Clone RE60377 Report

Search the DGRC for RE60377

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:603
Well:77
Vector:pFlc-1
Associated Gene/Transcriptstet-RA
Protein status:RE60377.pep: gold
Preliminary Size:1584
Sequenced Size:1900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12083 2002-01-01 Sim4 clustering to Release 2
CG33166 2002-05-14 Blastp of sequenced clone
stet 2008-04-29 Release 5.5 accounting
stet 2008-08-15 Release 5.9 accounting
stet 2008-12-18 5.12 accounting

Clone Sequence Records

RE60377.complete Sequence

1900 bp (1900 high quality bases) assembled on 2002-05-14

GenBank Submission: AY119150

> RE60377.complete
GCAGAGCGCGAATAGAAACTTCGGCACGCTGGCGGGAAAGTTGTAAATTC
GGTCGTTTTTTCAATGTTAAGTGTTCATTGTGTTTAAACTTTAATCGTAA
TGAAAAATTTATAAGGATTATTAAGTTAATAAAGCAGGAACGCTGCTGTT
TCGTTGCATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTACACC
ATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCTAAAC
GAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCATGGAGATCCT
GCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGCTGTC
CGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTTCTTT
GTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCATACC
CTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATCTGGC
GCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGGTTTT
AACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTCATGG
TTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGAAGCC
TGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAGTGGT
GGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCTTCTCAACTA
TCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTCTGGTCTTCG
TTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCTGGCGACGAA
CTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCAGGCGGAAAC
GGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCATTGCTGGCC
TAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAGCTCCACGAG
CAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCTGGTGGTCTT
CGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCAATATACGCG
TGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTCCAGGTGTGA
AATCCCAGGAGGATAAGCGATAGGGATGATCAGAATTCGATCCTTGTTTC
GTATTTAATTGATATTTTGCTTACATTTTGTTCATTGCGTTACATTGAAG
TTTTTATTGTTTTTGGACGTCGATTAAGTTTCGCGTTTATTGTTTTTTTA
ACCCTATATCTGTAGGATCAGATATGAATATCTCATTGTTTGCTTACGTG
TCATGCGACGTAAATTATTTTGTTTTGTTTGCTAGTTAAGTACAAACATA
TTGTAAGAATCGTAAGAGAATATTTACAACAAATCGAACTGATTAGGTGT
AACATAATGCTCAAGGAATTACACATTTTCTACATATTATTAAGATTAAC
CAGAAGAACCAGAAGACTTTATATGGGAGCTAATAATGAATAAAACTCCA
CAAGCTGTAAATTAGAATTACAAATATATGTATATGCGTGTGCTTTAAGG
ACTATATGGAAACCGATATATTGGCAATGCAAGCGATTTATTTTAAATTT
TACAGGCCTTATAGCAATTGAGATTACTACCTCAACAACAACTGATAAAT
AATATTAAATATATTCCAAAATGTTGAAGTAAATCGGTTTCAATTTGATA
TAGCCGAGCGTAACTGAGCACTGCCAGCTTTAAGAAATCAATTACGACCA
AGCACCAACAGAGTAAAGCATAAATTTACATATTTTCTATTTACACATTT
TGTTTAACTTGTAAATAAAAGTACATTTAAATTTTAAAAAAAAAAAAAAA

RE60377.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1928 stet-RA 35..1928 1..1894 9440 99.8 Plus
stet.a 1964 stet.a 247..1964 158..1875 8560 99.8 Plus
stet-RB 2534 stet-RB 817..2534 158..1875 8560 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1474962..1476050 1883..800 5225 99.1 Minus
chr3L 24539361 chr3L 1476109..1476522 800..387 2040 99.5 Minus
chr3L 24539361 chr3L 1476577..1476814 395..158 1145 98.7 Minus
chr3L 24539361 chr3L 1478302..1478458 157..1 770 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1475429..1476523 1894..800 5445 99.8 Minus
3L 28110227 3L 1476582..1476995 800..387 2070 100 Minus
3L 28110227 3L 1477050..1477287 395..158 1160 99.2 Minus
3L 28110227 3L 1478772..1478928 157..1 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1475429..1476523 1894..800 5445 99.8 Minus
3L 28103327 3L 1476582..1476995 800..387 2070 100 Minus
3L 28103327 3L 1477050..1477287 395..158 1160 99.1 Minus
3L 28103327 3L 1478772..1478928 157..1 785 100 Minus
Blast to na_te.dros performed 2019-03-15 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 524..644 1315..1195 153 62.6 Minus

RE60377.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:27:04 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1474960..1476049 801..1885 98 <- Minus
chr3L 1476109..1476520 389..800 99 <- Minus
chr3L 1476584..1476814 158..388 99 <- Minus
chr3L 1478302..1478458 1..157 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:55 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 1..993 158..1150 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:14 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 1..993 158..1150 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:12:46 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 458..1458 147..1150 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:55 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 1..993 158..1150 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:28 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 458..1458 147..1150 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:21 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 4..1888 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:14 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 4..1888 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:46 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 14..1898 1..1885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:55 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 4..1888 1..1885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:28 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 14..1898 1..1885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:04 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1475438..1476522 801..1885 99 <- Minus
3L 1476582..1476993 389..800 100 <- Minus
3L 1477057..1477287 158..388 100 <- Minus
3L 1478772..1478928 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:04 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1475438..1476522 801..1885 99 <- Minus
3L 1476582..1476993 389..800 100 <- Minus
3L 1477057..1477287 158..388 100 <- Minus
3L 1478772..1478928 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:04 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1475438..1476522 801..1885 99 <- Minus
3L 1476582..1476993 389..800 100 <- Minus
3L 1477057..1477287 158..388 100 <- Minus
3L 1478772..1478928 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:46 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1475438..1476522 801..1885 99 <- Minus
arm_3L 1476582..1476993 389..800 100 <- Minus
arm_3L 1477057..1477287 158..388 100 <- Minus
arm_3L 1478772..1478928 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:15 Download gff for RE60377.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1475438..1476522 801..1885 99 <- Minus
3L 1476582..1476993 389..800 100 <- Minus
3L 1477057..1477287 158..388 100 <- Minus
3L 1478772..1478928 1..157 100   Minus

RE60377.pep Sequence

Translation from 157 to 1149

> RE60377.pep
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*

RE60377.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25034-PA 485 GF25034-PA 156..485 1..330 1628 91.8 Plus
Dana\rho-PA 365 GF24766-PA 112..364 67..330 657 49.1 Plus
Dana\GF24760-PA 352 GF24760-PA 106..326 66..306 596 50.2 Plus
Dana\GF21300-PA 418 GF21300-PA 170..406 57..304 485 38 Plus
Dana\GF15679-PA 260 GF15679-PA 72..256 67..278 268 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14598-PA 485 GG14598-PA 156..485 1..330 1725 98.2 Plus
Dere\GG14792-PA 353 GG14792-PA 76..352 42..330 659 47.1 Plus
Dere\GG14787-PA 349 GG14787-PA 105..346 66..328 552 47 Plus
Dere\GG18433-PA 417 GG18433-PA 169..405 57..304 481 37.9 Plus
Dere\GG10271-PA 263 GG10271-PA 72..254 67..276 264 29 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15206-PA 476 GH15206-PA 155..476 1..330 1486 82.6 Plus
Dgri\GH16240-PA 436 GH16240-PA 171..435 67..330 654 47.7 Plus
Dgri\GH16237-PA 321 GH16237-PA 61..294 52..306 639 49 Plus
Dgri\GH24104-PA 420 GH24104-PA 172..408 57..304 484 39.1 Plus
Dgri\GH11182-PA 229 GH11182-PA 2..229 12..275 271 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
stet-PA 330 CG33166-PA 1..330 1..330 1718 100 Plus
stet-PB 485 CG33166-PB 156..485 1..330 1718 100 Plus
rho-PB 355 CG1004-PB 102..354 67..330 662 48.5 Plus
rho-PA 355 CG1004-PA 102..354 67..330 662 48.5 Plus
ru-PA 341 CG1214-PA 97..315 66..306 626 51.9 Plus
rho-4-PB 417 CG1697-PB 169..405 57..304 492 37.6 Plus
rho-4-PA 417 CG1697-PA 169..405 57..304 492 37.6 Plus
rho-6-PB 263 CG17212-PB 72..254 67..276 264 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16724-PA 476 GI16724-PA 155..476 1..330 1514 84.2 Plus
Dmoj\GI16668-PA 398 GI16668-PA 142..397 67..330 665 48.9 Plus
Dmoj\GI16665-PA 311 GI16665-PA 35..284 29..306 558 48.2 Plus
Dmoj\GI14374-PA 420 GI14374-PA 172..408 57..304 491 39.1 Plus
Dmoj\GI15831-PA 242 GI15831-PA 9..238 22..278 259 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22587-PA 487 GL22587-PA 157..487 1..330 1577 88.5 Plus
Dper\GL22503-PA 344 GL22503-PA 80..318 31..306 638 47.1 Plus
Dper\GL26733-PA 417 GL26733-PA 169..405 57..304 490 38.4 Plus
Dper\GL22508-PA 342 GL22508-PA 134..341 96..330 455 41.9 Plus
Dper\GL19515-PA 204 GL19515-PA 30..203 85..280 146 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17336-PA 487 GA17336-PA 157..487 1..330 1563 87.6 Plus
Dpse\rho-PA 365 GA10027-PA 134..364 96..330 643 52.8 Plus
Dpse\GA11431-PA 336 GA11431-PA 72..310 31..306 634 47.1 Plus
Dpse\GA14244-PA 417 GA14244-PA 169..405 57..304 490 38.4 Plus
Dpse\GA14394-PA 252 GA14394-PA 65..251 67..280 236 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14213-PA 485 GM14213-PA 156..485 1..330 1743 99.1 Plus
Dsec\ve-PA 364 GM14413-PA 87..363 42..330 659 47.1 Plus
Dsec\GM14406-PA 344 GM14406-PA 100..341 66..328 563 48.1 Plus
Dsec\GM13096-PA 417 GM13096-PA 169..405 57..304 480 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13475-PA 485 GD13475-PA 156..485 1..330 1747 99.4 Plus
Dsim\GD13619-PA 355 GD13619-PA 78..354 42..330 658 47.1 Plus
Dsim\GD13615-PA 344 GD13615-PA 100..341 66..328 572 48.5 Plus
Dsim\GD17034-PA 382 GD17034-PA 134..370 57..304 482 37.6 Plus
Dsim\GD22127-PA 267 GD22127-PA 76..258 67..276 256 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12468-PA 476 GJ12468-PA 155..476 1..330 1510 83.6 Plus
Dvir\rho-PA 401 GJ12920-PA 145..400 67..330 666 48.5 Plus
Dvir\GJ12917-PA 314 GJ12917-PA 23..287 20..306 595 45.6 Plus
Dvir\GJ10319-PA 246 GJ10319-PA 2..235 12..277 285 28.9 Plus
Dvir\GJ19413-PA 350 GJ19413-PA 172..292 57..171 177 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17206-PA 475 GK17206-PA 154..475 1..330 1505 84.2 Plus
Dwil\GK16984-PA 391 GK16984-PA 137..390 67..330 658 49.1 Plus
Dwil\GK16979-PA 315 GK16979-PA 36..289 29..306 571 46 Plus
Dwil\GK15930-PA 418 GK15930-PA 170..406 57..304 482 38.4 Plus
Dwil\GK14633-PA 257 GK14633-PA 71..215 67..224 270 34.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20958-PA 485 GE20958-PA 156..485 1..330 1733 98.5 Plus
Dyak\GE21154-PA 355 GE21154-PA 78..354 42..330 661 47.1 Plus
Dyak\GE21150-PA 343 GE21150-PA 99..317 66..306 570 50.6 Plus
Dyak\GE15951-PA 417 GE15951-PA 169..405 57..304 481 37.9 Plus
Dyak\GE12391-PA 263 GE12391-PA 72..249 67..271 242 29.3 Plus

RE60377.hyp Sequence

Translation from 157 to 1149

> RE60377.hyp
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*

RE60377.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
stet-PA 330 CG33166-PA 1..330 1..330 1718 100 Plus
stet-PB 485 CG33166-PB 156..485 1..330 1718 100 Plus
rho-PB 355 CG1004-PB 102..354 67..330 662 48.5 Plus
rho-PA 355 CG1004-PA 102..354 67..330 662 48.5 Plus
ru-PA 341 CG1214-PA 97..315 66..306 626 51.9 Plus