BDGP Sequence Production Resources |
Search the DGRC for RE60377
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 603 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | stet-RA |
Protein status: | RE60377.pep: gold |
Preliminary Size: | 1584 |
Sequenced Size: | 1900 |
Gene | Date | Evidence |
---|---|---|
CG12083 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33166 | 2002-05-14 | Blastp of sequenced clone |
stet | 2008-04-29 | Release 5.5 accounting |
stet | 2008-08-15 | Release 5.9 accounting |
stet | 2008-12-18 | 5.12 accounting |
1900 bp (1900 high quality bases) assembled on 2002-05-14
GenBank Submission: AY119150
> RE60377.complete GCAGAGCGCGAATAGAAACTTCGGCACGCTGGCGGGAAAGTTGTAAATTC GGTCGTTTTTTCAATGTTAAGTGTTCATTGTGTTTAAACTTTAATCGTAA TGAAAAATTTATAAGGATTATTAAGTTAATAAAGCAGGAACGCTGCTGTT TCGTTGCATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTACACC ATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCTAAAC GAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCATGGAGATCCT GCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGCTGTC CGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTTCTTT GTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCATACC CTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATCTGGC GCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGGTTTT AACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTCATGG TTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGAAGCC TGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAGTGGT GGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCTTCTCAACTA TCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTCTGGTCTTCG TTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCTGGCGACGAA CTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCAGGCGGAAAC GGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCATTGCTGGCC TAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAGCTCCACGAG CAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCTGGTGGTCTT CGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCAATATACGCG TGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTCCAGGTGTGA AATCCCAGGAGGATAAGCGATAGGGATGATCAGAATTCGATCCTTGTTTC GTATTTAATTGATATTTTGCTTACATTTTGTTCATTGCGTTACATTGAAG TTTTTATTGTTTTTGGACGTCGATTAAGTTTCGCGTTTATTGTTTTTTTA ACCCTATATCTGTAGGATCAGATATGAATATCTCATTGTTTGCTTACGTG TCATGCGACGTAAATTATTTTGTTTTGTTTGCTAGTTAAGTACAAACATA TTGTAAGAATCGTAAGAGAATATTTACAACAAATCGAACTGATTAGGTGT AACATAATGCTCAAGGAATTACACATTTTCTACATATTATTAAGATTAAC CAGAAGAACCAGAAGACTTTATATGGGAGCTAATAATGAATAAAACTCCA CAAGCTGTAAATTAGAATTACAAATATATGTATATGCGTGTGCTTTAAGG ACTATATGGAAACCGATATATTGGCAATGCAAGCGATTTATTTTAAATTT TACAGGCCTTATAGCAATTGAGATTACTACCTCAACAACAACTGATAAAT AATATTAAATATATTCCAAAATGTTGAAGTAAATCGGTTTCAATTTGATA TAGCCGAGCGTAACTGAGCACTGCCAGCTTTAAGAAATCAATTACGACCA AGCACCAACAGAGTAAAGCATAAATTTACATATTTTCTATTTACACATTT TGTTTAACTTGTAAATAAAAGTACATTTAAATTTTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1474962..1476050 | 1883..800 | 5225 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 1476109..1476522 | 800..387 | 2040 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 1476577..1476814 | 395..158 | 1145 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 1478302..1478458 | 157..1 | 770 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1475429..1476523 | 1894..800 | 5445 | 99.8 | Minus |
3L | 28110227 | 3L | 1476582..1476995 | 800..387 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477287 | 395..158 | 1160 | 99.2 | Minus |
3L | 28110227 | 3L | 1478772..1478928 | 157..1 | 785 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1475429..1476523 | 1894..800 | 5445 | 99.8 | Minus |
3L | 28103327 | 3L | 1476582..1476995 | 800..387 | 2070 | 100 | Minus |
3L | 28103327 | 3L | 1477050..1477287 | 395..158 | 1160 | 99.1 | Minus |
3L | 28103327 | 3L | 1478772..1478928 | 157..1 | 785 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 524..644 | 1315..1195 | 153 | 62.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1474960..1476049 | 801..1885 | 98 | <- | Minus |
chr3L | 1476109..1476520 | 389..800 | 99 | <- | Minus |
chr3L | 1476584..1476814 | 158..388 | 99 | <- | Minus |
chr3L | 1478302..1478458 | 1..157 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 1..993 | 158..1150 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 1..993 | 158..1150 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RB | 458..1458 | 147..1150 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 1..993 | 158..1150 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RB | 458..1458 | 147..1150 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 4..1888 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 4..1888 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 14..1898 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 4..1888 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stet-RA | 14..1898 | 1..1885 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1475438..1476522 | 801..1885 | 99 | <- | Minus |
3L | 1476582..1476993 | 389..800 | 100 | <- | Minus |
3L | 1477057..1477287 | 158..388 | 100 | <- | Minus |
3L | 1478772..1478928 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1475438..1476522 | 801..1885 | 99 | <- | Minus |
3L | 1476582..1476993 | 389..800 | 100 | <- | Minus |
3L | 1477057..1477287 | 158..388 | 100 | <- | Minus |
3L | 1478772..1478928 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1475438..1476522 | 801..1885 | 99 | <- | Minus |
3L | 1476582..1476993 | 389..800 | 100 | <- | Minus |
3L | 1477057..1477287 | 158..388 | 100 | <- | Minus |
3L | 1478772..1478928 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1475438..1476522 | 801..1885 | 99 | <- | Minus |
arm_3L | 1476582..1476993 | 389..800 | 100 | <- | Minus |
arm_3L | 1477057..1477287 | 158..388 | 100 | <- | Minus |
arm_3L | 1478772..1478928 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1475438..1476522 | 801..1885 | 99 | <- | Minus |
3L | 1476582..1476993 | 389..800 | 100 | <- | Minus |
3L | 1477057..1477287 | 158..388 | 100 | <- | Minus |
3L | 1478772..1478928 | 1..157 | 100 | Minus |
Translation from 157 to 1149
> RE60377.pep MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25034-PA | 485 | GF25034-PA | 156..485 | 1..330 | 1628 | 91.8 | Plus |
Dana\rho-PA | 365 | GF24766-PA | 112..364 | 67..330 | 657 | 49.1 | Plus |
Dana\GF24760-PA | 352 | GF24760-PA | 106..326 | 66..306 | 596 | 50.2 | Plus |
Dana\GF21300-PA | 418 | GF21300-PA | 170..406 | 57..304 | 485 | 38 | Plus |
Dana\GF15679-PA | 260 | GF15679-PA | 72..256 | 67..278 | 268 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14598-PA | 485 | GG14598-PA | 156..485 | 1..330 | 1725 | 98.2 | Plus |
Dere\GG14792-PA | 353 | GG14792-PA | 76..352 | 42..330 | 659 | 47.1 | Plus |
Dere\GG14787-PA | 349 | GG14787-PA | 105..346 | 66..328 | 552 | 47 | Plus |
Dere\GG18433-PA | 417 | GG18433-PA | 169..405 | 57..304 | 481 | 37.9 | Plus |
Dere\GG10271-PA | 263 | GG10271-PA | 72..254 | 67..276 | 264 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15206-PA | 476 | GH15206-PA | 155..476 | 1..330 | 1486 | 82.6 | Plus |
Dgri\GH16240-PA | 436 | GH16240-PA | 171..435 | 67..330 | 654 | 47.7 | Plus |
Dgri\GH16237-PA | 321 | GH16237-PA | 61..294 | 52..306 | 639 | 49 | Plus |
Dgri\GH24104-PA | 420 | GH24104-PA | 172..408 | 57..304 | 484 | 39.1 | Plus |
Dgri\GH11182-PA | 229 | GH11182-PA | 2..229 | 12..275 | 271 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stet-PA | 330 | CG33166-PA | 1..330 | 1..330 | 1718 | 100 | Plus |
stet-PB | 485 | CG33166-PB | 156..485 | 1..330 | 1718 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 102..354 | 67..330 | 662 | 48.5 | Plus |
rho-PA | 355 | CG1004-PA | 102..354 | 67..330 | 662 | 48.5 | Plus |
ru-PA | 341 | CG1214-PA | 97..315 | 66..306 | 626 | 51.9 | Plus |
rho-4-PB | 417 | CG1697-PB | 169..405 | 57..304 | 492 | 37.6 | Plus |
rho-4-PA | 417 | CG1697-PA | 169..405 | 57..304 | 492 | 37.6 | Plus |
rho-6-PB | 263 | CG17212-PB | 72..254 | 67..276 | 264 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16724-PA | 476 | GI16724-PA | 155..476 | 1..330 | 1514 | 84.2 | Plus |
Dmoj\GI16668-PA | 398 | GI16668-PA | 142..397 | 67..330 | 665 | 48.9 | Plus |
Dmoj\GI16665-PA | 311 | GI16665-PA | 35..284 | 29..306 | 558 | 48.2 | Plus |
Dmoj\GI14374-PA | 420 | GI14374-PA | 172..408 | 57..304 | 491 | 39.1 | Plus |
Dmoj\GI15831-PA | 242 | GI15831-PA | 9..238 | 22..278 | 259 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22587-PA | 487 | GL22587-PA | 157..487 | 1..330 | 1577 | 88.5 | Plus |
Dper\GL22503-PA | 344 | GL22503-PA | 80..318 | 31..306 | 638 | 47.1 | Plus |
Dper\GL26733-PA | 417 | GL26733-PA | 169..405 | 57..304 | 490 | 38.4 | Plus |
Dper\GL22508-PA | 342 | GL22508-PA | 134..341 | 96..330 | 455 | 41.9 | Plus |
Dper\GL19515-PA | 204 | GL19515-PA | 30..203 | 85..280 | 146 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17336-PA | 487 | GA17336-PA | 157..487 | 1..330 | 1563 | 87.6 | Plus |
Dpse\rho-PA | 365 | GA10027-PA | 134..364 | 96..330 | 643 | 52.8 | Plus |
Dpse\GA11431-PA | 336 | GA11431-PA | 72..310 | 31..306 | 634 | 47.1 | Plus |
Dpse\GA14244-PA | 417 | GA14244-PA | 169..405 | 57..304 | 490 | 38.4 | Plus |
Dpse\GA14394-PA | 252 | GA14394-PA | 65..251 | 67..280 | 236 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14213-PA | 485 | GM14213-PA | 156..485 | 1..330 | 1743 | 99.1 | Plus |
Dsec\ve-PA | 364 | GM14413-PA | 87..363 | 42..330 | 659 | 47.1 | Plus |
Dsec\GM14406-PA | 344 | GM14406-PA | 100..341 | 66..328 | 563 | 48.1 | Plus |
Dsec\GM13096-PA | 417 | GM13096-PA | 169..405 | 57..304 | 480 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13475-PA | 485 | GD13475-PA | 156..485 | 1..330 | 1747 | 99.4 | Plus |
Dsim\GD13619-PA | 355 | GD13619-PA | 78..354 | 42..330 | 658 | 47.1 | Plus |
Dsim\GD13615-PA | 344 | GD13615-PA | 100..341 | 66..328 | 572 | 48.5 | Plus |
Dsim\GD17034-PA | 382 | GD17034-PA | 134..370 | 57..304 | 482 | 37.6 | Plus |
Dsim\GD22127-PA | 267 | GD22127-PA | 76..258 | 67..276 | 256 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12468-PA | 476 | GJ12468-PA | 155..476 | 1..330 | 1510 | 83.6 | Plus |
Dvir\rho-PA | 401 | GJ12920-PA | 145..400 | 67..330 | 666 | 48.5 | Plus |
Dvir\GJ12917-PA | 314 | GJ12917-PA | 23..287 | 20..306 | 595 | 45.6 | Plus |
Dvir\GJ10319-PA | 246 | GJ10319-PA | 2..235 | 12..277 | 285 | 28.9 | Plus |
Dvir\GJ19413-PA | 350 | GJ19413-PA | 172..292 | 57..171 | 177 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17206-PA | 475 | GK17206-PA | 154..475 | 1..330 | 1505 | 84.2 | Plus |
Dwil\GK16984-PA | 391 | GK16984-PA | 137..390 | 67..330 | 658 | 49.1 | Plus |
Dwil\GK16979-PA | 315 | GK16979-PA | 36..289 | 29..306 | 571 | 46 | Plus |
Dwil\GK15930-PA | 418 | GK15930-PA | 170..406 | 57..304 | 482 | 38.4 | Plus |
Dwil\GK14633-PA | 257 | GK14633-PA | 71..215 | 67..224 | 270 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20958-PA | 485 | GE20958-PA | 156..485 | 1..330 | 1733 | 98.5 | Plus |
Dyak\GE21154-PA | 355 | GE21154-PA | 78..354 | 42..330 | 661 | 47.1 | Plus |
Dyak\GE21150-PA | 343 | GE21150-PA | 99..317 | 66..306 | 570 | 50.6 | Plus |
Dyak\GE15951-PA | 417 | GE15951-PA | 169..405 | 57..304 | 481 | 37.9 | Plus |
Dyak\GE12391-PA | 263 | GE12391-PA | 72..249 | 67..271 | 242 | 29.3 | Plus |
Translation from 157 to 1149
> RE60377.hyp MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI AFNIMNGFAMFNIRVEKIRVTETIFNDFQV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stet-PA | 330 | CG33166-PA | 1..330 | 1..330 | 1718 | 100 | Plus |
stet-PB | 485 | CG33166-PB | 156..485 | 1..330 | 1718 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 102..354 | 67..330 | 662 | 48.5 | Plus |
rho-PA | 355 | CG1004-PA | 102..354 | 67..330 | 662 | 48.5 | Plus |
ru-PA | 341 | CG1214-PA | 97..315 | 66..306 | 626 | 51.9 | Plus |