Clone RE60340 Report

Search the DGRC for RE60340

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:603
Well:40
Vector:pFlc-1
Associated Gene/TranscriptzetaTry-RA
Protein status:RE60340.pep: gold
Preliminary Size:851
Sequenced Size:958

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12387 2002-01-01 Sim4 clustering to Release 2
CG12387 2002-04-26 Blastp of sequenced clone
CG12387 2003-01-01 Sim4 clustering to Release 3
zetaTry 2008-04-29 Release 5.5 accounting
zetaTry 2008-08-15 Release 5.9 accounting
zetaTry 2008-12-18 5.12 accounting

Clone Sequence Records

RE60340.complete Sequence

958 bp (958 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113523

> RE60340.complete
AGTTCCCTATTCTCCTTGCCTTTGTAAGCATGTCGAGCTCTTGGATAGTT
GGCCTCTTGGCCTTTCTCGTCAGCTTGGTGGCCTTGACCCAAGGTCTTCC
CCTTCTGGAGGATCTGGATGAGAAGAGCGTTCCGGATGGCCGCATTGTGG
GTGGCTATGCGACGGACATAGCGCAGGTCCCGTACCAGATTTCCCTGCGC
TACAAGGGTATCACCACGCCGGAGAATCCCTTTCGCCATCGTTGCGGAGG
ATCCATTTTCAATGAGACTACAATAGTGACAGCGGCGCACTGCGTCATCG
GCACGGTGGCAAGTCAATATAAAGTGGTGGCCGGGACAAATTTCCAAACC
GGCTCCGATGGCGTTATCACCAATGTCAAGGAGATCGTTATGCACGAAGG
GTATTACTCGGGAGCTGCCTACAACAACGATATTGCCATTCTATTTGTGG
ATCCCCCATTGCCGCTCAACAACTTCACCATCAAGGCCATTAAGCTGGCC
TTGGAACAACCAATTGAGGGAACGGTCAGCAAGGTCAGCGGATGGGGAAC
CACTTCTCCCGGCGGCTACTCCTCGAACCAACTGCTCGCGGTCGATGTCC
CGATTGTGAGCAACGAGCTTTGTGATCAGGACTACGAGGATTTTGGCGAC
GAGACCTACCGCATTACATCGGCCATGTTGTGTGCCGGCAAACGGGGTGT
CGGTGGTGCGGATGCCTGCCAGGGAGATTCCGGAGGACCGTTGGCGGTGC
GCGATGAACTCTATGGAGTCGTGTCCTGGGGCAACAGTTGTGCACTGCCC
AATTATCCCGGCGTCTATGCCAATGTGGCGTACCTGAGGCCTTGGATCGA
TGCCGTTTTGGCAGGGCTCTAAATTAATTATATCACCCATTCCACGTTTT
GTAAATAAATTGGCTTCTGAAGCCACGTGCCTTAGGGTTTTCCAAAAAAA
AAAAAAAA

RE60340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
zetaTry-RA 943 zetaTry-RA 1..943 1..943 4715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7226641..7227583 943..1 4670 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11339186..11340128 943..1 4715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11340385..11341327 943..1 4715 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:33:13 has no hits.

RE60340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:34:02 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7226641..7227583 1..943 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:53 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..843 30..872 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:25 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..843 30..872 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:05:05 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..843 30..872 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:22 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..843 30..872 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:03 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..843 30..872 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:37 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..943 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:25 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..943 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:05 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 5..947 1..943 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:23 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 1..943 1..943 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:03 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
zetaTry-RA 5..947 1..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:34:02 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11339186..11340128 1..943 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:34:02 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11339186..11340128 1..943 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:34:02 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11339186..11340128 1..943 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:05 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7226691..7227633 1..943 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:33 Download gff for RE60340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11340385..11341327 1..943 100   Minus

RE60340.hyp Sequence

Translation from 2 to 871

> RE60340.hyp
FPILLAFVSMSSSWIVGLLAFLVSLVALTQGLPLLEDLDEKSVPDGRIVG
GYATDIAQVPYQISLRYKGITTPENPFRHRCGGSIFNETTIVTAAHCVIG
TVASQYKVVAGTNFQTGSDGVITNVKEIVMHEGYYSGAAYNNDIAILFVD
PPLPLNNFTIKAIKLALEQPIEGTVSKVSGWGTTSPGGYSSNQLLAVDVP
IVSNELCDQDYEDFGDETYRITSAMLCAGKRGVGGADACQGDSGGPLAVR
DELYGVVSWGNSCALPNYPGVYANVAYLRPWIDAVLAGL*

RE60340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
zetaTry-PA 280 CG12387-PA 1..280 10..289 1468 100 Plus
etaTry-PA 262 CG12386-PA 25..254 45..282 549 48.3 Plus
betaTry-PB 253 CG18211-PB 1..249 18..282 471 44.4 Plus
betaTry-PA 253 CG18211-PA 1..249 18..282 471 44.4 Plus
gammaTry-PA 253 CG30028-PA 7..249 22..282 463 45.4 Plus

RE60340.pep Sequence

Translation from 29 to 871

> RE60340.pep
MSSSWIVGLLAFLVSLVALTQGLPLLEDLDEKSVPDGRIVGGYATDIAQV
PYQISLRYKGITTPENPFRHRCGGSIFNETTIVTAAHCVIGTVASQYKVV
AGTNFQTGSDGVITNVKEIVMHEGYYSGAAYNNDIAILFVDPPLPLNNFT
IKAIKLALEQPIEGTVSKVSGWGTTSPGGYSSNQLLAVDVPIVSNELCDQ
DYEDFGDETYRITSAMLCAGKRGVGGADACQGDSGGPLAVRDELYGVVSW
GNSCALPNYPGVYANVAYLRPWIDAVLAGL*

RE60340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12406-PA 285 GF12406-PA 1..279 1..280 1123 76.1 Plus
Dana\GF12405-PA 262 GF12405-PA 27..261 35..277 537 49.4 Plus
Dana\GF12407-PA 313 GF12407-PA 64..305 29..277 450 38.8 Plus
Dana\GF12402-PA 256 GF12402-PA 28..250 36..274 438 42.9 Plus
Dana\GF14668-PA 279 GF14668-PA 50..274 36..274 437 42 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\zetaTry-PA 281 GG22664-PA 3..281 2..280 1267 84.6 Plus
Dere\etaTry-PA 258 GG22663-PA 24..254 35..273 520 48.5 Plus
Dere\GG20381-PA 259 GG20381-PA 5..252 9..273 461 42.8 Plus
Dere\GG22665-PA 263 GG22665-PA 22..258 35..278 446 40 Plus
Dere\GG20193-PA 273 GG20193-PA 26..262 30..278 436 42.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22868-PA 268 GH22868-PA 17..268 16..280 790 60 Plus
Dgri\GH22923-PA 266 GH22923-PA 27..252 34..275 507 47.8 Plus
Dgri\GH22925-PA 254 GH22925-PA 6..249 12..273 470 45.2 Plus
Dgri\GH22926-PA 256 GH22926-PA 4..249 10..273 470 45.3 Plus
Dgri\GH22924-PA 256 GH22924-PA 4..249 10..273 457 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
zetaTry-PA 280 CG12387-PA 1..280 1..280 1468 100 Plus
etaTry-PA 262 CG12386-PA 25..254 36..273 549 48.3 Plus
betaTry-PB 253 CG18211-PB 1..249 9..273 471 44.4 Plus
betaTry-PA 253 CG18211-PA 1..249 9..273 471 44.4 Plus
gammaTry-PA 253 CG30028-PA 7..249 13..273 463 45.4 Plus
CG30025-PA 253 CG30025-PA 7..249 13..273 463 45.4 Plus
deltaTry-PA 253 CG12351-PA 7..249 13..273 463 45.4 Plus
CG30031-PA 253 CG30031-PA 7..249 13..273 463 45.4 Plus
alphaTry-PA 256 CG18444-PA 4..249 6..273 457 44.2 Plus
kappaTry-PC 263 CG12388-PC 22..258 35..278 456 40.8 Plus
lambdaTry-PA 272 CG12350-PA 5..261 9..278 456 41.9 Plus
Ser8-PA 260 CG4812-PA 4..253 9..273 455 42.7 Plus
CG7829-PA 253 CG7829-PA 18..249 29..277 435 41.4 Plus
epsilonTry-PA 256 CG18681-PA 28..250 36..274 432 42.9 Plus
CG31954-PA 277 CG31954-PA 48..271 36..273 422 42.1 Plus
CG6041-PA 308 CG6041-PA 1..269 1..273 409 36.9 Plus
CG17571-PB 258 CG17571-PB 4..251 9..273 407 41.2 Plus
CG17571-PA 258 CG17571-PA 4..251 9..273 407 41.2 Plus
CG32755-PA 315 CG32755-PA 37..278 38..280 403 37.5 Plus
Try29F-PD 267 CG9564-PD 39..264 36..276 392 40.3 Plus
Try29F-PC 267 CG9564-PC 39..264 36..276 392 40.3 Plus
CG8299-PA 260 CG8299-PA 1..253 17..274 383 37.5 Plus
CG6048-PA 362 CG6048-PA 7..284 9..273 381 35.3 Plus
thetaTry-PA 262 CG12385-PA 32..255 36..273 371 40 Plus
CG11192-PB 279 CG11192-PB 7..263 10..277 371 36.6 Plus
CG17239-PB 248 CG17239-PB 23..237 38..273 368 38.1 Plus
CG17239-PA 248 CG17239-PA 23..237 38..273 368 38.1 Plus
CG13430-PB 267 CG13430-PB 29..259 36..273 364 38.4 Plus
CG13430-PA 267 CG13430-PA 29..259 36..273 364 38.4 Plus
CG4914-PA 374 CG4914-PA 125..360 36..273 351 35.2 Plus
CG32271-PA 248 CG32271-PA 22..246 36..277 348 38.3 Plus
Ser12-PA 245 CG17240-PA 23..238 38..273 345 37.3 Plus
iotaTry-PA 252 CG7754-PA 6..245 16..273 344 37.5 Plus
CG34458-PA 257 CG34458-PA 29..251 36..273 344 33.3 Plus
lint-PB 1674 CG8213-PB 1425..1670 34..276 344 33.2 Plus
lint-PC 1693 CG8213-PC 1444..1689 34..276 344 33.2 Plus
CG3355-PA 314 CG3355-PA 75..302 38..273 343 37.5 Plus
Sb-PB 787 CG4316-PB 540..782 35..273 340 34.7 Plus
Sb-PA 787 CG4316-PA 540..782 35..273 340 34.7 Plus
CG32269-PB 332 CG32269-PB 108..330 38..278 339 36.4 Plus
CG32269-PA 332 CG32269-PA 108..330 38..278 339 36.4 Plus
CG16749-PA 265 CG16749-PA 28..257 37..273 338 33.7 Plus
CG7432-PB 721 CG7432-PB 463..715 27..273 338 35.8 Plus
CG11037-PA 292 CG11037-PA 42..288 19..280 334 33.2 Plus
CG11836-PI 281 CG11836-PI 44..274 38..277 333 36.5 Plus
CG11836-PJ 333 CG11836-PJ 96..326 38..277 333 36.5 Plus
CG33159-PA 257 CG33159-PA 25..240 38..267 331 34.1 Plus
CG4386-PA 372 CG4386-PA 126..354 38..273 329 35.2 Plus
CG18735-PA 364 CG18735-PA 82..311 38..273 328 35.9 Plus
CG8172-PD 371 CG8172-PD 125..367 38..278 328 33.7 Plus
CG3650-PA 249 CG3650-PA 25..243 38..273 320 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21247-PA 271 GI21247-PA 16..266 17..275 754 61.4 Plus
Dmoj\GI21246-PA 262 GI21246-PA 24..254 35..273 560 48.8 Plus
Dmoj\GI21249-PA 273 GI21249-PA 16..267 9..277 486 39.6 Plus
Dmoj\GI21243-PA 255 GI21243-PA 4..249 6..274 454 41.6 Plus
Dmoj\GI17775-PA 275 GI17775-PA 46..269 36..273 439 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17342-PA 280 GL17342-PA 16..275 17..278 1037 72.5 Plus
Dper\GL17341-PA 248 GL17341-PA 25..242 36..273 437 44.4 Plus
Dper\GL17338-PA 256 GL17338-PA 1..250 9..274 432 40.9 Plus
Dper\GL17339-PA 256 GL17339-PA 1..249 9..273 430 44 Plus
Dper\GL17143-PA 256 GL17143-PA 1..249 9..273 428 44.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11599-PA 280 GA11599-PA 16..275 17..278 1039 72.5 Plus
Dpse\GA11598-PA 262 GA11598-PA 25..254 36..273 522 47.9 Plus
Dpse\GA24219-PA 273 GA24219-PA 32..268 35..278 473 41.1 Plus
Dpse\GA11574-PA 269 GA11574-PA 1..253 9..273 459 41.2 Plus
Dpse\GA15051-PA 256 GA15051-PA 1..250 9..274 445 41.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20443-PA 280 GM20443-PA 1..280 1..280 1368 92.9 Plus
Dsec\GM20442-PA 426 GM20442-PA 188..418 35..273 535 48.5 Plus
Dsec\GM20444-PA 263 GM20444-PA 22..258 35..278 470 41.2 Plus
Dsec\GM21468-PA 260 GM21468-PA 27..253 31..273 432 43 Plus
Dsec\GM12217-PA 294 GM12217-PA 59..290 29..277 431 41 Plus
Dsec\GM20442-PA 426 GM20442-PA 17..178 72..255 211 35.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25910-PA 280 GD25910-PA 1..280 1..280 1412 96.1 Plus
Dsim\GD25909-PA 262 GD25909-PA 22..254 33..273 539 48.6 Plus
Dsim\GD10792-PA 272 GD10792-PA 5..261 9..278 436 41.2 Plus
Dsim\GD15412-PA 260 GD15412-PA 27..253 31..273 432 43 Plus
Dsim\GD15391-PA 253 GD15391-PA 1..249 9..273 430 44 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20852-PA 267 GJ20852-PA 22..266 26..277 752 62.3 Plus
Dvir\GJ20851-PA 269 GJ20851-PA 30..261 35..273 512 45 Plus
Dvir\GJ21494-PA 265 GJ21494-PA 5..251 6..275 486 44.2 Plus
Dvir\GJ20853-PA 266 GJ20853-PA 25..260 35..277 438 39.8 Plus
Dvir\Try1-PA 256 GJ21500-PA 4..249 10..273 424 45.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19456-PA 283 GK19456-PA 31..275 36..280 837 64.5 Plus
Dwil\GK19455-PA 280 GK19455-PA 9..271 12..275 787 61.7 Plus
Dwil\GK19332-PA 264 GK19332-PA 25..255 37..274 516 45.2 Plus
Dwil\GK19007-PA 261 GK19007-PA 8..256 11..275 472 43.2 Plus
Dwil\GK21994-PA 256 GK21994-PA 1..250 9..274 449 43.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13538-PA 280 GE13538-PA 1..280 1..280 1347 90.4 Plus
Dyak\GE13537-PA 262 GE13537-PA 24..254 35..273 527 47.7 Plus
Dyak\kappaTry-PA 263 GE13020-PA 22..258 35..278 474 42 Plus
Dyak\GE12880-PA 272 GE12880-PA 5..261 9..278 455 42.1 Plus
Dyak\GE12542-PA 259 GE12542-PA 5..252 10..273 452 41.9 Plus