BDGP Sequence Production Resources |
Search the DGRC for RE60235
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 602 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SelR-RJ |
Protein status: | RE60235.pep: gold |
Sequenced Size: | 2404 |
Gene | Date | Evidence |
---|---|---|
SelR-RC | 2009-06-22 | Replacement based on scoring |
2404 bp assembled on 2010-01-25
GenBank Submission: BT120206.1
> RE60235.complete GCTTTCTCCTCGCCAAGCGTTCAAAAGCAGAAAAGCGCACGAAAATAGAA CGGAAAATGTGGGAAATGTGGTAGACGGAAGTGGCAACGCGAATTGCATA AATATTAGTTAGTACGCGTGGGCAGTGCGCAGTGGACAAAACATTGACTT TTCCTCCTTGCTCTGCTCATTTTCCCCCTGTTGCTGTGCTGATTAAATAA CCAGGCAGTGCCAAGTGCAGTTGTCACCTGAAATTAGCCACATAATGTTT GCACTTTCTGCTCGCCACGCACTGCGGCGCACTCGAATATTCGCCATTCC ACGCTTTTTCGCAGATTCACGCCAAGACAGCGACAATCCGGACAAAAGGT ATTCCGGACCAGCAGCGACTATGGATAACAAGAGCGAGAAGGTTACGGTG AACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTAC CCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACT ACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGC TCGGAGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGT CCTAGACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGCA TGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCATATGGGCCAC GTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTCTGCATCAATTC CGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAGGCGGATCCAT CGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGCTAACCACAAGG AATACCATTACACCCGGAGGAGTAGCCCCATATAGACCAGCGGTAGATGC TACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAAAGATATTTAGC TATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAACAAAAAAAAAC ATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGCGGAACGAGGAG TGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCATTTGCTATATAC TTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAATCTCTATCTCTA TATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACGGAAATGCGAGT CTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTTTACAATCTCAC TCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCCCCTTGCATTCT CATCGTATCTATAGGATATGTATATTGTACGTTAATAAAAATTAACCCAT TTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTTGCGCAAGGTTA TCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAGTTTATATGTTT TTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGTTTTGAATCTAC ATAGATCATTGAGCTTTTTCCACATACCATATTTCGATCATTATACAAGG TCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTATGTCTGTGTGA ATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCTGTATTTGGTTA TTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTTTACTCACGCTC AATTTTCTTTTGATTTCAATAACATAACCCGAATACTTTAACCAACATTA TATCCATAAACTATATAGAGTGTTTTAAACAATCCAAATAATGTGTATTT TCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAAAAACAAAAAAA AAACTAAATGTACAACGCCTGTAAACGTTTTTTGGGGGTTTGTTTTGCTA ACCAAAAACACGAAAACATTTAACTCATCGCTGAAATTATAACACCCGAA AAAACGACACATGAAATGCTTAATTAACCAAAATAACATGTACGCCAAAT CGTTCGGAAAATCATCTATATTCCTGATTCGTCAATTATTTTCACCGGTT TATGTGACTTCATTTCATATTGTTTCACCTGCCACCCATTGTTAATTATC GCTCTCTCTCTCTCTCTCTCTGCTGCATCTCCTCCTTCGCTCTCTGATTT GCACTCCCATTTATTTGCCGTTATTTCTTCGCTCTTTTCTGTGATTCTTT CTCTGCTTCACATTTATCACCCATTTCACAATCAATTTTCTATTTCTGTT TGATTTGTTTACACCGAAAAACTTTGAATTAACCTTGCAAAACGATCAAA AAAATGAATATATTGTAAAAAATGTCAACAAAATGCGCTACACAACAAAA AAAAAAAAACAACAATCAAAACGTATCCAATTAATCCCAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-RH | 1757 | SelR-RH | 216..1757 | 311..1852 | 7710 | 100 | Plus |
SelR-RG | 1778 | SelR-RG | 572..1778 | 646..1852 | 6035 | 100 | Plus |
SelR-RE | 1375 | SelR-RE | 94..741 | 1..648 | 3240 | 100 | Plus |
SelR-RG | 1778 | SelR-RG | 216..552 | 311..647 | 1685 | 100 | Plus |
SelR-RE | 1375 | SelR-RE | 782..844 | 656..718 | 165 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6689425..6691166 | 2388..646 | 8665 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 6693509..6693822 | 314..1 | 1570 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692344..6692516 | 484..312 | 865 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692065..6692235 | 648..478 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10863886..10865628 | 2389..646 | 8670 | 99.9 | Minus |
3R | 32079331 | 3R | 10867972..10868285 | 314..1 | 1570 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 484..312 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866528..10866698 | 648..478 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10604717..10606459 | 2389..646 | 8680 | 99.9 | Minus |
3R | 31820162 | 3R | 10608803..10609116 | 314..1 | 1570 | 100 | Minus |
3R | 31820162 | 3R | 10607638..10607810 | 484..312 | 865 | 100 | Minus |
3R | 31820162 | 3R | 10607359..10607529 | 648..478 | 855 | 100 | Minus |
3R | 31820162 | 3R | 10604586..10604648 | 718..656 | 165 | 84.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6689425..6691164 | 648..2388 | 97 | <- | Minus |
chr3R | 6692066..6692230 | 483..647 | 100 | <- | Minus |
chr3R | 6692346..6692513 | 315..482 | 100 | <- | Minus |
chr3R | 6693509..6693822 | 1..314 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 1..453 | 371..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 1..453 | 371..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 1..579 | 245..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 1..579 | 245..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 207..1742 | 302..1837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 207..1742 | 302..1837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 6..2392 | 1..2388 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 6..2392 | 1..2388 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863887..10865626 | 648..2388 | 99 | <- | Minus |
3R | 10866529..10866693 | 483..647 | 100 | <- | Minus |
3R | 10866809..10866976 | 315..482 | 100 | <- | Minus |
3R | 10867972..10868285 | 1..314 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863887..10865626 | 648..2388 | 99 | <- | Minus |
3R | 10866529..10866693 | 483..647 | 100 | <- | Minus |
3R | 10866809..10866976 | 315..482 | 100 | <- | Minus |
3R | 10867972..10868285 | 1..314 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863887..10865626 | 648..2388 | 99 | <- | Minus |
3R | 10866529..10866693 | 483..647 | 100 | <- | Minus |
3R | 10866809..10866976 | 315..482 | 100 | <- | Minus |
3R | 10867972..10868285 | 1..314 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6689609..6691348 | 648..2388 | 99 | <- | Minus |
arm_3R | 6692251..6692415 | 483..647 | 100 | <- | Minus |
arm_3R | 6692531..6692698 | 315..482 | 100 | <- | Minus |
arm_3R | 6693694..6694007 | 1..314 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10604718..10606457 | 648..2388 | 99 | <- | Minus |
3R | 10607360..10607524 | 483..647 | 100 | <- | Minus |
3R | 10607640..10607807 | 315..482 | 100 | <- | Minus |
3R | 10608803..10609116 | 1..314 | 100 | Minus |
Translation from 244 to 822
> RE60235.hyp MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PJ | 192 | CG6584-PJ | 1..192 | 1..192 | 1033 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 1..183 | 1..189 | 905 | 88.9 | Plus |
SelR-PE | 208 | CG6584-PE | 1..194 | 1..189 | 891 | 84.5 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 43..192 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 43..192 | 799 | 95.5 | Plus |
Translation from 244 to 822
> RE60235.pep MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16176-PA | 251 | GF16176-PA | 1..175 | 1..176 | 849 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17257-PA | 238 | GG17257-PA | 1..175 | 1..176 | 911 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18739-PA | 200 | GH18739-PA | 1..134 | 43..176 | 723 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PJ | 192 | CG6584-PJ | 1..192 | 1..192 | 1033 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 1..183 | 1..189 | 905 | 88.9 | Plus |
SelR-PE | 208 | CG6584-PE | 1..194 | 1..189 | 891 | 84.5 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 43..192 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 43..192 | 799 | 95.5 | Plus |
SelR-PI | 155 | CG6584-PI | 1..141 | 43..189 | 689 | 85.7 | Plus |
SelR-PA | 155 | CG6584-PA | 1..141 | 43..189 | 689 | 85.7 | Plus |
SelR-PB | 166 | CG6584-PB | 1..152 | 43..189 | 675 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24656-PA | 211 | GI24656-PA | 1..134 | 43..176 | 723 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12062-PA | 205 | GL12062-PA | 1..141 | 43..176 | 697 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19702-PF | 148 | GA19702-PF | 1..148 | 43..191 | 739 | 89.9 | Plus |
Dpse\GA19702-PE | 203 | GA19702-PE | 1..182 | 1..177 | 699 | 71.3 | Plus |
Dpse\GA19702-PD | 156 | GA19702-PD | 1..135 | 43..177 | 663 | 85.9 | Plus |
Dpse\GA19702-PB | 167 | GA19702-PB | 1..146 | 43..177 | 649 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26142-PA | 250 | GM26142-PA | 1..176 | 1..176 | 939 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20695-PA | 251 | GD20695-PA | 1..177 | 1..176 | 919 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24030-PA | 200 | GJ24030-PA | 1..134 | 43..176 | 729 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13287-PA | 209 | GK13287-PA | 1..136 | 43..178 | 726 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24659-PA | 252 | GE24659-PA | 1..178 | 1..176 | 902 | 94.4 | Plus |