BDGP Sequence Production Resources |
Search the DGRC for RE60471
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 604 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mdh2-RA |
Protein status: | RE60471.pep: gold |
Sequenced Size: | 1328 |
Gene | Date | Evidence |
---|---|---|
CG7998 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7998 | 2002-05-14 | Blastp of sequenced clone |
CG7998 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7998 | 2008-04-29 | Release 5.5 accounting |
CG7998 | 2008-08-15 | Release 5.9 accounting |
CG7998 | 2008-12-18 | 5.12 accounting |
1328 bp (1328 high quality bases) assembled on 2002-05-14
GenBank Submission: AY119152
> RE60471.complete GATTCGCAAATCTGTTTCATTGGCCCGTGGGATTTTGCTGGCAGAACTGC TCTCGTTTAATTGTTTTAACCAATACATTTTGTAACCAAAACCCGTGCAA ATATGCTGAAGCAAGTGACGAAGCAATTGGCCCTGCAGGGAGTGCGCACC TTCTCGGTTGGCCAGCAGAACAACTACAAGGTGACCGTTTGCGGTGCCGC TGGAGGAATCGGCCAGCCGCTGTCGCTGCTCCTCAAGCAGAATCCCCTGG TCACCGACTTGGCGCTCTACGATATCGTTCATACGCCCGGTGTGGCCGCC GATCTGTCGCATATCGACACCAAGAGCAAGACCGCCGGATTCATCGGAGC CGACCAGCTGGGTGACTCCCTGAAGGGATCCGATGTGGTGGTCATTCCCG CTGGTGTGCCCCGCAAGCCGGGCATGACCCGCGATGATCTGTTCAACGTG AACGCCGGCATCATCAAGGACATCTCCAACTCCATTGCCAAGAACTGCCC CAAGGCCCTGGTGGCCATCATCACCAACCCGGTGAACACCTGCGTGCCCA TCGCTGCCGAGATCCTCAAGAAGGCTGGTGTTTACGATCCCAAGCGTCTG TTCGGAGTCTCCACCTTGGATGTGGTGCGTGCCCGTGCCTTCATCGGCCA TGCCCTTGGTGTGGATCCCCAGACCGTGCAGATCCCCGTGATCGGCGGCC ACTCCGGCGTGACCATCCTGCCTGTGCTCTCCCAGAGCCAGCCCCTGTTC AAGGGCAACCAGGACACCATCGAGAAGCTTACCGTGCGCATCCAGGAGGC CGGTACTGAGGTCGTTAAGGCCAAGGCCGGAGCCGGTTCCGCCACTCTGT CGATGGCCTACGCTGGTGCCCGTTTCGCCGGCTCCCTGCTGAAGGGACTG AACGGCGAGAAGAACGTTATCGAGTGCTCCTACGTGCAGTCCACCGTCAC GGAGGCTACCTTCTTCTCCACACCCCTGGTGCTGGGCAAGAACGGCGTCC AGGAGAACCTCGGCCTGCCCAAGCTCAACGACTACGAGAAGAAGCTGCTG GAGGCCGCCATTCCCGAGCTGAAGAAGAACATCCAGAAGGGCATTGACTT TGCCAACGCCTAAGCGATCCAACAAATCCCATCCGCTACCAAAAAATCGT GTACTTCATTAGCGCCTATTGTGAATTGGCAAACTACCCATACTACCCCT AGCAAATCTTTCGTCTCAAGTCGGCGTGTCCCAAGATTATATAGATCTGC GCCTAGTGTGTGGTGTAAAATGAAACCAGTTGATATCTGAAATAAATAAA TTGTAAACTTGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14052252..14052992 | 572..1312 | 3705 | 100 | Plus |
chr3R | 27901430 | chr3R | 14051022..14051232 | 167..377 | 1055 | 100 | Plus |
chr3R | 27901430 | chr3R | 14051998..14052196 | 376..574 | 995 | 100 | Plus |
chr3R | 27901430 | chr3R | 14050693..14050860 | 1..168 | 840 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18227958..18228704 | 572..1318 | 3735 | 100 | Plus |
3R | 32079331 | 3R | 18226728..18226938 | 167..377 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 18227704..18227902 | 376..574 | 995 | 100 | Plus |
3R | 32079331 | 3R | 18226399..18226566 | 1..168 | 840 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17968789..17969535 | 572..1318 | 3735 | 100 | Plus |
3R | 31820162 | 3R | 17967559..17967769 | 167..377 | 1055 | 100 | Plus |
3R | 31820162 | 3R | 17968535..17968733 | 376..574 | 995 | 100 | Plus |
3R | 31820162 | 3R | 17967230..17967397 | 1..168 | 840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14050693..14050860 | 1..168 | 100 | -> | Plus |
chr3R | 14051024..14051231 | 169..376 | 100 | -> | Plus |
chr3R | 14051999..14052195 | 377..573 | 100 | -> | Plus |
chr3R | 14052254..14052992 | 574..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7998-RA | 1..1011 | 103..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 1..1011 | 103..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 1..1011 | 103..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7998-RA | 1..1011 | 103..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 1..1011 | 103..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7998-RA | 9..1320 | 1..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 9..1320 | 1..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 4..1315 | 1..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7998-RA | 9..1320 | 1..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mdh2-RA | 4..1315 | 1..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18226399..18226566 | 1..168 | 100 | -> | Plus |
3R | 18226730..18226937 | 169..376 | 100 | -> | Plus |
3R | 18227705..18227901 | 377..573 | 100 | -> | Plus |
3R | 18227960..18228698 | 574..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18226399..18226566 | 1..168 | 100 | -> | Plus |
3R | 18226730..18226937 | 169..376 | 100 | -> | Plus |
3R | 18227705..18227901 | 377..573 | 100 | -> | Plus |
3R | 18227960..18228698 | 574..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18226399..18226566 | 1..168 | 100 | -> | Plus |
3R | 18226730..18226937 | 169..376 | 100 | -> | Plus |
3R | 18227705..18227901 | 377..573 | 100 | -> | Plus |
3R | 18227960..18228698 | 574..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14052121..14052288 | 1..168 | 100 | -> | Plus |
arm_3R | 14052452..14052659 | 169..376 | 100 | -> | Plus |
arm_3R | 14053427..14053623 | 377..573 | 100 | -> | Plus |
arm_3R | 14053682..14054420 | 574..1312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17968791..17969529 | 574..1312 | 100 | Plus | |
3R | 17967230..17967397 | 1..168 | 100 | -> | Plus |
3R | 17967561..17967768 | 169..376 | 100 | -> | Plus |
3R | 17968536..17968732 | 377..573 | 100 | -> | Plus |
Translation from 102 to 1112
> RE60471.pep MLKQVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLV TDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPA GVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPI AAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGH SGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLS MAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQ ENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFANA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23071-PA | 336 | GF23071-PA | 1..336 | 1..336 | 1714 | 97.9 | Plus |
Dana\GF23749-PA | 356 | GF23749-PA | 33..352 | 22..335 | 909 | 55.6 | Plus |
Dana\GF10673-PA | 353 | GF10673-PA | 23..335 | 23..335 | 908 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22759-PA | 336 | GG22759-PA | 1..336 | 1..336 | 1738 | 99.7 | Plus |
Dere\GG15612-PA | 347 | GG15612-PA | 29..336 | 26..331 | 885 | 55.2 | Plus |
Dere\GG13791-PA | 353 | GG13791-PA | 36..333 | 38..335 | 845 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18558-PA | 336 | GH18558-PA | 1..336 | 1..336 | 1671 | 94.6 | Plus |
Dgri\GH21421-PA | 367 | GH21421-PA | 28..341 | 22..335 | 949 | 55.9 | Plus |
Dgri\GH21422-PA | 331 | GH21422-PA | 31..328 | 36..333 | 916 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mdh2-PA | 336 | CG7998-PA | 1..336 | 1..336 | 1688 | 100 | Plus |
CG10749-PA | 347 | CG10749-PA | 29..336 | 26..331 | 898 | 57.5 | Plus |
CG10748-PA | 349 | CG10748-PA | 24..332 | 26..334 | 856 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24757-PA | 336 | GI24757-PA | 1..336 | 1..336 | 1690 | 96.1 | Plus |
Dmoj\GI18597-PA | 382 | GI18597-PA | 34..348 | 22..334 | 970 | 59.4 | Plus |
Dmoj\GI18598-PA | 338 | GI18598-PA | 28..333 | 26..331 | 929 | 56.5 | Plus |
Dmoj\GI14636-PA | 322 | GI14636-PA | 6..316 | 22..332 | 885 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12005-PA | 336 | GL12005-PA | 1..336 | 1..336 | 1660 | 93.8 | Plus |
Dper\GL25264-PA | 354 | GL25264-PA | 27..348 | 18..336 | 957 | 57.1 | Plus |
Dper\GL10476-PA | 383 | GL10476-PA | 1..302 | 1..305 | 877 | 56.9 | Plus |
Dper\GL24873-PA | 344 | GL24873-PA | 19..282 | 38..301 | 726 | 52.3 | Plus |
Dper\GL16414-PA | 240 | GL16414-PA | 1..237 | 97..333 | 697 | 57.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20754-PA | 336 | GA20754-PA | 1..336 | 1..336 | 1660 | 93.8 | Plus |
Dpse\GA24380-PA | 350 | GA24380-PA | 1..331 | 1..334 | 972 | 56.7 | Plus |
Dpse\GA10541-PA | 354 | GA10541-PA | 27..348 | 18..336 | 950 | 56.8 | Plus |
Dpse\GA22565-PA | 346 | GA22565-PA | 28..343 | 18..333 | 882 | 55.4 | Plus |
Dpse\GA10540-PA | 340 | GA10540-PA | 38..334 | 38..334 | 881 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15290-PA | 336 | GM15290-PA | 1..336 | 1..336 | 1742 | 100 | Plus |
Dsec\GM25384-PA | 347 | GM25384-PA | 29..338 | 26..333 | 926 | 57.4 | Plus |
Dsec\GM24618-PA | 349 | GM24618-PA | 36..332 | 38..334 | 860 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19217-PA | 329 | GD19217-PA | 1..329 | 1..336 | 1690 | 97.9 | Plus |
Dsim\GD12684-PA | 349 | GD12684-PA | 36..332 | 38..334 | 859 | 52.9 | Plus |
Dsim\GD14416-PA | 255 | GD14416-PA | 1..244 | 90..331 | 736 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22544-PA | 336 | GJ22544-PA | 1..336 | 1..336 | 1671 | 95.2 | Plus |
Dvir\GJ20394-PA | 341 | GJ20394-PA | 1..341 | 1..336 | 983 | 53.5 | Plus |
Dvir\GJ20393-PA | 380 | GJ20393-PA | 37..349 | 24..334 | 973 | 59.4 | Plus |
Dvir\GJ19287-PA | 317 | GJ19287-PA | 4..316 | 21..333 | 952 | 56.5 | Plus |
Dvir\GJ21641-PA | 343 | GJ21641-PA | 33..334 | 26..323 | 163 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22386-PA | 336 | GK22386-PA | 1..336 | 1..336 | 1707 | 97.6 | Plus |
Dwil\GK19917-PA | 340 | GK19917-PA | 13..337 | 12..333 | 927 | 54.8 | Plus |
Dwil\GK22135-PA | 343 | GK22135-PA | 5..336 | 8..335 | 925 | 52.4 | Plus |
Dwil\GK22161-PA | 346 | GK22161-PA | 37..334 | 38..335 | 883 | 55.4 | Plus |
Dwil\GK22134-PA | 123 | GK22134-PA | 16..102 | 248..334 | 193 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25523-PA | 336 | GE25523-PA | 1..336 | 1..336 | 1737 | 99.7 | Plus |
Dyak\GE21938-PA | 347 | GE21938-PA | 29..336 | 26..331 | 904 | 57.1 | Plus |
Dyak\GE20084-PA | 349 | GE20084-PA | 36..333 | 38..335 | 850 | 52 | Plus |
Translation from 102 to 1112
> RE60471.hyp MLKQVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLV TDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPA GVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPI AAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGH SGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLS MAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQ ENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFANA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mdh2-PA | 336 | CG7998-PA | 1..336 | 1..336 | 1688 | 100 | Plus |
CG10749-PA | 347 | CG10749-PA | 29..336 | 26..331 | 898 | 57.5 | Plus |
CG10748-PA | 349 | CG10748-PA | 24..332 | 26..334 | 856 | 52.4 | Plus |