BDGP Sequence Production Resources |
Search the DGRC for RE60063
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 600 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17883-RA |
Protein status: | RE60063.pep: gold |
Preliminary Size: | 2642 |
Sequenced Size: | 1637 |
Gene | Date | Evidence |
---|---|---|
CG17883 | 2002-01-01 | Sim4 clustering to Release 2 |
CG40289 | 2002-04-26 | Blastp of sequenced clone |
CG17883 | 2008-04-29 | Release 5.5 accounting |
CG17883 | 2008-08-15 | Release 5.9 accounting |
CG17883 | 2008-12-18 | 5.12 accounting |
1637 bp (1637 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113520
> RE60063.complete GGATTCGATATTTACTAGAAATTCAACATTGATGTTTCTTTAAATCTTGT GTTTCAGCAAATATTAGGGTTTTATTGTAGACGCTAAAATACATCTTTAA GATATTGGCTATTTTGTGAATAGTCTCAGTTTCGTGCATTGGGAAGCCTT TTTAAGAAATATCACGTTTTATTTGGATTTAAAATGAAAACATTGAGTGA TTATAATAGCAAAAATAAATTGTGCTGACGTGCAAACACAAAGCATTTCA GCTCAAGCGTTCCGACAGCCTCCATTTTGACCGAAATAACATAATTCTTA ATTGTTTTCTTATATTGAGCAATATGATCAAAAATGAACAACGTCCCCTT AATTTTGAAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGA GATAGAAAAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATG TACTTGTGAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTT AGAAGGATTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGG ACAAGCTCCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAG TGGTGTTAGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCG TACGAGCAACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCG AGTAATTCAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACG TGGCTGTAACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATA ATGGAACAGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTAT GGAGGCCACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTG AAAACCCAGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTG TTCTCTTTGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTA TAGAACCGTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATA CATCAATCTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATT CTAAAGGAGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGAT ACCAGAAGATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTT TAAATAAATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATT TGTCAAGAAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAG ACGTCAACCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTC CAAATATTTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATT GTAGTGGGTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGG TATAAGCTGATTATAAAAGTAACTGAGTATATCGACATTTAAATTTGTTC CTTATACCGCGGTATAATCACATTCTCCCGAAATTCTGTGTTTTGGTGAA GACCTTATTTTAATACATTGTACAATTCTACTGTCACCAAATACTTGAAA TATATATATATATATATCTTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17883-RA | 1744 | CG17883-RA | 5..1625 | 2..1622 | 8105 | 100 | Plus |
CG17883.b | 2297 | CG17883.b | 5..1625 | 2..1622 | 8105 | 100 | Plus |
CG17883-RB | 1677 | CG17883-RB | 2..1148 | 2..1148 | 5735 | 100 | Plus |
CG17883-RB | 1677 | CG17883-RB | 1199..1677 | 1148..1622 | 2310 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 559873..560657 | 364..1148 | 3925 | 100 | Plus |
chr2R | 21145070 | chr2R | 560872..561234 | 1259..1621 | 1815 | 100 | Plus |
chr2R | 21145070 | chr2R | 559453..559816 | 2..365 | 1790 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 560708..560818 | 1148..1258 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 4672278..4673062 | 364..1148 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 4673277..4673640 | 1259..1622 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 4671858..4672221 | 2..365 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 4673113..4673223 | 1148..1258 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 4673477..4674261 | 364..1148 | 3925 | 100 | Plus |
2R | 25260384 | 2R | 4674476..4674839 | 1259..1622 | 1820 | 100 | Plus |
2R | 25260384 | 2R | 4673057..4673420 | 2..365 | 1820 | 100 | Plus |
2R | 25260384 | 2R | 4674312..4674422 | 1148..1258 | 555 | 100 | Plus |
2R | 25260384 | 2R | 3065408..3065456 | 315..363 | 170 | 89.7 | Plus |
2R | 25260384 | 2R | 3065557..3065609 | 1281..1333 | 145 | 84.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 559452..559814 | 1..363 | 99 | -> | Plus |
chr2R | 559873..560657 | 364..1148 | 100 | -> | Plus |
chr2R | 560709..560818 | 1149..1258 | 100 | -> | Plus |
chr2R | 560872..561234 | 1259..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 1..1137 | 324..1460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 1..1137 | 324..1460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 1..1137 | 324..1460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 1..1137 | 324..1460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 1..1137 | 324..1460 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 2..1621 | 2..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 2..1621 | 2..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 5..1625 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 2..1621 | 2..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17883-RA | 5..1625 | 1..1621 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4673114..4673223 | 1149..1258 | 100 | -> | Plus |
2R | 4671857..4672219 | 1..363 | 99 | -> | Plus |
2R | 4672278..4673062 | 364..1148 | 100 | -> | Plus |
2R | 4673277..4673639 | 1259..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4673114..4673223 | 1149..1258 | 100 | -> | Plus |
2R | 4671857..4672219 | 1..363 | 99 | -> | Plus |
2R | 4672278..4673062 | 364..1148 | 100 | -> | Plus |
2R | 4673277..4673639 | 1259..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4673114..4673223 | 1149..1258 | 100 | -> | Plus |
2R | 4671857..4672219 | 1..363 | 99 | -> | Plus |
2R | 4672278..4673062 | 364..1148 | 100 | -> | Plus |
2R | 4673277..4673639 | 1259..1621 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 560782..561144 | 1259..1621 | 100 | Plus | |
arm_2R | 559362..559724 | 1..363 | 99 | -> | Plus |
arm_2R | 559783..560567 | 364..1148 | 100 | -> | Plus |
arm_2R | 560619..560728 | 1149..1258 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4674313..4674422 | 1149..1258 | 100 | -> | Plus |
2R | 4673056..4673418 | 1..363 | 99 | -> | Plus |
2R | 4673477..4674261 | 364..1148 | 100 | -> | Plus |
2R | 4674476..4674838 | 1259..1621 | 100 | Plus |
Translation from 323 to 1459
> RE60063.pep MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP VILTTAISIVVGVCAYYYNNQYLAAGIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10918-PA | 381 | GG10918-PA | 4..381 | 1..378 | 1804 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13565-PA | 385 | GH13565-PA | 7..385 | 2..378 | 1469 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17883-PA | 378 | CG17883-PA | 1..378 | 1..378 | 1959 | 100 | Plus |
CG17883-PC | 376 | CG17883-PC | 1..376 | 1..378 | 1926 | 99.5 | Plus |
CG17883-PD | 371 | CG17883-PD | 1..371 | 1..378 | 1904 | 98.1 | Plus |
CG17883-PB | 282 | CG17883-PB | 1..282 | 1..282 | 1447 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19543-PA | 383 | GI19543-PA | 7..383 | 2..378 | 1478 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21153-PA | 379 | GL21153-PA | 11..379 | 14..378 | 1507 | 75.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25512-PA | 387 | GA25512-PA | 7..387 | 2..378 | 1524 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13620-PA | 377 | GM13620-PA | 1..377 | 1..378 | 1906 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21577-PA | 377 | GD21577-PA | 1..377 | 1..378 | 1921 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22046-PA | 382 | GJ22046-PA | 8..382 | 3..378 | 1483 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23394-PA | 391 | GK23394-PA | 12..391 | 4..378 | 1417 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19844-PA | 380 | GE19844-PA | 4..380 | 2..378 | 1853 | 91.5 | Plus |
Translation from 323 to 1459
> RE60063.hyp MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP VILTTAISIVVGVCAYYYNNQYLAAGIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17883-PA | 378 | CG17883-PA | 1..378 | 1..378 | 1959 | 100 | Plus |
CG17883-PC | 376 | CG17883-PC | 1..376 | 1..378 | 1926 | 99.5 | Plus |
CG17883-PD | 371 | CG17883-PD | 1..371 | 1..378 | 1904 | 98.1 | Plus |
CG17883-PB | 282 | CG17883-PB | 1..282 | 1..282 | 1447 | 97.9 | Plus |