Clone RE60387 Report

Search the DGRC for RE60387

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:603
Well:87
Vector:pFlc-1
Associated Gene/TranscriptIpp-RA
Protein status:RE60387.pep: gold
Preliminary Size:1440
Sequenced Size:1412

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3028 2002-01-01 Sim4 clustering to Release 2
CG3028 2002-04-26 Blastp of sequenced clone
CG3028 2003-01-01 Sim4 clustering to Release 3
Ipp 2008-04-29 Release 5.5 accounting
Ipp 2008-08-15 Release 5.9 accounting
Ipp 2008-12-18 5.12 accounting

Clone Sequence Records

RE60387.complete Sequence

1412 bp (1412 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113524

> RE60387.complete
AAAAAAAAATACCGAACAAAAAATCACAGCTGGCGTGAAAAAAGGAATAA
AATTAGAAGAAACCATAAAAGTGCGGAAATGAAAATGGAGCTCAAATAGG
CGACAGACGGCAGCTGGTGGAACAGGATGAGCGGCGTGGAGGAGCAGGCG
AGTCTGCTGCGCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGC
CAGGATATGTCGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGA
AGATCGGATCCGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTG
GCCGATGTGCTCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTT
TCCTGCCATGAAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCA
ACCAACTGGGCGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGAC
ACCGCCGCCTGTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAG
TGCTCTGGCCACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGC
TGGGCGAGATTGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGC
ATCTGGATCGATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACAC
CATGTTCACCGACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCA
CCGTGCTAATTGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGA
GTGGTGGCTCAACCGTTCGGGGAGAAGCTGGAGGAGAACGTGTACAGCTC
CTCGATGTTCTGGGGCGTCTGCCTGCCGACGGTAAGGGCACACAACTGCG
ACTTTGAGGCGCGCGATGAGAACCGCCGTTTGGGCATCTTCTCCAGCTCG
GAACAGTCCGATATCCTTCAGCGTTTCCTCGATCTGGGCTACGAGTTTGC
ATTCTCCGCCGGTGCTGGACATAAGGCCTTGAAGGTGATTACCCACGAGG
TGGATGTGTATCTGCTTAGCAAAGGCTCCACCTTCAAGTGGGACACGTGT
GCTCCGCAAGCCATACTCCGTGCGCTCGGCGGAGATGTGCTGGACTATGC
GGCCAGTGTGGCGGAGCAAAAGGCAGTGCCATTGAAGTACCTGATTGAGG
ATGCTGAAGCCGATGCCGATTGGAAGCGAAACGCGGGTGGTATAATCTCT
GTGCGCAATGTCGATGTTGTGGATGAGCTGCTGGCCAAATTGGCCGAGCA
ATGAGTGTTGTTATTATGTTATTTGTTGTAAACCCATTATTGCTGTTGTA
ATTGATTTGATGTAATTGCACTACGAGTCAGTCGAATTTGTAGGCATAGA
AACTACTACAAGAAAATTTGCTAATAAATGAAACCGGCGAACGTGCAAAA
AAAAAAAAAAAA

RE60387.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ipp-RA 1567 Ipp-RA 48..1445 3..1400 6975 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9784608..9785384 619..1395 3885 100 Plus
chr3R 27901430 chr3R 9783708..9784324 3..619 3085 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13959698..13960479 619..1400 3895 99.9 Plus
3R 32079331 3R 13958798..13959414 3..619 3085 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13700529..13701310 619..1400 3895 99.8 Plus
3R 31820162 3R 13699629..13700245 3..619 3085 100 Plus
Blast to na_te.dros performed 2019-03-16 23:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1307..1363 713..656 125 72.9 Minus

RE60387.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:26:45 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9783706..9784324 1..619 99 -> Plus
chr3R 9784609..9785384 620..1396 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:27:56 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 1..1128 127..1254 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:20 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 1..1128 127..1254 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:35 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 1..1128 127..1254 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:09 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 1..1128 127..1254 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:24 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 1..1128 127..1254 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:30 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 46..1440 1..1395 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:20 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 46..1440 1..1395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:35 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 46..1440 1..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:09 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 46..1440 1..1395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:24 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
Ipp-RA 8..1402 1..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:45 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13958796..13959414 1..619 99 -> Plus
3R 13959699..13960474 620..1396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:45 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13958796..13959414 1..619 99 -> Plus
3R 13959699..13960474 620..1396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:45 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13958796..13959414 1..619 99 -> Plus
3R 13959699..13960474 620..1396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:35 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9784518..9785136 1..619 99 -> Plus
arm_3R 9785421..9786196 620..1396 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:28 Download gff for RE60387.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13699627..13700245 1..619 99 -> Plus
3R 13700530..13701305 620..1396 99   Plus

RE60387.pep Sequence

Translation from 126 to 1253

> RE60387.pep
MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER
FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI
AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD
ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER
DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR
RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG
STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK
RNAGGIISVRNVDVVDELLAKLAEQ*

RE60387.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16228-PA 374 GF16228-PA 1..374 1..375 1692 84.5 Plus
Dana\GF18667-PA 304 GF18667-PA 111..258 159..323 163 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19895-PA 374 GG19895-PA 1..374 1..375 1881 94.9 Plus
Dere\GG11697-PA 306 GG11697-PA 113..256 159..319 160 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14420-PA 374 GH14420-PA 1..374 4..375 1322 65.9 Plus
Dgri\GH19967-PA 306 GH19967-PA 113..260 159..323 156 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ipp-PA 375 CG3028-PA 1..375 1..375 1907 100 Plus
CG7789-PA 306 CG7789-PA 113..256 159..319 157 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10045-PA 372 GI10045-PA 3..372 6..375 1439 71 Plus
Dmoj\GI22044-PA 308 GI22044-PA 113..260 159..323 152 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24229-PA 372 GL24229-PA 2..372 3..375 1661 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15747-PA 372 GA15747-PA 2..372 3..375 1656 82.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24144-PA 373 GM24144-PA 1..373 1..375 1922 97.6 Plus
Dsec\GM12826-PA 306 GM12826-PA 113..256 159..319 162 28.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18939-PA 362 GD18939-PA 1..362 1..375 1845 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22570-PA 376 GJ22570-PA 3..376 6..375 1452 70.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22680-PA 372 GK22680-PA 6..372 5..375 1528 79 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26306-PA 488 GE26306-PA 115..488 1..375 1886 94.9 Plus
Dyak\GE23887-PA 306 GE23887-PA 113..256 159..319 162 28.5 Plus

RE60387.hyp Sequence

Translation from 126 to 1253

> RE60387.hyp
MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER
FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI
AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD
ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER
DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR
RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG
STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK
RNAGGIISVRNVDVVDELLAKLAEQ*

RE60387.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ipp-PA 375 CG3028-PA 1..375 1..375 1907 100 Plus
CG7789-PA 306 CG7789-PA 113..256 159..319 157 27.4 Plus