BDGP Sequence Production Resources |
Search the DGRC for RE60324
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 603 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Drip-RA |
Protein status: | RE60324.pep: gold |
Sequenced Size: | 1784 |
Gene | Date | Evidence |
---|---|---|
CG9023 | 2003-01-01 | Sim4 clustering to Release 3 |
Drip | 2008-04-29 | Release 5.5 accounting |
Drip | 2008-08-15 | Release 5.9 accounting |
Drip | 2008-12-18 | 5.12 accounting |
1784 bp (1784 high quality bases) assembled on 2005-10-06
GenBank Submission: BT023883
> RE60324.complete GTTGTTTGCGCTCGAGCAGCGAACGTGGTAGCACAGCTTTAAGCACTACA GCACTACAGTACAAACTGCGAGAAAGAAAAGCGGCAGTTTCGAAAATCCG AAAAGGAAATCGAGTTCGGAGCGGTTAGTTTAATTGGCGATAATAATAAA CTAATAATAAAATCGAGTTATTGCACGTTGCGCTTTCCAATTTCGAAAAG GAAATCTGAAAATATTGTAGCCCAGTGAAGAAAATAAGTCAATCGGGTGA AATTAAATTGATAACAACACCGCTTTCCGCCCCATATTCGACTCCGTGTG GTCAAGTGGCAGACAATTGTGCAACCTCAAGACTCTTAACCTTAACAATT ATATTTCGGCCACAAAAAACTATTGGCACAATTCAGTTCGATTCGAGTGC GCGCTAACTCACTTTTACCCGCAGCAAAAAGCAATAAGGCAAAAAGCACG CTTTGAAAACGAAAGCAAAGCACAAGTTCGCTTCGAAACCCCCCACGCTT GCCAAAAATCTCAAGTGGCAGCCCCCAGAAGACAGTAGATCGTAGCCAGA AGACCGAAGACAGAAGACAGCAAAATGGTCGAGAAAACAGAAATGTCGAA ATTCGTTGGCGTTGCCGACATAACCGAGAACAAGAAAATCTGGCGCATGC TGCTCGGCGAACTGGTGGGCACATTTTTCTTGATCTTCGTCGGCGTTGGC AGCACGACGAGCGGAAGTGTACCACAAATCGCATTCACCTTTGGCTTGAC GGTGGCCACCATCGCCCAGGGCTTGGGCCACCTCAGTGGCTGTCACATTA ATCCGGCGGTCACCCTTGGATTCCTGATCGTTGGTGAGATCAGCATTCTG AAGGCTGCCTTCTACATCATCGTCCAATGCGTGGGCGCCATTGCTGGAGC GGCTGTGATAAAGGTGGCACTCGATGGAGTGGCTGGTGGCGACCTGGGAG TATCCTCCTTTGATCCCTCCCTGAACTGTGCACAGGCGGTGCTGATCGAA GCGCTGATCACCTTTATTTTGGTTTTCGTGGTCAAGGCTGTTTCGGATCC TGGACGCCAGGATATCAAGGGATCAGCGCCACTGGCTGTTGGTTTGGCCA TCGCCGCTGGCCATTTGTGTGCAATCAAACTGAGCGGTGCCAGCATGAAT CCCGCCCGGTCCTTTGGTCCCGCCGTAGTGCAGGGCGTCTGGACCTATCA CTGGGTTTACTGGGTGGGTCCCATTGCCGGCGGCCTGTTGGCCGGAATCA TCTACAGATTAATCTTCAAGGTACGCAAGGGCGATGATGAGACCGACTCG TACGACTTCTAAACAGTGGCCGAATACCATATATGTATTTTTGTAAATGT CCGCACCTGCTTTCCATTCCCATCACACATTCGCTTTCCCATCGAATTCG TTTGCCGAAATTTCTCGTAGTTTAGGTTTGCTCCACCATCACAACCAAGC TGAATTTTCAACGCAATTTGTACCATTTTATTTTTTAAACAATAAGAAAG CAAATGTCTCGTTTAGTTGTACCGCGATGCCCCAGCACTTTAAAATATGC AATATTGTATTTGAGTAATTTTAAGCTAAATTATATGCACATCATCATTA CGCGAATCGAAGGAAAACTGTATTGAAGCTTAACTAAATTGTACTGGGAA ATCACTTTCCAAAGCAGCGAACAGGTGGATTACCTACGCTGTTGATCGCC ACTTGCTGAGCACCTGCGAATTGTATTATGACTATGTGTAATAAAAAAAT ATAAAGAAATTACCAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drip.d | 2141 | Drip.d | 279..2040 | 5..1766 | 8810 | 100 | Plus |
Drip-RA | 1885 | Drip-RA | 23..1784 | 5..1766 | 8810 | 100 | Plus |
Drip-RB | 1480 | Drip-RB | 119..1461 | 424..1766 | 6715 | 100 | Plus |
Drip-RB | 1480 | Drip-RB | 1..119 | 5..123 | 595 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7299414..7300072 | 1766..1124 | 2985 | 97.6 | Minus |
chr2R | 21145070 | chr2R | 7316553..7317138 | 590..5 | 2930 | 100 | Minus |
chr2R | 21145070 | chr2R | 7300130..7300486 | 1123..767 | 1770 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 7308755..7308937 | 770..588 | 915 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11411932..11412574 | 1766..1124 | 3215 | 100 | Minus |
2R | 25286936 | 2R | 11429053..11429638 | 590..5 | 2930 | 100 | Minus |
2R | 25286936 | 2R | 11412632..11412988 | 1123..767 | 1785 | 100 | Minus |
2R | 25286936 | 2R | 11421257..11421439 | 770..588 | 915 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11413131..11413773 | 1766..1124 | 3215 | 100 | Minus |
2R | 25260384 | 2R | 11430252..11430837 | 590..5 | 2930 | 100 | Minus |
2R | 25260384 | 2R | 11413831..11414187 | 1123..767 | 1785 | 100 | Minus |
2R | 25260384 | 2R | 11422456..11422638 | 770..588 | 915 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7299412..7300072 | 1124..1768 | 97 | <- | Minus |
chr2R | 7300130..7300483 | 770..1123 | 99 | <- | Minus |
chr2R | 7308756..7308934 | 591..769 | 100 | <- | Minus |
chr2R | 7316553..7317141 | 1..590 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RB | 1..738 | 575..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RB | 1..738 | 575..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 1..738 | 575..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RB | 1..738 | 575..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 1..738 | 575..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 1..1755 | 2..1756 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 1..1755 | 2..1756 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 3..1745 | 1..1742 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 1..1755 | 2..1756 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drip-RA | 3..1745 | 1..1742 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11411930..11412574 | 1124..1768 | 99 | <- | Minus |
2R | 11412632..11412985 | 770..1123 | 100 | <- | Minus |
2R | 11421258..11421436 | 591..769 | 100 | <- | Minus |
2R | 11429053..11429641 | 1..590 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11411930..11412574 | 1124..1768 | 99 | <- | Minus |
2R | 11412632..11412985 | 770..1123 | 100 | <- | Minus |
2R | 11421258..11421436 | 591..769 | 100 | <- | Minus |
2R | 11429053..11429641 | 1..590 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11411930..11412574 | 1124..1768 | 99 | <- | Minus |
2R | 11412632..11412985 | 770..1123 | 100 | <- | Minus |
2R | 11421258..11421436 | 591..769 | 100 | <- | Minus |
2R | 11429053..11429641 | 1..590 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7299435..7300079 | 1124..1768 | 99 | <- | Minus |
arm_2R | 7300137..7300490 | 770..1123 | 100 | <- | Minus |
arm_2R | 7308763..7308941 | 591..769 | 100 | <- | Minus |
arm_2R | 7316558..7317146 | 1..590 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11413129..11413773 | 1124..1768 | 99 | <- | Minus |
2R | 11413831..11414184 | 770..1123 | 100 | <- | Minus |
2R | 11422457..11422635 | 591..769 | 100 | <- | Minus |
2R | 11430252..11430840 | 1..590 | 99 | Minus |
Translation from 574 to 1311
> RE60324.pep MVEKTEMSKFVGVADITENKKIWRMLLGELVGTFFLIFVGVGSTTSGSVP QIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIV QCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILV FVVKAVSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPA VVQGVWTYHWVYWVGPIAGGLLAGIIYRLIFKVRKGDDETDSYDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12394-PA | 245 | GF12394-PA | 1..245 | 1..245 | 1144 | 90.6 | Plus |
Dana\GF12555-PA | 264 | GF12555-PA | 1..245 | 7..243 | 462 | 38.8 | Plus |
Dana\GF11832-PA | 266 | GF11832-PA | 23..247 | 25..238 | 365 | 36.4 | Plus |
Dana\GF11831-PA | 272 | GF11831-PA | 32..249 | 26..232 | 321 | 37.2 | Plus |
Dana\GF11830-PA | 244 | GF11830-PA | 12..238 | 26..242 | 318 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22646-PA | 245 | GG22646-PA | 1..245 | 1..245 | 1204 | 95.1 | Plus |
Dere\GG20203-PA | 264 | GG20203-PA | 1..245 | 7..243 | 444 | 38.9 | Plus |
Dere\GG20012-PA | 294 | GG20012-PA | 53..279 | 26..241 | 363 | 37 | Plus |
Dere\GG20011-PA | 271 | GG20011-PA | 30..253 | 26..241 | 351 | 38.3 | Plus |
Dere\GG10075-PA | 694 | GG10075-PA | 63..295 | 21..242 | 330 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20503-PA | 247 | GH20503-PA | 1..247 | 1..245 | 1074 | 83.8 | Plus |
Dgri\GH21387-PA | 264 | GH21387-PA | 15..245 | 17..243 | 450 | 38.2 | Plus |
Dgri\GH21221-PA | 259 | GH21221-PA | 24..249 | 25..239 | 368 | 38.5 | Plus |
Dgri\GH21220-PA | 267 | GH21220-PA | 21..252 | 17..237 | 362 | 38 | Plus |
Dgri\GH11064-PA | 705 | GH11064-PA | 61..279 | 21..235 | 316 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drip-PB | 245 | CG9023-PB | 1..245 | 1..245 | 1244 | 100 | Plus |
Drip-PA | 245 | CG9023-PA | 1..245 | 1..245 | 1244 | 100 | Plus |
Drip-PD | 242 | CG9023-PD | 3..242 | 6..245 | 1220 | 100 | Plus |
Drip-PC | 243 | CG9023-PC | 4..243 | 6..245 | 1220 | 100 | Plus |
Drip-PE | 239 | CG9023-PE | 1..239 | 7..245 | 1215 | 100 | Plus |
Drip-PF | 278 | CG9023-PF | 1..236 | 1..236 | 1187 | 99.2 | Plus |
Drip-PG | 233 | CG9023-PG | 1..233 | 1..233 | 1177 | 100 | Plus |
Prip-PD | 259 | CG7777-PD | 1..233 | 7..234 | 473 | 40.4 | Plus |
Prip-PA | 264 | CG7777-PA | 1..233 | 7..234 | 473 | 40.4 | Plus |
Prip-PB | 268 | CG7777-PB | 1..233 | 7..234 | 473 | 40.4 | Plus |
Prip-PC | 270 | CG7777-PC | 1..233 | 7..234 | 473 | 40.4 | Plus |
bib-PA | 696 | CG4722-PA | 63..295 | 21..242 | 365 | 36.1 | Plus |
bib-PB | 737 | CG4722-PB | 63..295 | 21..242 | 365 | 36.1 | Plus |
Eglp3-PB | 270 | CG17662-PB | 32..253 | 28..241 | 361 | 36.9 | Plus |
Eglp2-PA | 265 | CG17664-PA | 24..250 | 26..241 | 356 | 37 | Plus |
Eglp2-PC | 290 | CG17664-PC | 49..275 | 26..241 | 356 | 37 | Plus |
Eglp4-PB | 249 | CG4019-PB | 13..226 | 27..232 | 302 | 35.5 | Plus |
Eglp4-PD | 249 | CG4019-PD | 13..226 | 27..232 | 302 | 35.5 | Plus |
Eglp4-PA | 249 | CG4019-PA | 13..226 | 27..232 | 302 | 35.5 | Plus |
Eglp4-PC | 261 | CG4019-PC | 25..238 | 27..232 | 302 | 35.5 | Plus |
Eglp4-PE | 286 | CG4019-PE | 50..263 | 27..232 | 302 | 35.5 | Plus |
Eglp4-PF | 297 | CG4019-PF | 61..274 | 27..232 | 302 | 35.5 | Plus |
Eglp1-PA | 238 | CG5398-PA | 14..198 | 29..204 | 187 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21049-PA | 247 | GI21049-PA | 1..247 | 1..245 | 1081 | 84.2 | Plus |
Dmoj\GI18564-PA | 264 | GI18564-PA | 1..245 | 7..243 | 459 | 39.7 | Plus |
Dmoj\GI20505-PA | 274 | GI20505-PA | 27..257 | 18..237 | 369 | 38.1 | Plus |
Dmoj\GI17582-PA | 705 | GI17582-PA | 61..279 | 21..235 | 316 | 34.8 | Plus |
Dmoj\GI20506-PA | 247 | GI20506-PA | 16..233 | 26..232 | 304 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10680-PA | 135 | GL10680-PA | 1..122 | 1..119 | 463 | 82.8 | Plus |
Dper\GL17598-PA | 266 | GL17598-PA | 24..253 | 25..242 | 361 | 38.3 | Plus |
Dper\GL18952-PA | 691 | GL18952-PA | 61..283 | 21..239 | 331 | 35.1 | Plus |
Dper\GL17597-PA | 272 | GL17597-PA | 32..252 | 26..238 | 309 | 35.3 | Plus |
Dper\GL17596-PA | 249 | GL17596-PA | 12..238 | 26..244 | 304 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24443-PA | 244 | GA24443-PA | 1..244 | 1..245 | 1103 | 88.2 | Plus |
Dpse\GA20580-PA | 264 | GA20580-PA | 1..245 | 7..243 | 460 | 40.1 | Plus |
Dpse\GA24838-PA | 266 | GA24838-PA | 24..253 | 25..242 | 365 | 38.7 | Plus |
Dpse\GA24837-PA | 273 | GA24837-PA | 33..253 | 26..238 | 308 | 35.3 | Plus |
Dpse\GA17871-PA | 249 | GA17871-PA | 12..238 | 26..244 | 304 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20426-PA | 245 | GM20426-PA | 1..245 | 1..245 | 1241 | 98.8 | Plus |
Dsec\GM21291-PA | 264 | GM21291-PA | 1..245 | 7..243 | 440 | 38.9 | Plus |
Dsec\GM15524-PA | 265 | GM15524-PA | 24..251 | 26..242 | 351 | 36 | Plus |
Dsec\GM15523-PA | 274 | GM15523-PA | 30..257 | 26..241 | 343 | 36.8 | Plus |
Dsec\GM17851-PA | 684 | GM17851-PA | 63..295 | 21..242 | 317 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10798-PA | 264 | GD10798-PA | 1..245 | 7..243 | 440 | 38.9 | Plus |
Dsim\GD25028-PA | 265 | GD25028-PA | 24..251 | 26..242 | 351 | 36 | Plus |
Dsim\GD25027-PA | 265 | GD25027-PA | 30..248 | 26..241 | 349 | 37.8 | Plus |
Dsim\GD23647-PA | 674 | GD23647-PA | 63..295 | 21..242 | 330 | 35.3 | Plus |
Dsim\GD25901-PA | 99 | GD25901-PA | 1..58 | 1..58 | 264 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21971-PA | 305 | GJ21971-PA | 64..305 | 6..245 | 1007 | 81 | Plus |
Dvir\GJ20358-PA | 264 | GJ20358-PA | 1..245 | 7..243 | 462 | 39.7 | Plus |
Dvir\GJ22357-PA | 247 | GJ22357-PA | 12..241 | 25..244 | 371 | 37.9 | Plus |
Dvir\bib-PA | 700 | GJ17924-PA | 61..280 | 21..236 | 317 | 35.1 | Plus |
Dvir\GJ22355-PA | 252 | GJ22355-PA | 12..222 | 26..228 | 272 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21884-PA | 245 | GK21884-PA | 1..245 | 1..245 | 1097 | 84.5 | Plus |
Dwil\GK21417-PA | 264 | GK21417-PA | 1..233 | 7..234 | 456 | 40.4 | Plus |
Dwil\GK23178-PA | 270 | GK23178-PA | 26..254 | 25..242 | 337 | 35.4 | Plus |
Dwil\GK23177-PA | 262 | GK23177-PA | 20..243 | 26..241 | 336 | 37.9 | Plus |
Dwil\GK23174-PA | 249 | GK23174-PA | 12..238 | 26..244 | 303 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13520-PA | 245 | GE13520-PA | 1..245 | 1..245 | 1211 | 95.1 | Plus |
Dyak\GE12363-PA | 264 | GE12363-PA | 1..245 | 7..243 | 440 | 38.9 | Plus |
Dyak\GE11549-PA | 265 | GE11549-PA | 24..251 | 26..242 | 370 | 36.8 | Plus |
Dyak\GE11548-PA | 271 | GE11548-PA | 30..253 | 26..241 | 337 | 36.6 | Plus |
Dyak\GE18888-PA | 699 | GE18888-PA | 63..295 | 21..242 | 325 | 35.3 | Plus |
Translation from 574 to 1311
> RE60324.hyp MVEKTEMSKFVGVADITENKKIWRMLLGELVGTFFLIFVGVGSTTSGSVP QIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIV QCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILV FVVKAVSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPA VVQGVWTYHWVYWVGPIAGGLLAGIIYRLIFKVRKGDDETDSYDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drip-PB | 245 | CG9023-PB | 1..245 | 1..245 | 1244 | 100 | Plus |
Drip-PA | 245 | CG9023-PA | 1..245 | 1..245 | 1244 | 100 | Plus |
Drip-PD | 242 | CG9023-PD | 3..242 | 6..245 | 1220 | 100 | Plus |
Drip-PC | 243 | CG9023-PC | 4..243 | 6..245 | 1220 | 100 | Plus |
Drip-PE | 239 | CG9023-PE | 1..239 | 7..245 | 1215 | 100 | Plus |