Clone RE60306 Report

Search the DGRC for RE60306

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:603
Well:6
Vector:pFlc-1
Associated Gene/TranscriptCG14253-RA
Protein status:RE60306.pep: gold
Sequenced Size:2145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14253-RA 2009-06-19 Manual selection by Joe Carlson

Clone Sequence Records

RE60306.complete Sequence

2145 bp assembled on 2009-10-16

GenBank Submission: BT100115.1

> RE60306.complete
AGTGTCTGAACAACAGTCACGAAAGTCAGACGGATTGCGAGCGAATAGAA
CGCAGAATTTGGAACCGATTCGGTGCGGTTTTATATCTTTTGGATGCGTG
CCCGAACGTCGCGTGGATTAATTTCGTGTTTGGCAATTAACAGTGCCATC
GCTTTTTATGCAAATCAGTGATATCGAAGCAGTGTAAATAACCCACATAA
ATGTCAAATCGAGTATAAGGCGCCTACATCCCCTTCCCATTTCCCACCAC
AAACCAACCCAAAACTTGACCTTGACTCATGAGCTTAGACGGATGTCACT
TTTCCCAAACCAAAAACACCCATTCCGAACGACTTTAAGCCACTGGAAAA
CACATATCAAGACCCATAAAAATCGCCTTTGGAAAGCAGATGTAAATTAA
AAACTATTATTAGAAGTTTTGTGGATAAATACCAAATAAATGTGTTGAAA
ATATGTTTCGGATGTGAAAAATTAAAAAAAAAAACCCGCAATCAAAACTA
ACATGCCAAAATGGAGCTGATAAAAAAATACAAACAAGGAAAGCTAACCA
CCAGCGATATTGCCCATATAAATCATATAGTAATATGTCTCATGGTCATG
ATAGCAGTATTCTCCATACTATGGAACATAACGCTGATCATGATATCGGG
TGATCTGTACGAGGGAATAGTCAGTGCCAAACTTATCTTCCGGGAGCGCA
GCGTTGATAAAATGGATGAGTCCAGCAAGGAGATCCTTCATCGGGATTTC
ATCAAAGCCACCCAGTATGCCTATGGAAGGCAGTACTCCGTGCAGGATGT
CACACCTGAATCGCTGAAGAGCGAGAGCCAAATCTTTAAGTTACCGCATA
TCTACGAATCTATCGAGAATCGACCGAAATTGGAGCGTCTCATTGCTGAA
AATAAAGTGGAGGTTATTTCTACCACGACGACTCCTCCACCGAAGATCAC
TTTCAATGCTGAGGCGGATCGCCACTTTTTGAGCACAATGTCCATCGATG
TTATGGCCACTGTCTGGGAAAGAGGACCAGGAGCTCAGTTTGTCTACGTA
TTTCCCCTCATATCAGAGATCGTGGCCATTATCTGGACAGCCATGTGTTT
GATTTACCAGACAGGCAGCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGC
GCATTGTGGTGCCCTCCATCGTTATCTTCTCGGTGATGAGTTTGTGCAGT
GTAATCTACACAATCCTGACCAATGGCCACCTTAAGCACCTCTGTGGCCA
ACTGAGGGAGAATCTCACAGATCCCACTGCCATCACCTGCGGCGATGCCA
TCGCCCTGTTGCGTCCCATCATTCACGACCACAACGTATCCCATGATACT
TATCTGGAGCTCTTCCGCTTCAGCTACTTGATCGGAATGGTACTGTGGAT
AGTGGCTCTGCTGGTCATGGTGCTGCGTTATGTATTCGCCGTGGACTTCC
AGCTGGTGGACATTGATGATATGTTCGATAGCGGACGAAATGGCTCTGCA
CAAGTTCAGATTCAACCGGTATACACTGAGGTAGTGCAGCAGAGCAGTCC
ACAGCACCAGACGCAGATGCGTCCGAGATCGGAAGATGACTATCAGAGTG
CCAGGTCGCACTTGAGCGATCTTGCAGTTCCACTTCTGGAGGTGCAAAGC
CAGTCCCAGATTCCGCCAACTAGCTTGGCCTAATCCTGCGGGTAGCCAAC
AGATCAGCAATCTCAGGTTTATTTTTATACGTTGTGTTAGTGTTTAGTAT
ATCTAACGACTAAGGAATATTTTATCAACTAACACAATTTAGGTTAAGTT
TTAGGGGACCCTCTAGTCGAGAGTCTTCGATCAATCGATATTTCATTGAT
AGTTTTCACTATCCTAGCTTAGTGAACTCGTGCCTCGATATCAAATATCT
AAAATGTGGTTTAATCAAGGCTATAGAAAATACTACAATACCATTATTGT
TGCATACTCTTGGGCTTATAAGTTCAATCTGAGCTTGAAATATGCCTGGT
TAGGCCACATTGTCCAGTCGATTCCTTTGACTATAACCTCTGGTAACTTA
AATCCATGAGTTTTATTTAAAATGCAACATAAAACCGAAAACAAGTGCGA
ATAAAATACAAATATTGTGTATACGAGACAAGAAAAAAAAAAAAA

RE60306.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RE 2138 CG14253-RE 2..2138 1..2135 10615 99.8 Plus
CG14253-RC 2168 CG14253-RC 389..2168 358..2135 8830 99.8 Plus
CG14253.f 2287 CG14253.f 508..2287 358..2135 8830 99.8 Plus
CG14253-RC 2168 CG14253-RC 1..357 1..357 1785 100 Plus
CG14253.f 2287 CG14253.f 1..357 1..357 1785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22807769..22808768 1131..2130 4775 98.5 Plus
chr3R 27901430 chr3R 22803589..22803944 1..357 1705 99.2 Plus
chr3R 27901430 chr3R 22807027..22807281 575..829 1260 99.6 Plus
chr3R 27901430 chr3R 22804601..22804812 358..574 860 95 Plus
chr3R 27901430 chr3R 22807340..22807498 830..988 795 100 Plus
chr3R 27901430 chr3R 22807554..22807700 984..1130 720 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985709 1131..2135 5010 99.9 Plus
3R 32079331 3R 26980520..26980876 1..357 1785 100 Plus
3R 32079331 3R 26983963..26984217 575..829 1275 100 Plus
3R 32079331 3R 26981533..26981751 358..574 1030 99.1 Plus
3R 32079331 3R 26984276..26984434 830..988 795 100 Plus
3R 32079331 3R 26984490..26984636 984..1130 720 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26725536..26726540 1131..2135 5010 99.9 Plus
3R 31820162 3R 26721351..26721707 1..357 1785 100 Plus
3R 31820162 3R 26724794..26725048 575..829 1275 100 Plus
3R 31820162 3R 26722364..26722582 358..574 1040 99 Plus
3R 31820162 3R 26725107..26725265 830..988 795 100 Plus
3R 31820162 3R 26725321..26725467 984..1130 720 99.3 Plus
Blast to na_te.dros performed on 2019-03-15 16:43:19 has no hits.

RE60306.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:44:29 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22803589..22803944 1..357 98 -> Plus
chr3R 22804601..22804812 358..574 94 -> Plus
chr3R 22807027..22807281 575..829 99 -> Plus
chr3R 22807340..22807498 830..988 100 -> Plus
chr3R 22807559..22807700 989..1130 100 -> Plus
chr3R 22807769..22808769 1131..2132 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:58:35 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RD 1..1173 511..1683 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:45:25 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RD 1..1173 511..1683 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:21:18 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RD 1..1173 511..1683 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:34 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RD 1..1173 511..1683 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-16 16:47:33 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RE 1..2133 1..2132 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:45:25 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RE 1..2133 1..2132 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:21:18 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RE 3..2135 1..2132 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:34 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RE 3..2135 1..2132 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:29 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26984276..26984434 830..988 100 -> Plus
3R 26984495..26984636 989..1130 100 -> Plus
3R 26981533..26981751 358..574 99 -> Plus
3R 26983963..26984217 575..829 100 -> Plus
3R 26980520..26980876 1..357 100 -> Plus
3R 26984705..26985705 1131..2132 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:29 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26984276..26984434 830..988 100 -> Plus
3R 26984495..26984636 989..1130 100 -> Plus
3R 26981533..26981751 358..574 99 -> Plus
3R 26983963..26984217 575..829 100 -> Plus
3R 26980520..26980876 1..357 100 -> Plus
3R 26984705..26985705 1131..2132 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:44:29 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26984276..26984434 830..988 100 -> Plus
3R 26984495..26984636 989..1130 100 -> Plus
3R 26981533..26981751 358..574 99 -> Plus
3R 26983963..26984217 575..829 100 -> Plus
3R 26980520..26980876 1..357 100 -> Plus
3R 26984705..26985705 1131..2132 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:21:18 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22807255..22807473 358..574 99 -> Plus
arm_3R 22806242..22806598 1..357 100 -> Plus
arm_3R 22809685..22809939 575..829 100 -> Plus
arm_3R 22809998..22810156 830..988 100 -> Plus
arm_3R 22810217..22810358 989..1130 100 -> Plus
arm_3R 22810427..22811427 1131..2132 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:49 Download gff for RE60306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26721351..26721707 1..357 100 -> Plus
3R 26722364..26722582 358..574 99 -> Plus
3R 26724794..26725048 575..829 100 -> Plus
3R 26725107..26725265 830..988 100 -> Plus
3R 26725326..26725467 989..1130 100 -> Plus
3R 26725536..26726536 1131..2132 99   Plus

RE60306.hyp Sequence

Translation from 510 to 1682

> RE60306.hyp
MELIKKYKQGKLTTSDIAHINHIVICLMVMIAVFSILWNITLIMISGDLY
EGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQYSVQDVTPE
SLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTTPPPKITFNA
EADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAIIWTAMCLIYQ
TGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHLKHLCGQLRE
NLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLIGMVLWIVAL
LVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEVVQQSSPQHQ
TQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*

RE60306.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PF 390 CG14253-PF 1..390 1..390 1990 100 Plus
CG14253-PA 390 CG14253-PA 1..390 1..390 1990 100 Plus
CG14253-PD 390 CG14253-PD 1..390 1..390 1990 100 Plus
CG14253-PE 390 CG14253-PE 1..390 1..390 1990 100 Plus
CG14253-PC 390 CG14253-PC 1..390 1..390 1990 100 Plus

RE60306.pep Sequence

Translation from 510 to 1682

> RE60306.pep
MELIKKYKQGKLTTSDIAHINHIVICLMVMIAVFSILWNITLIMISGDLY
EGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQYSVQDVTPE
SLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTTPPPKITFNA
EADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAIIWTAMCLIYQ
TGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHLKHLCGQLRE
NLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLIGMVLWIVAL
LVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEVVQQSSPQHQ
TQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*

RE60306.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23264-PA 402 GF23264-PA 24..402 15..390 1502 75.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11516-PA 399 GG11516-PA 24..399 15..390 1706 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18627-PA 409 GH18627-PA 30..391 16..380 1107 59.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PF 390 CG14253-PF 1..390 1..390 1990 100 Plus
CG14253-PA 390 CG14253-PA 1..390 1..390 1990 100 Plus
CG14253-PD 390 CG14253-PD 1..390 1..390 1990 100 Plus
CG14253-PE 390 CG14253-PE 1..390 1..390 1990 100 Plus
CG14253-PC 390 CG14253-PC 1..390 1..390 1990 100 Plus
CG14253-PB 399 CG14253-PB 24..399 15..390 1892 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24298-PA 408 GI24298-PA 31..386 17..380 1177 61.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23892-PA 404 GL23892-PA 25..404 16..390 1521 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27090-PB 395 GA27090-PB 1..395 1..390 1619 77.2 Plus
Dpse\GA22497-PA 395 GA22497-PA 1..395 1..390 1619 77.2 Plus
Dpse\GA27090-PA 404 GA27090-PA 25..404 16..390 1529 75.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10356-PA 399 GM10356-PA 24..399 15..390 1828 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21318-PA 399 GD21318-PA 24..399 15..390 1838 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23076-PA 406 GJ23076-PA 40..389 32..380 1114 61.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11380-PA 402 GK11380-PA 28..396 11..377 1100 57.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23704-PA 399 GE23704-PA 24..399 15..390 1847 91.8 Plus