 | 59..1593 | 100 | <- | Minus |
2L | 11794026..11794083 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11792412..11793946 | 59..1593 | 100 | <- | Minus |
arm_2L | 11794026..11794083 | 1..58 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11792412..11793946 | 59..1593 | 100 | <- | Minus |
2L | 11794026..11794083 | 1..58 | 100 | Minus |
Translation from 0 to 1373
> RE59904.hyp SIPSTTIENRPQMTSASDTEPTAVTLLQLNDDVLALIIRQLDTYQQFQIS RLNRRLAGVVHMLWETRVRNVVLQDEMFGRSGANSRQFVAFILALAPHMQ HLSCKQLDVRRLRLLSNHTLERIHSFEWLGNVYRRRRVRFVDEDVRMLQR VFPNLKSLKLRGCQITGKYLCDLDELTDLRLHDCHFLESQHFRDIFRQLR LRKFDIMEDCDEVNCCDLADLQLCPTLEHIKIADYHVCMESDITQQLLTL PNLRKLSIYSRNFVFDVLSRIVSPTSPPGDGRQIEAFSFSGVLHDYGRFF RELGNLSHLTRLELHSQPEEEEEKEEGVQVQCLGDQILRQLASQLGELTE LHLCGYQLESPLGLLEFVINCRQLRVLDITRTFCHGESFVWRCIAILAKQ SWRIRPLELWIRHSDINPEIVQSSRCVDNIRLIKVDAKQIGPNTDYTSGV LKFSFVR*
Translation from 36 to 1373
> RE59904.pep MTSASDTEPTAVTLLQLNDDVLALIIRQLDTYQQFQISRLNRRLAGVVHM LWETRVRNVVLQDEMFGRSGANSRQFVAFILALAPHMQHLSCKQLDVRRL RLLSNHTLERIHSFEWLGNVYRRRRVRFVDEDVRMLQRVFPNLKSLKLRG CQITGKYLCDLDELTDLRLHDCHFLESQHFRDIFRQLRLRKFDIMEDCDE VNCCDLADLQLCPTLEHIKIADYHVCMESDITQQLLTLPNLRKLSIYSRN FVFDVLSRIVSPTSPPGDGRQIEAFSFSGVLHDYGRFFRELGNLSHLTRL ELHSQPEEEEEKEEGVQVQCLGDQILRQLASQLGELTELHLCGYQLESPL GLLEFVINCRQLRVLDITRTFCHGESFVWRCIAILAKQSWRIRPLELWIR HSDINPEIVQSSRCVDNIRLIKVDAKQIGPNTDYTSGVLKFSFVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23401-PA | 445 | GF23401-PA | 4..445 | 2..445 | 1616 | 68.8 | Plus |
Dana\GF15531-PA | 405 | GF15531-PA | 3..275 | 16..300 | 165 | 23.8 | Plus |
Dana\GF15444-PA | 410 | GF15444-PA | 2..241 | 12..259 | 152 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10298-PA | 442 | GG10298-PA | 1..442 | 1..445 | 1948 | 83.6 | Plus |
Dere\GG25289-PA | 405 | GG25289-PA | 3..332 | 16..370 | 190 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13074-PA | 447 | GH13074-PA | 1..446 | 1..445 | 1471 | 65.4 | Plus |
Dgri\GH16801-PA | 414 | GH16801-PA | 4..334 | 16..368 | 203 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14937-PA | 445 | CG14937-PA | 1..445 | 1..445 | 2325 | 100 | Plus |
CG13088-PA | 401 | CG13088-PA | 3..332 | 16..370 | 244 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17693-PA | 435 | GI17693-PA | 1..435 | 1..445 | 1481 | 66.4 | Plus |
Dmoj\GI13815-PA | 412 | GI13815-PA | 4..332 | 16..368 | 199 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18891-PA | 446 | GL18891-PA | 18..446 | 11..445 | 1586 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13364-PA | 446 | GA13364-PA | 18..446 | 11..445 | 1595 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10979-PA | 442 | GM10979-PA | 1..442 | 1..445 | 2084 | 92.8 | Plus |
Dsec\GM17000-PA | 405 | GM17000-PA | 3..328 | 16..366 | 215 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22158-PA | 443 | GD22158-PA | 1..443 | 1..445 | 2101 | 93.5 | Plus |
Dsim\GD23549-PA | 327 | GD23549-PA | 3..326 | 16..364 | 222 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17480-PA | 439 | GJ17480-PA | 1..439 | 1..445 | 1474 | 65 | Plus |
Dvir\GJ11680-PA | 412 | GJ11680-PA | 4..334 | 16..370 | 206 | 23.2 | Plus |