BDGP Sequence Production Resources |
Search the DGRC for RE60306
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 603 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14253-RA |
Protein status: | RE60306.pep: gold |
Sequenced Size: | 2145 |
Gene | Date | Evidence |
---|---|---|
CG14253-RA | 2009-06-19 | Manual selection by Joe Carlson |
2145 bp assembled on 2009-10-16
GenBank Submission: BT100115.1
> RE60306.complete AGTGTCTGAACAACAGTCACGAAAGTCAGACGGATTGCGAGCGAATAGAA CGCAGAATTTGGAACCGATTCGGTGCGGTTTTATATCTTTTGGATGCGTG CCCGAACGTCGCGTGGATTAATTTCGTGTTTGGCAATTAACAGTGCCATC GCTTTTTATGCAAATCAGTGATATCGAAGCAGTGTAAATAACCCACATAA ATGTCAAATCGAGTATAAGGCGCCTACATCCCCTTCCCATTTCCCACCAC AAACCAACCCAAAACTTGACCTTGACTCATGAGCTTAGACGGATGTCACT TTTCCCAAACCAAAAACACCCATTCCGAACGACTTTAAGCCACTGGAAAA CACATATCAAGACCCATAAAAATCGCCTTTGGAAAGCAGATGTAAATTAA AAACTATTATTAGAAGTTTTGTGGATAAATACCAAATAAATGTGTTGAAA ATATGTTTCGGATGTGAAAAATTAAAAAAAAAAACCCGCAATCAAAACTA ACATGCCAAAATGGAGCTGATAAAAAAATACAAACAAGGAAAGCTAACCA CCAGCGATATTGCCCATATAAATCATATAGTAATATGTCTCATGGTCATG ATAGCAGTATTCTCCATACTATGGAACATAACGCTGATCATGATATCGGG TGATCTGTACGAGGGAATAGTCAGTGCCAAACTTATCTTCCGGGAGCGCA GCGTTGATAAAATGGATGAGTCCAGCAAGGAGATCCTTCATCGGGATTTC ATCAAAGCCACCCAGTATGCCTATGGAAGGCAGTACTCCGTGCAGGATGT CACACCTGAATCGCTGAAGAGCGAGAGCCAAATCTTTAAGTTACCGCATA TCTACGAATCTATCGAGAATCGACCGAAATTGGAGCGTCTCATTGCTGAA AATAAAGTGGAGGTTATTTCTACCACGACGACTCCTCCACCGAAGATCAC TTTCAATGCTGAGGCGGATCGCCACTTTTTGAGCACAATGTCCATCGATG TTATGGCCACTGTCTGGGAAAGAGGACCAGGAGCTCAGTTTGTCTACGTA TTTCCCCTCATATCAGAGATCGTGGCCATTATCTGGACAGCCATGTGTTT GATTTACCAGACAGGCAGCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGC GCATTGTGGTGCCCTCCATCGTTATCTTCTCGGTGATGAGTTTGTGCAGT GTAATCTACACAATCCTGACCAATGGCCACCTTAAGCACCTCTGTGGCCA ACTGAGGGAGAATCTCACAGATCCCACTGCCATCACCTGCGGCGATGCCA TCGCCCTGTTGCGTCCCATCATTCACGACCACAACGTATCCCATGATACT TATCTGGAGCTCTTCCGCTTCAGCTACTTGATCGGAATGGTACTGTGGAT AGTGGCTCTGCTGGTCATGGTGCTGCGTTATGTATTCGCCGTGGACTTCC AGCTGGTGGACATTGATGATATGTTCGATAGCGGACGAAATGGCTCTGCA CAAGTTCAGATTCAACCGGTATACACTGAGGTAGTGCAGCAGAGCAGTCC ACAGCACCAGACGCAGATGCGTCCGAGATCGGAAGATGACTATCAGAGTG CCAGGTCGCACTTGAGCGATCTTGCAGTTCCACTTCTGGAGGTGCAAAGC CAGTCCCAGATTCCGCCAACTAGCTTGGCCTAATCCTGCGGGTAGCCAAC AGATCAGCAATCTCAGGTTTATTTTTATACGTTGTGTTAGTGTTTAGTAT ATCTAACGACTAAGGAATATTTTATCAACTAACACAATTTAGGTTAAGTT TTAGGGGACCCTCTAGTCGAGAGTCTTCGATCAATCGATATTTCATTGAT AGTTTTCACTATCCTAGCTTAGTGAACTCGTGCCTCGATATCAAATATCT AAAATGTGGTTTAATCAAGGCTATAGAAAATACTACAATACCATTATTGT TGCATACTCTTGGGCTTATAAGTTCAATCTGAGCTTGAAATATGCCTGGT TAGGCCACATTGTCCAGTCGATTCCTTTGACTATAACCTCTGGTAACTTA AATCCATGAGTTTTATTTAAAATGCAACATAAAACCGAAAACAAGTGCGA ATAAAATACAAATATTGTGTATACGAGACAAGAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14253-RE | 2138 | CG14253-RE | 2..2138 | 1..2135 | 10615 | 99.8 | Plus |
CG14253-RC | 2168 | CG14253-RC | 389..2168 | 358..2135 | 8830 | 99.8 | Plus |
CG14253.f | 2287 | CG14253.f | 508..2287 | 358..2135 | 8830 | 99.8 | Plus |
CG14253-RC | 2168 | CG14253-RC | 1..357 | 1..357 | 1785 | 100 | Plus |
CG14253.f | 2287 | CG14253.f | 1..357 | 1..357 | 1785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22807769..22808768 | 1131..2130 | 4775 | 98.5 | Plus |
chr3R | 27901430 | chr3R | 22803589..22803944 | 1..357 | 1705 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 22807027..22807281 | 575..829 | 1260 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 22804601..22804812 | 358..574 | 860 | 95 | Plus |
chr3R | 27901430 | chr3R | 22807340..22807498 | 830..988 | 795 | 100 | Plus |
chr3R | 27901430 | chr3R | 22807554..22807700 | 984..1130 | 720 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26984705..26985709 | 1131..2135 | 5010 | 99.9 | Plus |
3R | 32079331 | 3R | 26980520..26980876 | 1..357 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 26983963..26984217 | 575..829 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26981533..26981751 | 358..574 | 1030 | 99.1 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 830..988 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984636 | 984..1130 | 720 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26725536..26726540 | 1131..2135 | 5010 | 99.9 | Plus |
3R | 31820162 | 3R | 26721351..26721707 | 1..357 | 1785 | 100 | Plus |
3R | 31820162 | 3R | 26724794..26725048 | 575..829 | 1275 | 100 | Plus |
3R | 31820162 | 3R | 26722364..26722582 | 358..574 | 1040 | 99 | Plus |
3R | 31820162 | 3R | 26725107..26725265 | 830..988 | 795 | 100 | Plus |
3R | 31820162 | 3R | 26725321..26725467 | 984..1130 | 720 | 99.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22803589..22803944 | 1..357 | 98 | -> | Plus |
chr3R | 22804601..22804812 | 358..574 | 94 | -> | Plus |
chr3R | 22807027..22807281 | 575..829 | 99 | -> | Plus |
chr3R | 22807340..22807498 | 830..988 | 100 | -> | Plus |
chr3R | 22807559..22807700 | 989..1130 | 100 | -> | Plus |
chr3R | 22807769..22808769 | 1131..2132 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RD | 1..1173 | 511..1683 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RD | 1..1173 | 511..1683 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RD | 1..1173 | 511..1683 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RD | 1..1173 | 511..1683 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RE | 1..2133 | 1..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RE | 1..2133 | 1..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RE | 3..2135 | 1..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14253-RE | 3..2135 | 1..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26984276..26984434 | 830..988 | 100 | -> | Plus |
3R | 26984495..26984636 | 989..1130 | 100 | -> | Plus |
3R | 26981533..26981751 | 358..574 | 99 | -> | Plus |
3R | 26983963..26984217 | 575..829 | 100 | -> | Plus |
3R | 26980520..26980876 | 1..357 | 100 | -> | Plus |
3R | 26984705..26985705 | 1131..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26984276..26984434 | 830..988 | 100 | -> | Plus |
3R | 26984495..26984636 | 989..1130 | 100 | -> | Plus |
3R | 26981533..26981751 | 358..574 | 99 | -> | Plus |
3R | 26983963..26984217 | 575..829 | 100 | -> | Plus |
3R | 26980520..26980876 | 1..357 | 100 | -> | Plus |
3R | 26984705..26985705 | 1131..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26984276..26984434 | 830..988 | 100 | -> | Plus |
3R | 26984495..26984636 | 989..1130 | 100 | -> | Plus |
3R | 26981533..26981751 | 358..574 | 99 | -> | Plus |
3R | 26983963..26984217 | 575..829 | 100 | -> | Plus |
3R | 26980520..26980876 | 1..357 | 100 | -> | Plus |
3R | 26984705..26985705 | 1131..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22807255..22807473 | 358..574 | 99 | -> | Plus |
arm_3R | 22806242..22806598 | 1..357 | 100 | -> | Plus |
arm_3R | 22809685..22809939 | 575..829 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 830..988 | 100 | -> | Plus |
arm_3R | 22810217..22810358 | 989..1130 | 100 | -> | Plus |
arm_3R | 22810427..22811427 | 1131..2132 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26721351..26721707 | 1..357 | 100 | -> | Plus |
3R | 26722364..26722582 | 358..574 | 99 | -> | Plus |
3R | 26724794..26725048 | 575..829 | 100 | -> | Plus |
3R | 26725107..26725265 | 830..988 | 100 | -> | Plus |
3R | 26725326..26725467 | 989..1130 | 100 | -> | Plus |
3R | 26725536..26726536 | 1131..2132 | 99 | Plus |
Translation from 510 to 1682
> RE60306.hyp MELIKKYKQGKLTTSDIAHINHIVICLMVMIAVFSILWNITLIMISGDLY EGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQYSVQDVTPE SLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTTPPPKITFNA EADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAIIWTAMCLIYQ TGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHLKHLCGQLRE NLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLIGMVLWIVAL LVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEVVQQSSPQHQ TQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14253-PF | 390 | CG14253-PF | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PA | 390 | CG14253-PA | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PD | 390 | CG14253-PD | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PE | 390 | CG14253-PE | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PC | 390 | CG14253-PC | 1..390 | 1..390 | 1990 | 100 | Plus |
Translation from 510 to 1682
> RE60306.pep MELIKKYKQGKLTTSDIAHINHIVICLMVMIAVFSILWNITLIMISGDLY EGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQYSVQDVTPE SLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTTPPPKITFNA EADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAIIWTAMCLIYQ TGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHLKHLCGQLRE NLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLIGMVLWIVAL LVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEVVQQSSPQHQ TQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23264-PA | 402 | GF23264-PA | 24..402 | 15..390 | 1502 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11516-PA | 399 | GG11516-PA | 24..399 | 15..390 | 1706 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18627-PA | 409 | GH18627-PA | 30..391 | 16..380 | 1107 | 59.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14253-PF | 390 | CG14253-PF | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PA | 390 | CG14253-PA | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PD | 390 | CG14253-PD | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PE | 390 | CG14253-PE | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PC | 390 | CG14253-PC | 1..390 | 1..390 | 1990 | 100 | Plus |
CG14253-PB | 399 | CG14253-PB | 24..399 | 15..390 | 1892 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24298-PA | 408 | GI24298-PA | 31..386 | 17..380 | 1177 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23892-PA | 404 | GL23892-PA | 25..404 | 16..390 | 1521 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27090-PB | 395 | GA27090-PB | 1..395 | 1..390 | 1619 | 77.2 | Plus |
Dpse\GA22497-PA | 395 | GA22497-PA | 1..395 | 1..390 | 1619 | 77.2 | Plus |
Dpse\GA27090-PA | 404 | GA27090-PA | 25..404 | 16..390 | 1529 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10356-PA | 399 | GM10356-PA | 24..399 | 15..390 | 1828 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21318-PA | 399 | GD21318-PA | 24..399 | 15..390 | 1838 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23076-PA | 406 | GJ23076-PA | 40..389 | 32..380 | 1114 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11380-PA | 402 | GK11380-PA | 28..396 | 11..377 | 1100 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23704-PA | 399 | GE23704-PA | 24..399 | 15..390 | 1847 | 91.8 | Plus |