Clone RE60063 Report

Search the DGRC for RE60063

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:600
Well:63
Vector:pFlc-1
Associated Gene/TranscriptCG17883-RA
Protein status:RE60063.pep: gold
Preliminary Size:2642
Sequenced Size:1637

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17883 2002-01-01 Sim4 clustering to Release 2
CG40289 2002-04-26 Blastp of sequenced clone
CG17883 2008-04-29 Release 5.5 accounting
CG17883 2008-08-15 Release 5.9 accounting
CG17883 2008-12-18 5.12 accounting

Clone Sequence Records

RE60063.complete Sequence

1637 bp (1637 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113520

> RE60063.complete
GGATTCGATATTTACTAGAAATTCAACATTGATGTTTCTTTAAATCTTGT
GTTTCAGCAAATATTAGGGTTTTATTGTAGACGCTAAAATACATCTTTAA
GATATTGGCTATTTTGTGAATAGTCTCAGTTTCGTGCATTGGGAAGCCTT
TTTAAGAAATATCACGTTTTATTTGGATTTAAAATGAAAACATTGAGTGA
TTATAATAGCAAAAATAAATTGTGCTGACGTGCAAACACAAAGCATTTCA
GCTCAAGCGTTCCGACAGCCTCCATTTTGACCGAAATAACATAATTCTTA
ATTGTTTTCTTATATTGAGCAATATGATCAAAAATGAACAACGTCCCCTT
AATTTTGAAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGA
GATAGAAAAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATG
TACTTGTGAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTT
AGAAGGATTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGG
ACAAGCTCCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAG
TGGTGTTAGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCG
TACGAGCAACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCG
AGTAATTCAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACG
TGGCTGTAACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATA
ATGGAACAGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTAT
GGAGGCCACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTG
AAAACCCAGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTG
TTCTCTTTGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTA
TAGAACCGTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATA
CATCAATCTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATT
CTAAAGGAGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGAT
ACCAGAAGATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTT
TAAATAAATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATT
TGTCAAGAAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAG
ACGTCAACCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTC
CAAATATTTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATT
GTAGTGGGTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGG
TATAAGCTGATTATAAAAGTAACTGAGTATATCGACATTTAAATTTGTTC
CTTATACCGCGGTATAATCACATTCTCCCGAAATTCTGTGTTTTGGTGAA
GACCTTATTTTAATACATTGTACAATTCTACTGTCACCAAATACTTGAAA
TATATATATATATATATCTTTAAAAAAAAAAAAAAAA

RE60063.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1744 CG17883-RA 5..1625 2..1622 8105 100 Plus
CG17883.b 2297 CG17883.b 5..1625 2..1622 8105 100 Plus
CG17883-RB 1677 CG17883-RB 2..1148 2..1148 5735 100 Plus
CG17883-RB 1677 CG17883-RB 1199..1677 1148..1622 2310 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 559873..560657 364..1148 3925 100 Plus
chr2R 21145070 chr2R 560872..561234 1259..1621 1815 100 Plus
chr2R 21145070 chr2R 559453..559816 2..365 1790 99.5 Plus
chr2R 21145070 chr2R 560708..560818 1148..1258 555 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672278..4673062 364..1148 3925 100 Plus
2R 25286936 2R 4673277..4673640 1259..1622 1820 100 Plus
2R 25286936 2R 4671858..4672221 2..365 1820 100 Plus
2R 25286936 2R 4673113..4673223 1148..1258 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4673477..4674261 364..1148 3925 100 Plus
2R 25260384 2R 4674476..4674839 1259..1622 1820 100 Plus
2R 25260384 2R 4673057..4673420 2..365 1820 100 Plus
2R 25260384 2R 4674312..4674422 1148..1258 555 100 Plus
2R 25260384 2R 3065408..3065456 315..363 170 89.7 Plus
2R 25260384 2R 3065557..3065609 1281..1333 145 84.9 Plus
Blast to na_te.dros performed on 2019-03-16 02:49:17 has no hits.

RE60063.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:20 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 559452..559814 1..363 99 -> Plus
chr2R 559873..560657 364..1148 100 -> Plus
chr2R 560709..560818 1149..1258 100 -> Plus
chr2R 560872..561234 1259..1621 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:40 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 324..1460 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:30 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 324..1460 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:23:09 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 324..1460 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:43 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 324..1460 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:10 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 324..1460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:44 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 2..1621 2..1621 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:30 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 2..1621 2..1621 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:09 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 5..1625 1..1621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:44 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 2..1621 2..1621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:10 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 5..1625 1..1621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:20 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4673114..4673223 1149..1258 100 -> Plus
2R 4671857..4672219 1..363 99 -> Plus
2R 4672278..4673062 364..1148 100 -> Plus
2R 4673277..4673639 1259..1621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:20 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4673114..4673223 1149..1258 100 -> Plus
2R 4671857..4672219 1..363 99 -> Plus
2R 4672278..4673062 364..1148 100 -> Plus
2R 4673277..4673639 1259..1621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:20 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4673114..4673223 1149..1258 100 -> Plus
2R 4671857..4672219 1..363 99 -> Plus
2R 4672278..4673062 364..1148 100 -> Plus
2R 4673277..4673639 1259..1621 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:09 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 560782..561144 1259..1621 100   Plus
arm_2R 559362..559724 1..363 99 -> Plus
arm_2R 559783..560567 364..1148 100 -> Plus
arm_2R 560619..560728 1149..1258 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:39 Download gff for RE60063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4674313..4674422 1149..1258 100 -> Plus
2R 4673056..4673418 1..363 99 -> Plus
2R 4673477..4674261 364..1148 100 -> Plus
2R 4674476..4674838 1259..1621 100   Plus

RE60063.pep Sequence

Translation from 323 to 1459

> RE60063.pep
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGIS*

RE60063.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10918-PA 381 GG10918-PA 4..381 1..378 1804 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13565-PA 385 GH13565-PA 7..385 2..378 1469 71.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 378 CG17883-PA 1..378 1..378 1959 100 Plus
CG17883-PC 376 CG17883-PC 1..376 1..378 1926 99.5 Plus
CG17883-PD 371 CG17883-PD 1..371 1..378 1904 98.1 Plus
CG17883-PB 282 CG17883-PB 1..282 1..282 1447 97.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19543-PA 383 GI19543-PA 7..383 2..378 1478 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21153-PA 379 GL21153-PA 11..379 14..378 1507 75.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25512-PA 387 GA25512-PA 7..387 2..378 1524 74.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13620-PA 377 GM13620-PA 1..377 1..378 1906 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21577-PA 377 GD21577-PA 1..377 1..378 1921 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22046-PA 382 GJ22046-PA 8..382 3..378 1483 74.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23394-PA 391 GK23394-PA 12..391 4..378 1417 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19844-PA 380 GE19844-PA 4..380 2..378 1853 91.5 Plus

RE60063.hyp Sequence

Translation from 323 to 1459

> RE60063.hyp
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGIS*

RE60063.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 378 CG17883-PA 1..378 1..378 1959 100 Plus
CG17883-PC 376 CG17883-PC 1..376 1..378 1926 99.5 Plus
CG17883-PD 371 CG17883-PD 1..371 1..378 1904 98.1 Plus
CG17883-PB 282 CG17883-PB 1..282 1..282 1447 97.9 Plus