BDGP Sequence Production Resources |
Search the DGRC for RE59992
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 599 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | IntS10-RA |
Protein status: | RE59992.pep: gold |
Preliminary Size: | 1955 |
Sequenced Size: | 2282 |
Gene | Date | Evidence |
---|---|---|
CG1120 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1120 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1120 | 2004-09-29 | Blastp of sequenced clone |
CG1120 | 2008-04-29 | Release 5.5 accounting |
CG1120 | 2008-08-15 | Release 5.9 accounting |
CG1120 | 2008-12-18 | 5.12 accounting |
2282 bp (2282 high quality bases) assembled on 2004-09-29
GenBank Submission: BT015983
> RE59992.complete AGTGCTAGTAAATAAATTCCTAATAGCCGGCTAAATGGTTTGTTTTTGTT GAAACTAGGAGAAAATTAATAAAAACAAAAGATATACCCGAAGAAACATG CCGAGCCAAGAGGAAAATGAGTTGTACATGGTCAAGGAGGCGCAAAGACT CCGGAAAAGCGATCCTTGCGCGGCCATGGCCTGGATTATCACAGCTAAAA CTTTATATCCCAATGCATTCAACCTGCAATACGAGGCTTATCTACTGGAA CGCGATGCTCAGAATTATGAGGAGGCAGCAAAGTGTTTCAGTGCTATAGC CACCAATTTCCAGAATCAACATACGGAGCTGTGGCAGGAGATCAACTCCC TAACAAATGCCCTCAGAAATGAGAATGAAACTACGCCGGAACACGAGTTC TATGTAAAAATGTACAAGCACCTAACTCCGGAAGTACAGCACAACATATT CATGCACACCATCAACCACAGTGCCGATAATCTGGAGCGCATCTATATCT ACATACTGATGTTCAACAAGTTTCCCAAATCAGCCATAACTCAGGCTCCC AGGCTACTGGAAATGCTGGCGGAGGGCATGAAAACCGAACCGGATCTCTA TCAGCGGATTCTGGTGGAGGAGGTATTGCCCATGATCCAGAATAAGCCCC CGGAACTTTCGCCAAATCTGGCCTGCAGACTTTATACCAGTTCCTTGGAG TTTTATTTGCGGCAAATAATGGATGAATCGGATACAGCAGATGCCTGGAA GAACATCTTTAAAGTGCTGATGATCTGCGGTCAGATGATGGGCTGGGAGC CCTTCCTGCCCTTCAGCAAGCATGTCAACCAGAACGTCTACTGGGAAAAG CTGGTGGACATACTTTCCGGCAGTCCTGCGGGCAGCTCCCAGGTTTTGTT CTACGCCACCACCTTGTTCATTTACTCCCTTCATGGTTATATACGAAATT GTAAGCTGAGGATCGAGGATGCCGATGTAACTCATGTTTTGGTAGAAGGA TTCATGGAATGGTCGCCGGAAGGTGATGGCTCCGAAGTGCCCAGCATGGA GCCACCGAAATTCTCCCTGACCACGGCCATAAGTCCAGAGTTATCCAAGG CCTTCCTACACGCCGCCCAGTGCTGGCAGCTGCTCAATACGGATCAGTTC CAAAGGGATTTCAGTCAACTTATGCTGGCTCTTCCCTTGGCGCCTTGGAT CTCAAGATTCCTCTTCGACTTGGCCATATATTTCGGACACCGGGATGAGG CCAACAAGCTTATGGCGGACATGACCACCCAGAGCAGTCTGGTGCAAAGC CTGCAGATCTTGAGCCTTAATCTAATGCAAGGCAGCATGACGCTCCAGGG CTTCCAGTGCATTTTAAAGATCCTGTCAGAACTCCCCACCACCCAGGGTC AACTTTTGGAGAATATGTCGCTGAAGGGCCACAGGCACATGGTTTTTCTG CCCCTCACTCGATCAGCGTTGGTTCAGTACTGCGTGGGAGCCATCATCAG CAGACTGAGTCGCAAGGTCTTCGAACCGAACGTTCCAGATCGATTGCTAG GGGATATCCTAGTGCTGCAGCAACTTAATCTACTCAACGATGTTCTGCTC ACTCAACAGATATTTAACCTGATCAAGCAACGGAAATCGTTCAATCTGCG CACCCTATCCACCTACATTATTAATATCGATTTGCTCGAGGAACTCTCGC ACATTTGGAACTCCCAGCAGGAGGATAACTTTGAGTTGACCAGCTCGCCA AATTCGAGTGGCACACCTACTGCGACCACTGTAGCTGGTGGTTCCCAAAG CCGAAGAATTGGCACCCGTGGAGCGGACAAAGGAGCCCGAGATGAATTCA GGGCGATAACACGCCAGCAGATTGCCCGCTGCAATGAGAACGTGATCACT TTGCTTGCGAATTTCATTAACCAAGAACACTTGATGCTGGCGCAGCACAT CTTTGGAATCAGTCAGCCCGTGGAGACGATTGTGATTAAGTGAAATAACT AGGAGGTAACATTTATAAAATATCTATTTTCCAGCTATCTTACACATTGT GTGTTTGGTTAATACATACGACTATTATATTTAAGTTCACCAGTCTAGAC TGGTGTATTTCGCTTATCGAATAAACAAATATTTATTTTATCAGCTGATA ACATAGTTAGAGGTTGCATTTGATATGTTTCGATTTAGTCATACGCATAA TTTAAAACTTCATGTAGTTTTAATTTAATTTGGGTATAATAAATATAATT GATCGACTAACAATAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 3806502..3807546 | 298..1342 | 5105 | 99.2 | Plus |
chr3L | 24539361 | chr3L | 3807602..3808528 | 1342..2267 | 4315 | 98 | Plus |
chr3L | 24539361 | chr3L | 3806152..3806448 | 1..297 | 1470 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 3807065..3808109 | 298..1342 | 5225 | 100 | Plus |
3L | 28103327 | 3L | 3808165..3809090 | 1342..2267 | 4630 | 100 | Plus |
3L | 28103327 | 3L | 3806715..3807011 | 1..297 | 1485 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3806152..3806448 | 1..297 | 99 | -> | Plus |
chr3L | 3806502..3807546 | 298..1342 | 99 | -> | Plus |
chr3L | 3807603..3808528 | 1343..2267 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 1..1896 | 98..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 1..1896 | 98..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS10-RA | 1..1896 | 98..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 1..1896 | 98..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS10-RA | 1..1896 | 98..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 2..2268 | 1..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 2..2268 | 1..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS10-RA | 6..2272 | 1..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1120-RA | 2..2268 | 1..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS10-RA | 6..2272 | 1..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3806715..3807011 | 1..297 | 100 | -> | Plus |
3L | 3807065..3808109 | 298..1342 | 100 | -> | Plus |
3L | 3808166..3809090 | 1343..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3806715..3807011 | 1..297 | 100 | -> | Plus |
3L | 3807065..3808109 | 298..1342 | 100 | -> | Plus |
3L | 3808166..3809090 | 1343..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3806715..3807011 | 1..297 | 100 | -> | Plus |
3L | 3807065..3808109 | 298..1342 | 100 | -> | Plus |
3L | 3808166..3809090 | 1343..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3806715..3807011 | 1..297 | 100 | -> | Plus |
arm_3L | 3807065..3808109 | 298..1342 | 100 | -> | Plus |
arm_3L | 3808166..3809090 | 1343..2267 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3806715..3807011 | 1..297 | 100 | -> | Plus |
3L | 3807065..3808109 | 298..1342 | 100 | -> | Plus |
3L | 3808166..3809090 | 1343..2267 | 100 | Plus |
Translation from 97 to 1992
> RE59992.pep MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI TLLANFINQEHLMLAQHIFGISQPVETIVIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24223-PA | 635 | GF24223-PA | 1..635 | 1..631 | 2875 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15157-PA | 630 | GG15157-PA | 1..630 | 1..630 | 3284 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16426-PA | 648 | GH16426-PA | 1..648 | 1..631 | 2646 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
IntS10-PA | 631 | CG1120-PA | 1..631 | 1..631 | 3266 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12508-PA | 647 | GI12508-PA | 1..647 | 1..631 | 2575 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21003-PA | 631 | GL21003-PA | 1..631 | 1..631 | 2730 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10834-PA | 631 | GA10834-PA | 1..631 | 1..631 | 2736 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14586-PA | 631 | GM14586-PA | 1..631 | 1..631 | 3347 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13779-PA | 555 | GD13779-PA | 1..67 | 1..67 | 351 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12414-PA | 647 | GJ12414-PA | 1..647 | 1..631 | 2543 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20523-PA | 637 | GK20523-PA | 2..637 | 3..631 | 2653 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21378-PA | 631 | GE21378-PA | 1..631 | 1..631 | 3307 | 96.8 | Plus |
Translation from 97 to 1992
> RE59992.hyp MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI TLLANFINQEHLMLAQHIFGISQPVETIVIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
IntS10-PA | 631 | CG1120-PA | 1..631 | 1..631 | 3266 | 100 | Plus |