Clone RE59932 Report

Search the DGRC for RE59932

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:599
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG12121-RA
Protein status:RE59932.pep: gold
Sequenced Size:2965

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12121 2002-01-01 Sim4 clustering to Release 2
CG12121 2002-04-26 Blastp of sequenced clone
CG12121 2003-01-01 Sim4 clustering to Release 3
CG12121 2008-04-29 Release 5.5 accounting
CG12121 2008-08-15 Release 5.9 accounting
CG12121 2008-12-18 5.12 accounting

Clone Sequence Records

RE59932.complete Sequence

2965 bp (2965 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113517

> RE59932.complete
GCTTATATCGAAGAACGATAGACTTCGATAGATCACCTTTTTTCCCCCAG
CAAAAAAGTAAAATTCTTTGGGGTTTTTATCAAGGTGAGGTGTGAATAAT
AGGAACTGTGACGGCGGTCGCGGCAAATCGATTGCCGCATCTTGGATCGC
AGCTAGCGCGGAACTCTGCGCCGGAACGTTCCGCCCGGAATCGCGGGGCA
AAAGTGCCACGAAACGTCGCCGAAGAATAGAAGCGGAAAATTTGGGGAAA
ATACGGAAAGATGTGGGCTCCCGGCGGGGATGTTAAATCAATAGTGGTGC
TGGCGGCACTGACGGCGCTTCTCTGGGCCCCACTTGAGGTCCTTGGGCGG
AAGCACCATCTGGAAGTGAGGAATGACCGTCGCCAGTACATCGCACTCAG
CACCTTTGGATTCTACACTAATGGCCATTTGGATGTGCAGCTCAGCAAAT
TGACTTTTGACAATGAGCAGTCTACAGATTTGATGGGTCTGTCGCTGGAT
AAGACCACTATTGACCAGCTTAATCCCTATTTGGACTCGCATCAAAACAA
ATGCATTCTCGAGGAATCACCTAAATCCCAGATCAGCGGACCCATTCTCT
TCTTCGTGCTGGACCTCAAGGAGCTTAAAGTTCGTGTTAAGTGCTCCCCC
GAATGGCACAATATGCACATCTACAACCAAATCCCGTCCAGAACCAAGCG
GCACTCACACATGGCCAAGGTCAGCGATTCGGTTCTGTTTCGCCAGACCC
GCGCTGCCCAAGATTTCTCCGCCGAGGGGCCAGATGAGTCCATGGAGGAT
CCCTTGGAGCAAGAACCGACGGATTTAAAGTCTTCCTCGCCTGCTGCGGT
TGCAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGCACCCAAGGTAGATG
CTCCTGCCCAAAATGTTGATGCTGTCAAAGAGGAGTCTGTTCCCAAGCCA
GAAGTGGCTGCCAATCAGAATATTTCTGACAAGCAGGAACTGCCTCCCCC
ACCAAATGCCGCCCCTAAAGTGGAGGAAGCCGTTAAGAGTGAACAGAAGC
AGGAGGAAGCCCCCGCTGAAAAGGATGAAACCCCTTCGAAAAAGGAGGAA
ACCCCAGCAAAGCAAGTATCCGTAGAAGAGCCAAAAGTCGCAGCCCCACC
ACTGGCCGTAAATAGCCCAGCAGCTGCTCCGTCCCTAGATGATACTGAAG
TTGACAAGAAAAATGAAGCCACCGATACGGACGCAGCTCCCGGAAACCCT
TTCCCCCACGAAGGCGATTCCGAAGAAGATTCATATGGACCCGACTCCTT
TAAGCAATCGCAAGAAAACCTTTGCAAGGATTCGACCATGCCGCTGGTCA
GGGAGACCATCAACAATGTACACTACTACAGCTTCAACTTCTCTATGATG
GTGGCCACGCCCAGTGATGAGGGCTTGTACAACCTTTACTTCCACGCCTG
TCCCAATTATCACACCTCAAAAATAATGTCCTTCAATGTGGACATCGAGG
AGAACAACAATGGCAACTATTTGTCGGCTGGAGAAATGCCCCTGCCAGCC
TTGTACTTCATGATGAGCCTGCTCTTCTTTCTCTCCGGCCTCTTTTGGGT
TTTCATTTTGAAGAAGAGCAAGCACACTGTGTACAAAATCCATTATTTGA
TGGCCGTGCTGGTGTTCCTCAAGTCCCTCTCGCTGATGTTCCATTCGATC
AACTATCACTTCATCGAAAAGCGGGGCGAGCATGTGGAGACCTGGGCCAT
CCTTTACTACATTGCCCACCTGCTGAAGGGCGCCGTGCTCTTCATCACCA
TCGTTTTGATTGGCACCGGCTGGACTTTTATTAAGCACATTCTCTCTGAC
AAGGACAAGAAGATTTTCATGATCGTAATTCCACTGCAGGTTCTGGCCAA
CGTGGCCCAGATCATTACGGACGAGTCTGATCAGAGCGACGCCGAGTTCC
GTACCTGGCACAACATCTTCTTCTTCGTGGATCTGCTGTGCTGCGGCGCC
ATTCTCTTTCCAATCGTATGGTCCATCCGACATCTACATGAGGCCTCTGC
GACAGATGGCAAGGCGGCGATCAATTTGCGCAAGTTGAAGCTGTTCCGTC
AGTTCTACATCATGATCGTGTGCTATATCTACTTCACGCGGATCATCGTC
GATCTGCTGCAGATGACGGTGGTGTTCCAATACGCCTGGCTAGACGAGAT
GTTCCGTGAGATGGCCACATACGTGTTCTTCGTGCTGACTGGCTACAAGT
TCCGTCCAGTATCCTCGCATCCATACTTCACCGTGCCGGACGAAGACGAG
GATGACGACGAGGTGGAGGTGCTTACCGAATCTGGTCTCACGGAGACGGT
GCACCGTGTGAAGCAGCTAAACCGAAACCACGGAAGCGGCTTGGGCGGAA
TCACCATCATCGAGGGCAACGATGATGAGCGCGAGAACCTGATTGCAAAG
CGGGAATCAAGCCATGAGTACGATTAGGCCCCATAATGGAAGCCAATTGA
TCTGCATCACCAATATTCCCTGCATTAGTCCGTAGTCTATAGTCCCCGGA
GTCTTGGATATAATGACTCAAATTCTGAGCTAGTACTTTACCATTACTTT
AATATATTTGTTTTATGTTCAGCGCATCTTAAGAGAAATCAATAAGAAAA
TCAAAAGCAAACGCGATGGCCATGGAGGGGATAATCTCAGCATATAAACT
TGTATAGGGCAACGTCGGCACAACGTTTGGTGGGCACCAACTGCTCCTCC
ACCACCTCCTCCAGTGCCCGTCCAGTCACCAGCCAAGGAACCCTTGTAAA
TAAATAATGAATCCGCTTAACGGAATACTGAACGCTTGTGACACCCAGGC
CCTATCCTTGGTTTAAGATATACATATACATATAAATAAATACACTTATG
TAATTACCTATAATTTTATGAATATAACAAAGCTTTAATATGTAAACCCA
AAAAAAAAAAAAAAA

RE59932.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12121-RA 2958 CG12121-RA 1..2951 1..2951 14725 99.9 Plus
Gr8a-RA 1558 Gr8a-RA 1521..1558 2951..2914 190 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9120628..9121690 2949..1887 5300 99.9 Minus
chrX 22417052 chrX 9122529..9123390 1490..629 4160 98.8 Minus
chrX 22417052 chrX 9123835..9124205 371..1 1840 99.7 Minus
chrX 22417052 chrX 9122009..9122282 1891..1618 1355 99.6 Minus
chrX 22417052 chrX 9123456..9123599 625..482 690 98.6 Minus
chrX 22417052 chrX 9122339..9122473 1622..1488 660 99.3 Minus
chrX 22417052 chrX 9123660..9123771 482..371 545 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:06:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9228794..9229858 2951..1887 5310 99.9 Minus
X 23542271 X 9230697..9231558 1490..629 4310 100 Minus
X 23542271 X 9232003..9232373 371..1 1840 99.7 Minus
X 23542271 X 9230177..9230450 1891..1618 1355 99.6 Minus
X 23542271 X 9231621..9231767 628..482 735 100 Minus
X 23542271 X 9230507..9230641 1622..1488 675 100 Minus
X 23542271 X 9231828..9231939 482..371 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9236892..9237956 2951..1887 5310 99.9 Minus
X 23527363 X 9238795..9239656 1490..629 4310 100 Minus
X 23527363 X 9240101..9240471 371..1 1840 99.7 Minus
X 23527363 X 9238275..9238548 1891..1618 1355 99.6 Minus
X 23527363 X 9239719..9239865 628..482 735 100 Minus
X 23527363 X 9238605..9238739 1622..1488 675 100 Minus
X 23527363 X 9239926..9240037 482..371 560 100 Minus
Blast to na_te.dros performed 2019-03-16 21:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 425..483 2868..2926 142 71.2 Plus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 384..477 2836..2926 138 63.8 Plus

RE59932.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:32 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9120628..9121687 1890..2949 99 <- Minus
chrX 9122011..9122278 1622..1889 100 <- Minus
chrX 9122340..9122473 1488..1621 99 <- Minus
chrX 9122532..9123390 629..1487 98 <- Minus
chrX 9123453..9123598 483..628 97 <- Minus
chrX 9123660..9123770 372..482 99 <- Minus
chrX 9123835..9124205 1..371 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:34 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2217 261..2477 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:27 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2217 261..2477 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:02 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2217 261..2477 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:29 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2217 261..2477 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:52 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2217 261..2477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:40 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2949 1..2949 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:27 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2949 1..2949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:02 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 6..2954 1..2949 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:29 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 1..2949 1..2949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:52 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
CG12121-RA 6..2954 1..2949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:32 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
X 9232003..9232373 1..371 99   Minus
X 9228796..9229855 1890..2949 99 <- Minus
X 9230179..9230446 1622..1889 100 <- Minus
X 9230508..9230641 1488..1621 100 <- Minus
X 9230700..9231558 629..1487 100 <- Minus
X 9231621..9231766 483..628 100 <- Minus
X 9231828..9231938 372..482 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:32 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
X 9232003..9232373 1..371 99   Minus
X 9228796..9229855 1890..2949 99 <- Minus
X 9230179..9230446 1622..1889 100 <- Minus
X 9230508..9230641 1488..1621 100 <- Minus
X 9230700..9231558 629..1487 100 <- Minus
X 9231621..9231766 483..628 100 <- Minus
X 9231828..9231938 372..482 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:32 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
X 9232003..9232373 1..371 99   Minus
X 9228796..9229855 1890..2949 99 <- Minus
X 9230179..9230446 1622..1889 100 <- Minus
X 9230508..9230641 1488..1621 100 <- Minus
X 9230700..9231558 629..1487 100 <- Minus
X 9231621..9231766 483..628 100 <- Minus
X 9231828..9231938 372..482 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:02 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9124212..9124479 1622..1889 100 <- Minus
arm_X 9124541..9124674 1488..1621 100 <- Minus
arm_X 9122829..9123888 1890..2949 99 <- Minus
arm_X 9124733..9125591 629..1487 100 <- Minus
arm_X 9125654..9125799 483..628 100 <- Minus
arm_X 9125861..9125971 372..482 100 <- Minus
arm_X 9126036..9126406 1..371 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:36 Download gff for RE59932.complete
Subject Subject Range Query Range Percent Splice Strand
X 9239719..9239864 483..628 100 <- Minus
X 9239926..9240036 372..482 100 <- Minus
X 9240101..9240471 1..371 99   Minus
X 9236894..9237953 1890..2949 99 <- Minus
X 9238277..9238544 1622..1889 100 <- Minus
X 9238606..9238739 1488..1621 100 <- Minus
X 9238798..9239656 629..1487 100 <- Minus

RE59932.pep Sequence

Translation from 260 to 2476

> RE59932.pep
MWAPGGDVKSIVVLAALTALLWAPLEVLGRKHHLEVRNDRRQYIALSTFG
FYTNGHLDVQLSKLTFDNEQSTDLMGLSLDKTTIDQLNPYLDSHQNKCIL
EESPKSQISGPILFFVLDLKELKVRVKCSPEWHNMHIYNQIPSRTKRHSH
MAKVSDSVLFRQTRAAQDFSAEGPDESMEDPLEQEPTDLKSSSPAAVAGK
IELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNA
APKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAV
NSPAAAPSLDDTEVDKKNEATDTDAAPGNPFPHEGDSEEDSYGPDSFKQS
QENLCKDSTMPLVRETINNVHYYSFNFSMMVATPSDEGLYNLYFHACPNY
HTSKIMSFNVDIEENNNGNYLSAGEMPLPALYFMMSLLFFLSGLFWVFIL
KKSKHTVYKIHYLMAVLVFLKSLSLMFHSINYHFIEKRGEHVETWAILYY
IAHLLKGAVLFITIVLIGTGWTFIKHILSDKDKKIFMIVIPLQVLANVAQ
IITDESDQSDAEFRTWHNIFFFVDLLCCGAILFPIVWSIRHLHEASATDG
KAAINLRKLKLFRQFYIMIVCYIYFTRIIVDLLQMTVVFQYAWLDEMFRE
MATYVFFVLTGYKFRPVSSHPYFTVPDEDEDDDEVEVLTESGLTETVHRV
KQLNRNHGSGLGGITIIEGNDDERENLIAKRESSHEYD*

RE59932.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19098-PA 612 GF19098-PA 25..539 24..523 1480 61.5 Plus
Dana\GF19098-PA 612 GF19098-PA 509..612 634..738 444 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18990-PA 748 GG18990-PA 1..748 1..738 3610 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12704-PA 693 GH12704-PA 11..693 7..738 2475 69 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12121-PA 738 CG12121-PA 1..738 1..738 3863 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14468-PA 319 GI14468-PA 1..319 419..738 1504 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18285-PA 772 GL18285-PA 18..772 7..738 2622 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28126-PA 772 GA28126-PA 18..772 7..738 2614 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22360-PA 776 GM22360-PA 218..776 179..738 2929 97.5 Plus
Dsec\GM22360-PA 776 GM22360-PA 1..85 1..85 440 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16074-PA 692 GD16074-PA 1..692 1..738 3581 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18803-PA 728 GJ18803-PA 11..728 7..738 2508 68.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25796-PA 674 GK25796-PA 7..674 3..738 2488 70.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15463-PA 735 GE15463-PA 1..735 1..738 3594 92.8 Plus

RE59932.hyp Sequence

Translation from 260 to 2476

> RE59932.hyp
MWAPGGDVKSIVVLAALTALLWAPLEVLGRKHHLEVRNDRRQYIALSTFG
FYTNGHLDVQLSKLTFDNEQSTDLMGLSLDKTTIDQLNPYLDSHQNKCIL
EESPKSQISGPILFFVLDLKELKVRVKCSPEWHNMHIYNQIPSRTKRHSH
MAKVSDSVLFRQTRAAQDFSAEGPDESMEDPLEQEPTDLKSSSPAAVAGK
IELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNA
APKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAV
NSPAAAPSLDDTEVDKKNEATDTDAAPGNPFPHEGDSEEDSYGPDSFKQS
QENLCKDSTMPLVRETINNVHYYSFNFSMMVATPSDEGLYNLYFHACPNY
HTSKIMSFNVDIEENNNGNYLSAGEMPLPALYFMMSLLFFLSGLFWVFIL
KKSKHTVYKIHYLMAVLVFLKSLSLMFHSINYHFIEKRGEHVETWAILYY
IAHLLKGAVLFITIVLIGTGWTFIKHILSDKDKKIFMIVIPLQVLANVAQ
IITDESDQSDAEFRTWHNIFFFVDLLCCGAILFPIVWSIRHLHEASATDG
KAAINLRKLKLFRQFYIMIVCYIYFTRIIVDLLQMTVVFQYAWLDEMFRE
MATYVFFVLTGYKFRPVSSHPYFTVPDEDEDDDEVEVLTESGLTETVHRV
KQLNRNHGSGLGGITIIEGNDDERENLIAKRESSHEYD*

RE59932.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12121-PA 738 CG12121-PA 1..738 1..738 3863 100 Plus