Clone RE59992 Report

Search the DGRC for RE59992

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:599
Well:92
Vector:pFlc-1
Associated Gene/TranscriptIntS10-RA
Protein status:RE59992.pep: gold
Preliminary Size:1955
Sequenced Size:2282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1120 2002-01-01 Sim4 clustering to Release 2
CG1120 2003-01-01 Sim4 clustering to Release 3
CG1120 2004-09-29 Blastp of sequenced clone
CG1120 2008-04-29 Release 5.5 accounting
CG1120 2008-08-15 Release 5.9 accounting
CG1120 2008-12-18 5.12 accounting

Clone Sequence Records

RE59992.complete Sequence

2282 bp (2282 high quality bases) assembled on 2004-09-29

GenBank Submission: BT015983

> RE59992.complete
AGTGCTAGTAAATAAATTCCTAATAGCCGGCTAAATGGTTTGTTTTTGTT
GAAACTAGGAGAAAATTAATAAAAACAAAAGATATACCCGAAGAAACATG
CCGAGCCAAGAGGAAAATGAGTTGTACATGGTCAAGGAGGCGCAAAGACT
CCGGAAAAGCGATCCTTGCGCGGCCATGGCCTGGATTATCACAGCTAAAA
CTTTATATCCCAATGCATTCAACCTGCAATACGAGGCTTATCTACTGGAA
CGCGATGCTCAGAATTATGAGGAGGCAGCAAAGTGTTTCAGTGCTATAGC
CACCAATTTCCAGAATCAACATACGGAGCTGTGGCAGGAGATCAACTCCC
TAACAAATGCCCTCAGAAATGAGAATGAAACTACGCCGGAACACGAGTTC
TATGTAAAAATGTACAAGCACCTAACTCCGGAAGTACAGCACAACATATT
CATGCACACCATCAACCACAGTGCCGATAATCTGGAGCGCATCTATATCT
ACATACTGATGTTCAACAAGTTTCCCAAATCAGCCATAACTCAGGCTCCC
AGGCTACTGGAAATGCTGGCGGAGGGCATGAAAACCGAACCGGATCTCTA
TCAGCGGATTCTGGTGGAGGAGGTATTGCCCATGATCCAGAATAAGCCCC
CGGAACTTTCGCCAAATCTGGCCTGCAGACTTTATACCAGTTCCTTGGAG
TTTTATTTGCGGCAAATAATGGATGAATCGGATACAGCAGATGCCTGGAA
GAACATCTTTAAAGTGCTGATGATCTGCGGTCAGATGATGGGCTGGGAGC
CCTTCCTGCCCTTCAGCAAGCATGTCAACCAGAACGTCTACTGGGAAAAG
CTGGTGGACATACTTTCCGGCAGTCCTGCGGGCAGCTCCCAGGTTTTGTT
CTACGCCACCACCTTGTTCATTTACTCCCTTCATGGTTATATACGAAATT
GTAAGCTGAGGATCGAGGATGCCGATGTAACTCATGTTTTGGTAGAAGGA
TTCATGGAATGGTCGCCGGAAGGTGATGGCTCCGAAGTGCCCAGCATGGA
GCCACCGAAATTCTCCCTGACCACGGCCATAAGTCCAGAGTTATCCAAGG
CCTTCCTACACGCCGCCCAGTGCTGGCAGCTGCTCAATACGGATCAGTTC
CAAAGGGATTTCAGTCAACTTATGCTGGCTCTTCCCTTGGCGCCTTGGAT
CTCAAGATTCCTCTTCGACTTGGCCATATATTTCGGACACCGGGATGAGG
CCAACAAGCTTATGGCGGACATGACCACCCAGAGCAGTCTGGTGCAAAGC
CTGCAGATCTTGAGCCTTAATCTAATGCAAGGCAGCATGACGCTCCAGGG
CTTCCAGTGCATTTTAAAGATCCTGTCAGAACTCCCCACCACCCAGGGTC
AACTTTTGGAGAATATGTCGCTGAAGGGCCACAGGCACATGGTTTTTCTG
CCCCTCACTCGATCAGCGTTGGTTCAGTACTGCGTGGGAGCCATCATCAG
CAGACTGAGTCGCAAGGTCTTCGAACCGAACGTTCCAGATCGATTGCTAG
GGGATATCCTAGTGCTGCAGCAACTTAATCTACTCAACGATGTTCTGCTC
ACTCAACAGATATTTAACCTGATCAAGCAACGGAAATCGTTCAATCTGCG
CACCCTATCCACCTACATTATTAATATCGATTTGCTCGAGGAACTCTCGC
ACATTTGGAACTCCCAGCAGGAGGATAACTTTGAGTTGACCAGCTCGCCA
AATTCGAGTGGCACACCTACTGCGACCACTGTAGCTGGTGGTTCCCAAAG
CCGAAGAATTGGCACCCGTGGAGCGGACAAAGGAGCCCGAGATGAATTCA
GGGCGATAACACGCCAGCAGATTGCCCGCTGCAATGAGAACGTGATCACT
TTGCTTGCGAATTTCATTAACCAAGAACACTTGATGCTGGCGCAGCACAT
CTTTGGAATCAGTCAGCCCGTGGAGACGATTGTGATTAAGTGAAATAACT
AGGAGGTAACATTTATAAAATATCTATTTTCCAGCTATCTTACACATTGT
GTGTTTGGTTAATACATACGACTATTATATTTAAGTTCACCAGTCTAGAC
TGGTGTATTTCGCTTATCGAATAAACAAATATTTATTTTATCAGCTGATA
ACATAGTTAGAGGTTGCATTTGATATGTTTCGATTTAGTCATACGCATAA
TTTAAAACTTCATGTAGTTTTAATTTAATTTGGGTATAATAAATATAATT
GATCGACTAACAATAACAAAAAAAAAAAAAAA

RE59992.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1120-RA 2315 CG1120-RA 49..2315 1..2267 11335 100 Plus
CG1120.a 2243 CG1120.a 69..2243 93..2267 10875 100 Plus
CG1120.a 2243 CG1120.a 33..69 1..37 185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3806502..3807546 298..1342 5105 99.2 Plus
chr3L 24539361 chr3L 3807602..3808528 1342..2267 4315 98 Plus
chr3L 24539361 chr3L 3806152..3806448 1..297 1470 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3807065..3808109 298..1342 5225 100 Plus
3L 28110227 3L 3808165..3809090 1342..2267 4630 100 Plus
3L 28110227 3L 3806715..3807011 1..297 1485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3807065..3808109 298..1342 5225 100 Plus
3L 28103327 3L 3808165..3809090 1342..2267 4630 100 Plus
3L 28103327 3L 3806715..3807011 1..297 1485 100 Plus
Blast to na_te.dros performed 2019-03-15 16:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 918..1026 2237..2130 128 61.3 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 917..1039 2237..2119 127 60.5 Minus

RE59992.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:33:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3806152..3806448 1..297 99 -> Plus
chr3L 3806502..3807546 298..1342 99 -> Plus
chr3L 3807603..3808528 1343..2267 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:36 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 1..1896 98..1993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:04 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 1..1896 98..1993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:04:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 1..1896 98..1993 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:53 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 1..1896 98..1993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:58 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 1..1896 98..1993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:06 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 2..2268 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:04 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 2..2268 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 6..2272 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:54 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 2..2268 1..2267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:58 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 6..2272 1..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3806715..3807011 1..297 100 -> Plus
3L 3807065..3808109 298..1342 100 -> Plus
3L 3808166..3809090 1343..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3806715..3807011 1..297 100 -> Plus
3L 3807065..3808109 298..1342 100 -> Plus
3L 3808166..3809090 1343..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3806715..3807011 1..297 100 -> Plus
3L 3807065..3808109 298..1342 100 -> Plus
3L 3808166..3809090 1343..2267 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:59 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3806715..3807011 1..297 100 -> Plus
arm_3L 3807065..3808109 298..1342 100 -> Plus
arm_3L 3808166..3809090 1343..2267 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:51 Download gff for RE59992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3806715..3807011 1..297 100 -> Plus
3L 3807065..3808109 298..1342 100 -> Plus
3L 3808166..3809090 1343..2267 100   Plus

RE59992.pep Sequence

Translation from 97 to 1992

> RE59992.pep
MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL
ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE
FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA
PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL
EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE
KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE
GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ
FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ
SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF
LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL
LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS
PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI
TLLANFINQEHLMLAQHIFGISQPVETIVIK*

RE59992.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24223-PA 635 GF24223-PA 1..635 1..631 2875 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15157-PA 630 GG15157-PA 1..630 1..630 3284 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16426-PA 648 GH16426-PA 1..648 1..631 2646 78.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-PA 631 CG1120-PA 1..631 1..631 3266 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12508-PA 647 GI12508-PA 1..647 1..631 2575 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21003-PA 631 GL21003-PA 1..631 1..631 2730 82 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10834-PA 631 GA10834-PA 1..631 1..631 2736 82.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14586-PA 631 GM14586-PA 1..631 1..631 3347 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13779-PA 555 GD13779-PA 1..67 1..67 351 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12414-PA 647 GJ12414-PA 1..647 1..631 2543 76.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20523-PA 637 GK20523-PA 2..637 3..631 2653 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21378-PA 631 GE21378-PA 1..631 1..631 3307 96.8 Plus

RE59992.hyp Sequence

Translation from 97 to 1992

> RE59992.hyp
MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL
ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE
FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA
PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL
EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE
KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE
GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ
FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ
SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF
LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL
LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS
PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI
TLLANFINQEHLMLAQHIFGISQPVETIVIK*

RE59992.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-PA 631 CG1120-PA 1..631 1..631 3266 100 Plus