Clone RE60235 Report

Search the DGRC for RE60235

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:602
Well:35
Vector:pFlc-1
Associated Gene/TranscriptSelR-RJ
Protein status:RE60235.pep: gold
Sequenced Size:2404

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
SelR-RC 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE60235.complete Sequence

2404 bp assembled on 2010-01-25

GenBank Submission: BT120206.1

> RE60235.complete
GCTTTCTCCTCGCCAAGCGTTCAAAAGCAGAAAAGCGCACGAAAATAGAA
CGGAAAATGTGGGAAATGTGGTAGACGGAAGTGGCAACGCGAATTGCATA
AATATTAGTTAGTACGCGTGGGCAGTGCGCAGTGGACAAAACATTGACTT
TTCCTCCTTGCTCTGCTCATTTTCCCCCTGTTGCTGTGCTGATTAAATAA
CCAGGCAGTGCCAAGTGCAGTTGTCACCTGAAATTAGCCACATAATGTTT
GCACTTTCTGCTCGCCACGCACTGCGGCGCACTCGAATATTCGCCATTCC
ACGCTTTTTCGCAGATTCACGCCAAGACAGCGACAATCCGGACAAAAGGT
ATTCCGGACCAGCAGCGACTATGGATAACAAGAGCGAGAAGGTTACGGTG
AACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTAC
CCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACT
ACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGC
TCGGAGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGT
CCTAGACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGCA
TGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCATATGGGCCAC
GTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTCTGCATCAATTC
CGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAGGCGGATCCAT
CGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGCTAACCACAAGG
AATACCATTACACCCGGAGGAGTAGCCCCATATAGACCAGCGGTAGATGC
TACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAAAGATATTTAGC
TATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAACAAAAAAAAAC
ATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGCGGAACGAGGAG
TGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCATTTGCTATATAC
TTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAATCTCTATCTCTA
TATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACGGAAATGCGAGT
CTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTTTACAATCTCAC
TCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCCCCTTGCATTCT
CATCGTATCTATAGGATATGTATATTGTACGTTAATAAAAATTAACCCAT
TTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTTGCGCAAGGTTA
TCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAGTTTATATGTTT
TTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGTTTTGAATCTAC
ATAGATCATTGAGCTTTTTCCACATACCATATTTCGATCATTATACAAGG
TCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTATGTCTGTGTGA
ATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCTGTATTTGGTTA
TTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTTTACTCACGCTC
AATTTTCTTTTGATTTCAATAACATAACCCGAATACTTTAACCAACATTA
TATCCATAAACTATATAGAGTGTTTTAAACAATCCAAATAATGTGTATTT
TCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAAAAACAAAAAAA
AAACTAAATGTACAACGCCTGTAAACGTTTTTTGGGGGTTTGTTTTGCTA
ACCAAAAACACGAAAACATTTAACTCATCGCTGAAATTATAACACCCGAA
AAAACGACACATGAAATGCTTAATTAACCAAAATAACATGTACGCCAAAT
CGTTCGGAAAATCATCTATATTCCTGATTCGTCAATTATTTTCACCGGTT
TATGTGACTTCATTTCATATTGTTTCACCTGCCACCCATTGTTAATTATC
GCTCTCTCTCTCTCTCTCTCTGCTGCATCTCCTCCTTCGCTCTCTGATTT
GCACTCCCATTTATTTGCCGTTATTTCTTCGCTCTTTTCTGTGATTCTTT
CTCTGCTTCACATTTATCACCCATTTCACAATCAATTTTCTATTTCTGTT
TGATTTGTTTACACCGAAAAACTTTGAATTAACCTTGCAAAACGATCAAA
AAAATGAATATATTGTAAAAAATGTCAACAAAATGCGCTACACAACAAAA
AAAAAAAAACAACAATCAAAACGTATCCAATTAATCCCAAAAAAAAAAAA
AAAA

RE60235.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RH 1757 SelR-RH 216..1757 311..1852 7710 100 Plus
SelR-RG 1778 SelR-RG 572..1778 646..1852 6035 100 Plus
SelR-RE 1375 SelR-RE 94..741 1..648 3240 100 Plus
SelR-RG 1778 SelR-RG 216..552 311..647 1685 100 Plus
SelR-RE 1375 SelR-RE 782..844 656..718 165 84.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6689425..6691166 2388..646 8665 99.9 Minus
chr3R 27901430 chr3R 6693509..6693822 314..1 1570 100 Minus
chr3R 27901430 chr3R 6692344..6692516 484..312 865 100 Minus
chr3R 27901430 chr3R 6692065..6692235 648..478 855 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10863886..10865628 2389..646 8670 99.9 Minus
3R 32079331 3R 10867972..10868285 314..1 1570 100 Minus
3R 32079331 3R 10866807..10866979 484..312 865 100 Minus
3R 32079331 3R 10866528..10866698 648..478 855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10604717..10606459 2389..646 8680 99.9 Minus
3R 31820162 3R 10608803..10609116 314..1 1570 100 Minus
3R 31820162 3R 10607638..10607810 484..312 865 100 Minus
3R 31820162 3R 10607359..10607529 648..478 855 100 Minus
3R 31820162 3R 10604586..10604648 718..656 165 84.1 Minus
Blast to na_te.dros performed 2019-03-15 23:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 7688..7788 1718..1618 135 61.8 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 867..950 1474..1398 125 65.5 Minus

RE60235.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:06:49 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6689425..6691164 648..2388 97 <- Minus
chr3R 6692066..6692230 483..647 100 <- Minus
chr3R 6692346..6692513 315..482 100 <- Minus
chr3R 6693509..6693822 1..314 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-25 16:11:35 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 1..453 371..823 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:20 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 1..453 371..823 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:32 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 1..579 245..823 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:11 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 1..579 245..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-25 16:11:35 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 207..1742 302..1837 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:20 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 207..1742 302..1837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:32 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 6..2392 1..2388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:11 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 6..2392 1..2388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:49 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863887..10865626 648..2388 99 <- Minus
3R 10866529..10866693 483..647 100 <- Minus
3R 10866809..10866976 315..482 100 <- Minus
3R 10867972..10868285 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:49 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863887..10865626 648..2388 99 <- Minus
3R 10866529..10866693 483..647 100 <- Minus
3R 10866809..10866976 315..482 100 <- Minus
3R 10867972..10868285 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:49 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863887..10865626 648..2388 99 <- Minus
3R 10866529..10866693 483..647 100 <- Minus
3R 10866809..10866976 315..482 100 <- Minus
3R 10867972..10868285 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:32 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6689609..6691348 648..2388 99 <- Minus
arm_3R 6692251..6692415 483..647 100 <- Minus
arm_3R 6692531..6692698 315..482 100 <- Minus
arm_3R 6693694..6694007 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:30:45 Download gff for RE60235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10604718..10606457 648..2388 99 <- Minus
3R 10607360..10607524 483..647 100 <- Minus
3R 10607640..10607807 315..482 100 <- Minus
3R 10608803..10609116 1..314 100   Minus

RE60235.hyp Sequence

Translation from 244 to 822

> RE60235.hyp
MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV
TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL
FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM
GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*

RE60235.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PJ 192 CG6584-PJ 1..192 1..192 1033 100 Plus
SelR-PC 197 CG6584-PC 1..183 1..189 905 88.9 Plus
SelR-PE 208 CG6584-PE 1..194 1..189 891 84.5 Plus
SelR-PH 150 CG6584-PH 1..150 43..192 817 100 Plus
SelR-PG 157 CG6584-PG 1..157 43..192 799 95.5 Plus

RE60235.pep Sequence

Translation from 244 to 822

> RE60235.pep
MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV
TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL
FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM
GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*

RE60235.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16176-PA 251 GF16176-PA 1..175 1..176 849 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17257-PA 238 GG17257-PA 1..175 1..176 911 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18739-PA 200 GH18739-PA 1..134 43..176 723 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PJ 192 CG6584-PJ 1..192 1..192 1033 100 Plus
SelR-PC 197 CG6584-PC 1..183 1..189 905 88.9 Plus
SelR-PE 208 CG6584-PE 1..194 1..189 891 84.5 Plus
SelR-PH 150 CG6584-PH 1..150 43..192 817 100 Plus
SelR-PG 157 CG6584-PG 1..157 43..192 799 95.5 Plus
SelR-PI 155 CG6584-PI 1..141 43..189 689 85.7 Plus
SelR-PA 155 CG6584-PA 1..141 43..189 689 85.7 Plus
SelR-PB 166 CG6584-PB 1..152 43..189 675 80.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24656-PA 211 GI24656-PA 1..134 43..176 723 95.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12062-PA 205 GL12062-PA 1..141 43..176 697 90.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19702-PF 148 GA19702-PF 1..148 43..191 739 89.9 Plus
Dpse\GA19702-PE 203 GA19702-PE 1..182 1..177 699 71.3 Plus
Dpse\GA19702-PD 156 GA19702-PD 1..135 43..177 663 85.9 Plus
Dpse\GA19702-PB 167 GA19702-PB 1..146 43..177 649 80.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26142-PA 250 GM26142-PA 1..176 1..176 939 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20695-PA 251 GD20695-PA 1..177 1..176 919 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24030-PA 200 GJ24030-PA 1..134 43..176 729 96.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13287-PA 209 GK13287-PA 1..136 43..178 726 95.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24659-PA 252 GE24659-PA 1..178 1..176 902 94.4 Plus