BDGP Sequence Production Resources |
Search the DGRC for RE60387
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 603 |
Well: | 87 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ipp-RA |
Protein status: | RE60387.pep: gold |
Preliminary Size: | 1440 |
Sequenced Size: | 1412 |
Gene | Date | Evidence |
---|---|---|
CG3028 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3028 | 2002-04-26 | Blastp of sequenced clone |
CG3028 | 2003-01-01 | Sim4 clustering to Release 3 |
Ipp | 2008-04-29 | Release 5.5 accounting |
Ipp | 2008-08-15 | Release 5.9 accounting |
Ipp | 2008-12-18 | 5.12 accounting |
1412 bp (1412 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113524
> RE60387.complete AAAAAAAAATACCGAACAAAAAATCACAGCTGGCGTGAAAAAAGGAATAA AATTAGAAGAAACCATAAAAGTGCGGAAATGAAAATGGAGCTCAAATAGG CGACAGACGGCAGCTGGTGGAACAGGATGAGCGGCGTGGAGGAGCAGGCG AGTCTGCTGCGCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGC CAGGATATGTCGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGA AGATCGGATCCGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTG GCCGATGTGCTCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTT TCCTGCCATGAAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCA ACCAACTGGGCGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGAC ACCGCCGCCTGTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAG TGCTCTGGCCACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGC TGGGCGAGATTGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGC ATCTGGATCGATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACAC CATGTTCACCGACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCA CCGTGCTAATTGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGA GTGGTGGCTCAACCGTTCGGGGAGAAGCTGGAGGAGAACGTGTACAGCTC CTCGATGTTCTGGGGCGTCTGCCTGCCGACGGTAAGGGCACACAACTGCG ACTTTGAGGCGCGCGATGAGAACCGCCGTTTGGGCATCTTCTCCAGCTCG GAACAGTCCGATATCCTTCAGCGTTTCCTCGATCTGGGCTACGAGTTTGC ATTCTCCGCCGGTGCTGGACATAAGGCCTTGAAGGTGATTACCCACGAGG TGGATGTGTATCTGCTTAGCAAAGGCTCCACCTTCAAGTGGGACACGTGT GCTCCGCAAGCCATACTCCGTGCGCTCGGCGGAGATGTGCTGGACTATGC GGCCAGTGTGGCGGAGCAAAAGGCAGTGCCATTGAAGTACCTGATTGAGG ATGCTGAAGCCGATGCCGATTGGAAGCGAAACGCGGGTGGTATAATCTCT GTGCGCAATGTCGATGTTGTGGATGAGCTGCTGGCCAAATTGGCCGAGCA ATGAGTGTTGTTATTATGTTATTTGTTGTAAACCCATTATTGCTGTTGTA ATTGATTTGATGTAATTGCACTACGAGTCAGTCGAATTTGTAGGCATAGA AACTACTACAAGAAAATTTGCTAATAAATGAAACCGGCGAACGTGCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ipp-RA | 1567 | Ipp-RA | 48..1445 | 3..1400 | 6975 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 713..656 | 125 | 72.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9783706..9784324 | 1..619 | 99 | -> | Plus |
chr3R | 9784609..9785384 | 620..1396 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 1..1128 | 127..1254 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 1..1128 | 127..1254 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 1..1128 | 127..1254 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 1..1128 | 127..1254 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 1..1128 | 127..1254 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 46..1440 | 1..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 46..1440 | 1..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 46..1440 | 1..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 46..1440 | 1..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ipp-RA | 8..1402 | 1..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13958796..13959414 | 1..619 | 99 | -> | Plus |
3R | 13959699..13960474 | 620..1396 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13958796..13959414 | 1..619 | 99 | -> | Plus |
3R | 13959699..13960474 | 620..1396 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13958796..13959414 | 1..619 | 99 | -> | Plus |
3R | 13959699..13960474 | 620..1396 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9784518..9785136 | 1..619 | 99 | -> | Plus |
arm_3R | 9785421..9786196 | 620..1396 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13699627..13700245 | 1..619 | 99 | -> | Plus |
3R | 13700530..13701305 | 620..1396 | 99 | Plus |
Translation from 126 to 1253
> RE60387.pep MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK RNAGGIISVRNVDVVDELLAKLAEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16228-PA | 374 | GF16228-PA | 1..374 | 1..375 | 1692 | 84.5 | Plus |
Dana\GF18667-PA | 304 | GF18667-PA | 111..258 | 159..323 | 163 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19895-PA | 374 | GG19895-PA | 1..374 | 1..375 | 1881 | 94.9 | Plus |
Dere\GG11697-PA | 306 | GG11697-PA | 113..256 | 159..319 | 160 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14420-PA | 374 | GH14420-PA | 1..374 | 4..375 | 1322 | 65.9 | Plus |
Dgri\GH19967-PA | 306 | GH19967-PA | 113..260 | 159..323 | 156 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ipp-PA | 375 | CG3028-PA | 1..375 | 1..375 | 1907 | 100 | Plus |
CG7789-PA | 306 | CG7789-PA | 113..256 | 159..319 | 157 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10045-PA | 372 | GI10045-PA | 3..372 | 6..375 | 1439 | 71 | Plus |
Dmoj\GI22044-PA | 308 | GI22044-PA | 113..260 | 159..323 | 152 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24229-PA | 372 | GL24229-PA | 2..372 | 3..375 | 1661 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15747-PA | 372 | GA15747-PA | 2..372 | 3..375 | 1656 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24144-PA | 373 | GM24144-PA | 1..373 | 1..375 | 1922 | 97.6 | Plus |
Dsec\GM12826-PA | 306 | GM12826-PA | 113..256 | 159..319 | 162 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18939-PA | 362 | GD18939-PA | 1..362 | 1..375 | 1845 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22570-PA | 376 | GJ22570-PA | 3..376 | 6..375 | 1452 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22680-PA | 372 | GK22680-PA | 6..372 | 5..375 | 1528 | 79 | Plus |
Translation from 126 to 1253
> RE60387.hyp MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK RNAGGIISVRNVDVVDELLAKLAEQ*