Clone RE59904 Report

Search the DGRC for RE59904

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:599
Well:4
Vector:pFlc-1
Associated Gene/TranscriptCG14937-RA
Protein status:RE59904.pep: gold
Preliminary Size:1338
Sequenced Size:1609

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14937 2001-12-14 Blastp of sequenced clone
CG14937 2002-01-01 Sim4 clustering to Release 2
CG14937 2003-01-01 Sim4 clustering to Release 3
CG14937 2008-04-29 Release 5.5 accounting
CG14937 2008-08-15 Release 5.9 accounting
CG14937 2008-12-18 5.12 accounting

Clone Sequence Records

RE59904.complete Sequence

1609 bp (1609 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071550

> RE59904.complete
AGTATTCCAAGTACCACGATCGAGAACAGACCGCAGATGACGTCCGCAAG
CGATACAGAACCCACTGCAGTAACGCTGCTCCAGCTGAATGACGATGTCC
TGGCTTTGATCATCCGCCAGCTGGACACGTACCAGCAGTTCCAGATTAGC
AGGTTGAACAGGCGCTTGGCGGGCGTAGTGCACATGCTCTGGGAGACCCG
TGTTCGCAACGTTGTCCTGCAGGACGAGATGTTCGGACGCTCGGGAGCCA
ATTCCCGACAGTTTGTGGCTTTCATCTTGGCCCTGGCTCCGCACATGCAG
CACCTGAGTTGCAAGCAGTTGGATGTCCGAAGACTGCGACTGCTCAGTAA
CCACACGCTGGAGAGGATTCACTCTTTCGAGTGGCTGGGCAATGTGTATA
GACGGAGACGCGTTCGCTTCGTGGATGAGGATGTGCGAATGCTGCAGAGG
GTATTTCCCAATCTAAAAAGCCTCAAACTTAGAGGCTGCCAAATTACCGG
AAAATACCTATGCGACCTGGATGAGCTTACCGATCTCCGCCTGCATGATT
GCCATTTTCTGGAATCGCAACACTTTAGGGACATCTTCCGGCAGCTGCGA
CTACGCAAATTTGACATAATGGAGGACTGTGACGAGGTGAACTGCTGTGA
TCTGGCGGATCTGCAGCTGTGTCCCACACTGGAGCATATCAAGATTGCGG
ATTACCACGTGTGTATGGAGTCGGATATTACGCAGCAACTACTGACATTG
CCAAACCTGCGAAAGCTGTCGATCTATTCCAGGAACTTTGTCTTTGATGT
CCTATCGAGGATAGTTAGTCCCACAAGTCCTCCCGGCGATGGCCGACAAA
TTGAGGCCTTTAGTTTCAGTGGAGTTTTGCACGACTATGGCCGGTTCTTC
AGGGAGCTGGGAAATCTTAGTCACTTGACGCGACTGGAGCTGCACAGCCA
GCCAGAGGAAGAGGAGGAGAAGGAGGAGGGCGTCCAGGTGCAGTGCCTGG
GGGATCAGATACTGCGGCAGCTAGCCAGTCAACTGGGTGAGCTAACCGAA
CTCCATTTGTGTGGCTATCAGTTGGAGAGTCCTTTGGGCCTGCTGGAATT
CGTGATCAATTGTCGACAGCTGAGAGTCCTCGACATCACTCGAACCTTCT
GCCATGGAGAATCCTTCGTCTGGAGGTGTATTGCCATTTTGGCCAAGCAA
AGCTGGCGCATTCGCCCTCTAGAGCTGTGGATCCGGCATAGCGATATCAA
TCCGGAAATAGTTCAAAGTTCGCGCTGCGTTGATAACATAAGGCTGATAA
AGGTGGATGCAAAACAGATTGGACCCAATACGGACTACACATCTGGCGTA
CTCAAGTTTAGCTTTGTGCGGTAAACCGCTGCCCCATGAGTGGGATATGC
TCCAACTGATCAAGCTCCAAAATGAAAAGGTTTTAAACTGAAATATAGTT
AAGTGTATACATTTATCAACTGCTTACCAAATAAAAAGATGTAAATATAC
ATATTTGTAAAGCGATTTTTCAATGCATCATTGTTTTTACTGCCCTTAGG
GATAAAAAAAATTAAATTCAAGTTGTAGTACACTTTAAAATTCAAAAAAA
AAAAAAAAA

RE59904.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14937-RA 1771 CG14937-RA 179..1771 1..1593 7965 100 Plus
CG14937.a 1643 CG14937.a 816..1643 766..1593 4140 100 Plus
CG14937.a 1643 CG14937.a 108..819 1..712 3545 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11791046..11792582 1593..57 7655 99.9 Minus
chr2L 23010047 chr2L 11792660..11792717 58..1 290 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11792409..11793948 1596..57 7700 100 Minus
2L 23513712 2L 11794026..11794083 58..1 290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11792409..11793948 1596..57 7700 100 Minus
2L 23513712 2L 11794026..11794083 58..1 290 100 Minus
Blast to na_te.dros performed 2019-03-16 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 212..256 731..773 121 77.8 Plus

RE59904.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:47:35 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11791046..11792580 59..1593 98 <- Minus
chr2L 11792660..11792717 1..58 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:32 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1338 37..1374 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:22 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1338 37..1374 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:57:02 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1338 37..1374 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:36 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1338 37..1374 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:21 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1338 37..1374 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:36 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1593 1..1593 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:22 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1593 1..1593 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:57:02 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 4..1596 1..1593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:37 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 1..1593 1..1593 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:21 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
CG14937-RA 4..1596 1..1593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:35 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11792412..11793946 59..1593 100 <- Minus
2L 11794026..11794083 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:35 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11792412..11793946 59..1593 100 <- Minus
2L 11794026..11794083 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:35 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11792412..11793946 59..1593 100 <- Minus
2L 11794026..11794083 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:57:02 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11792412..11793946 59..1593 100 <- Minus
arm_2L 11794026..11794083 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:53 Download gff for RE59904.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11792412..11793946 59..1593 100 <- Minus
2L 11794026..11794083 1..58 100   Minus

RE59904.hyp Sequence

Translation from 0 to 1373

> RE59904.hyp
SIPSTTIENRPQMTSASDTEPTAVTLLQLNDDVLALIIRQLDTYQQFQIS
RLNRRLAGVVHMLWETRVRNVVLQDEMFGRSGANSRQFVAFILALAPHMQ
HLSCKQLDVRRLRLLSNHTLERIHSFEWLGNVYRRRRVRFVDEDVRMLQR
VFPNLKSLKLRGCQITGKYLCDLDELTDLRLHDCHFLESQHFRDIFRQLR
LRKFDIMEDCDEVNCCDLADLQLCPTLEHIKIADYHVCMESDITQQLLTL
PNLRKLSIYSRNFVFDVLSRIVSPTSPPGDGRQIEAFSFSGVLHDYGRFF
RELGNLSHLTRLELHSQPEEEEEKEEGVQVQCLGDQILRQLASQLGELTE
LHLCGYQLESPLGLLEFVINCRQLRVLDITRTFCHGESFVWRCIAILAKQ
SWRIRPLELWIRHSDINPEIVQSSRCVDNIRLIKVDAKQIGPNTDYTSGV
LKFSFVR*

RE59904.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14937-PA 445 CG14937-PA 1..445 13..457 2325 100 Plus
CG13088-PA 401 CG13088-PA 3..332 28..382 244 23.8 Plus

RE59904.pep Sequence

Translation from 36 to 1373

> RE59904.pep
MTSASDTEPTAVTLLQLNDDVLALIIRQLDTYQQFQISRLNRRLAGVVHM
LWETRVRNVVLQDEMFGRSGANSRQFVAFILALAPHMQHLSCKQLDVRRL
RLLSNHTLERIHSFEWLGNVYRRRRVRFVDEDVRMLQRVFPNLKSLKLRG
CQITGKYLCDLDELTDLRLHDCHFLESQHFRDIFRQLRLRKFDIMEDCDE
VNCCDLADLQLCPTLEHIKIADYHVCMESDITQQLLTLPNLRKLSIYSRN
FVFDVLSRIVSPTSPPGDGRQIEAFSFSGVLHDYGRFFRELGNLSHLTRL
ELHSQPEEEEEKEEGVQVQCLGDQILRQLASQLGELTELHLCGYQLESPL
GLLEFVINCRQLRVLDITRTFCHGESFVWRCIAILAKQSWRIRPLELWIR
HSDINPEIVQSSRCVDNIRLIKVDAKQIGPNTDYTSGVLKFSFVR*

RE59904.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23401-PA 445 GF23401-PA 4..445 2..445 1616 68.8 Plus
Dana\GF15531-PA 405 GF15531-PA 3..275 16..300 165 23.8 Plus
Dana\GF15444-PA 410 GF15444-PA 2..241 12..259 152 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10298-PA 442 GG10298-PA 1..442 1..445 1948 83.6 Plus
Dere\GG25289-PA 405 GG25289-PA 3..332 16..370 190 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13074-PA 447 GH13074-PA 1..446 1..445 1471 65.4 Plus
Dgri\GH16801-PA 414 GH16801-PA 4..334 16..368 203 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14937-PA 445 CG14937-PA 1..445 1..445 2325 100 Plus
CG13088-PA 401 CG13088-PA 3..332 16..370 244 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17693-PA 435 GI17693-PA 1..435 1..445 1481 66.4 Plus
Dmoj\GI13815-PA 412 GI13815-PA 4..332 16..368 199 25.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18891-PA 446 GL18891-PA 18..446 11..445 1586 72 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13364-PA 446 GA13364-PA 18..446 11..445 1595 72.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10979-PA 442 GM10979-PA 1..442 1..445 2084 92.8 Plus
Dsec\GM17000-PA 405 GM17000-PA 3..328 16..366 215 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22158-PA 443 GD22158-PA 1..443 1..445 2101 93.5 Plus
Dsim\GD23549-PA 327 GD23549-PA 3..326 16..364 222 23.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17480-PA 439 GJ17480-PA 1..439 1..445 1474 65 Plus
Dvir\GJ11680-PA 412 GJ11680-PA 4..334 16..370 206 23.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14974-PA 444 GK14974-PA 2..444 7..445 1514 65.9 Plus
Dwil\GK15456-PA 412 GK15456-PA 7..335 17..370 252 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12698-PA 441 GE12698-PA 1..441 1..445 2009 86.5 Plus
Dyak\GE19329-PA 405 GE19329-PA 3..332 16..370 190 23.8 Plus