BDGP Sequence Production Resources |
Search the DGRC for RE60404
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 604 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12721-RA |
Protein status: | RE60404.pep: gold |
Preliminary Size: | 519 |
Sequenced Size: | 825 |
Gene | Date | Evidence |
---|---|---|
CG12721 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12721 | 2002-05-14 | Blastp of sequenced clone |
CG12721 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12721 | 2008-04-29 | Release 5.5 accounting |
CG12721 | 2008-08-15 | Release 5.9 accounting |
CG12721 | 2008-12-18 | 5.12 accounting |
825 bp (825 high quality bases) assembled on 2002-05-14
GenBank Submission: AY119151
> RE60404.complete GTAATCTATCGGCGTAAGCAGCGTAGCTCTCATAAAACAATAACATTGAG AACCAGTCATTTCAACCACATTGCTTTGGCTTTGCCATGGCCAAGATATT GCCCACCGATGGCATCTGGATACCGGAGTCGTGCAGCTTTCCGGAGGATG TGATGATCGATATGATGGAGGGACTATTCCGCGATGTGCCAAACCTAACG CACAAGGAGTACCTGGCGCTGGCCGACCTGCAATCTAGATGGATGGCGAA GCTGGCCAACCGACAGCCGGAATCGAATCCCCTGCCGCCAAAGCCAAAGA AGCGTAAGAAAATCGCTCCAAAGAAGCAGGACCAGCCTGTCGAGGAGAAG GGCAGCGAAGTCGACATCTACGATGTGGACGACAACGAGATGGTCAACAA TCGCATCTACATTCCGCGACTGCGTTCCGCTTGGAGAGCTCGCTATTTCA ACATTATGATGCGCGCCTTTGTCATCAAACGGGGACTATTGAATAAGCAC ATTAACTGGCAGATTCTCGACAAGATCATGGCAGCCCCCGACGCAGAGGG ACAAGCCGAGCTTCAGGCGTTTGTTGACAAAGTGGTCGCAGGCCAGGAAA TGTAGTCCTTACAGCCTCCTAGGATAAGCACCCAAACACATAGATATGTA AATTCAAAATATCAATTGTTTACTCAAATTAAAAATAACAATTGTATAAT CAAATCAACCTTTGTAAAATCATACCAATTGAACATAAGCATAGGTGTGA AGCAAAACCAGAGCCAATAAACCATACGAATGCCATCGTCTTCTGTGGGC CAAATCAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12721-RA | 812 | CG12721-RA | 1..811 | 2..812 | 4040 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11963016..11963822 | 808..2 | 4035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 12072005..12072815 | 812..2 | 4040 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 12080103..12080913 | 812..2 | 4040 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3984..4148 | 635..795 | 203 | 60 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 893..996 | 640..743 | 115 | 63.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11963015..11963822 | 1..809 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..519 | 87..605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..519 | 87..605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..519 | 87..605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..519 | 87..605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..519 | 87..605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..807 | 2..809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 11..818 | 1..809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 3..810 | 1..809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 1..807 | 2..809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12721-RA | 3..810 | 1..809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12072008..12072815 | 1..809 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12072008..12072815 | 1..809 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12072008..12072815 | 1..809 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11966041..11966848 | 1..809 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12080106..12080913 | 1..809 | 99 | Minus |
Translation from 86 to 604
> RE60404.pep MAKILPTDGIWIPESCSFPEDVMIDMMEGLFRDVPNLTHKEYLALADLQS RWMAKLANRQPESNPLPPKPKKRKKIAPKKQDQPVEEKGSEVDIYDVDDN EMVNNRIYIPRLRSAWRARYFNIMMRAFVIKRGLLNKHINWQILDKIMAA PDAEGQAELQAFVDKVVAGQEM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19064-PA | 214 | GF19064-PA | 33..199 | 11..167 | 205 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19560-PA | 174 | GG19560-PA | 6..173 | 9..172 | 496 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17684-PA | 109 | GH17684-PA | 16..104 | 80..167 | 152 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
moon-PA | 172 | CG12721-PA | 1..172 | 1..172 | 904 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21506-PA | 131 | GI21506-PA | 48..126 | 89..167 | 143 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14842-PA | 323 | GL14842-PA | 132..312 | 8..167 | 209 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26328-PA | 287 | GA26328-PA | 107..276 | 8..167 | 215 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13218-PA | 169 | GM13218-PA | 1..166 | 1..166 | 646 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17518-PA | 157 | GK17518-PA | 2..137 | 37..165 | 210 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16721-PA | 182 | GE16721-PA | 5..172 | 1..168 | 544 | 64.9 | Plus |
Translation from 86 to 604
> RE60404.hyp MAKILPTDGIWIPESCSFPEDVMIDMMEGLFRDVPNLTHKEYLALADLQS RWMAKLANRQPESNPLPPKPKKRKKIAPKKQDQPVEEKGSEVDIYDVDDN EMVNNRIYIPRLRSAWRARYFNIMMRAFVIKRGLLNKHINWQILDKIMAA PDAEGQAELQAFVDKVVAGQEM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12721-PA | 172 | CG12721-PA | 1..172 | 1..172 | 904 | 100 | Plus |