Clone RE60735 Report

Search the DGRC for RE60735

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:607
Well:35
Vector:pFlc-1
Associated Gene/TranscriptCG12991-RA
Protein status:RE60735.pep: gold
Sequenced Size:2374

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12992 2002-01-01 Sim4 clustering to Release 2
CG12991 2002-04-26 Blastp of sequenced clone
CG12991 2003-01-01 Sim4 clustering to Release 3
CG12991 2008-04-29 Release 5.5 accounting
CG12991 2008-08-15 Release 5.9 accounting
CG12991 2008-12-18 5.12 accounting

Clone Sequence Records

RE60735.complete Sequence

2374 bp (2374 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113530

> RE60735.complete
ATAACGTTCGTGGATTTCGTGGGGAATAGCGGTCGACTCGCGCGGTCTCA
TTTTTTTAACGTGCTTGTGTTGTGTGTGTGAATGTGTTTGGCGTGCGGCT
AACACTGTTGTTGTCGAATTGTTGTTGTTGTTGGTAAAAACTTGCGCGCC
ATTACTAACAGTAAATTAAAGGAGTATCACTGCAAAAAAAAAAAAAATTG
AATACACGCAAATTTGAAAGCTGCGACCCAAAAAGTTGCATCTGAAGTGC
AAGAAGGAAACAAATTAAATATTCACTAGGGCGGAATACTAAGGAAAACT
CAAGCCACACACTGAGGAAATCAAAGTAGGAACAACTAAAACTCGTTTGG
GAGCAGTCGTCGCAAAATCACAGAACGGGACGCATCATGACTTTCTACTG
GTGGTCACACTGGTTCTGGATAACCCTGATCCTGAGTGTTAACTTGCTGT
CCAGCCATGTCCACACATATCCCAGCCAGGAGGCGGAGTCACTGACCTCC
AGCCCGCATACCCAATCCCAAACGCAGCCCGTGCGCACCACCAAGCTCTA
CCAAACGACGGTCACCCAGATGTGGGGCCCAGCCACCCAGAGCAACATCA
TGGACCTGACCCACCGACCCACCACCACACGGCCGGTGGTAACCCCCAGT
TATGGTGGTGGCCCCCAATTGGCCCAGGTCCATGATGTTGAACAGGCAGT
GGAGCTGCAGGAGGAGGATGAGGTGGTGGAGGAGGAGGAGCTGCCGCTCA
ACGATCGTGACCAGCAGGAGCAGGATGAGATTCCCGATCAAGAGCGCCGG
CAGGATGAGGCAGATGCAGATCCAGATGCGGATGCGGATATCGAGGACGC
TGTAGCAAACGAGGAGCTGGCTCAATTCGAGTTCAAGCGATCGGCGGACT
TCACCTCCGACCAGCTGAATAACTTTACGAATTTTAGCAGTAGCACTAGT
ACAAATGGCAGCAGCAGCAGTAGCACCACCACAAAACCAGTTGCAATCAG
CAGCAGTAGTCCGGCCAGCACAACAACCACCACCGCGAAAGTGTTGGCAA
CATCGCCGGCAGCTGCAATAACACCACGGGCCGGAGGCAGTGCATCCACT
TCCACGCCGGCTGGTTCCGCGGCTACGCCGTCCACGCCAAAGATCCACAC
GGAATGGCTATCCGATGAGCTGCTGGCGGGTGCGACTGGTGGCCTGGGGT
CAGCGGTCACGGTCGAGGGCGAAAAGGCGCCGTTCACCCTGGAAAATGCC
AACAAGGAGGATGAACTTAGGCGTGCCGAAAGCGAGCATAGATCGCGAAA
ATCGAAGGTTCTATCCGCGGAGTATAAGCACATCAATCGCTACATCAACT
TCTCCGGCGACACCAAGAGTCTTCTGACCAGATCCGCCTCCGCGGCGCCC
AGCGTGGCGGGGGGCGTGGCCGGATCCGGGTTCTACGACGGAGGCGTCGG
CGACGAGGGCAATATCTCATCCGAGGCACTGGCCATTCAGCGAACGTACT
TCCTGGATGCGGGTGCCATTTCGGCGATTTGCTTCACTGTCTTCGGCGTC
TGCTGCACAGTGGGCACCATTGGGATCGTACTGTACCGTCGTCGGTATCT
GAACAAACCGCAAGCGCTCAGCGAACCAGACTCGAGTGTCTATATCGATG
ATAGCACGATGCGGGTGAGTGACAATTCGGATGAGATGTACAGCCTGGAC
AACGACTCGTTTCTCAATTCGCTGGAGGCGATGACAATACAGAACTACTG
GACGGATACGGTCAAACATACAAAGCTTTAATCTCCGGCCTTCCCCGTTG
GAAGTCCAATCCCCTCTATCATTTATTGTACGTCTTTGGTTCGATTTCGA
TTACGATTCTGTTTCGTTTCGCTGTTAAAATTCCATTCCTGATTTGACAA
CCAGACATCATAATCATTAAGTAGCGTAGTTTTTAAGCGCGTGTATGTAT
TTACTAATGTTAGGCAACCAAACGAGCAACTAGTTTAAGCCCAAAACTAC
CAAAATTATGTTTAGTGTACGTGTAGATCCTAAGTGCGCAATGTTTTTGT
TGGCCTTGACTGTTAGTTAAAGCCTTTCCCTAACAACTTCCCCACTAACC
CGATTTTTGTAAACCAACCCATTGTACTCGTATCTGTTAGTTAATTATTA
AACCTTATTTATATTGTTGACTATTTTATCGCCCTTCCCAACCCAAGTCT
AATTTTAGAAAACACTATTTATTAAGTTTCCAACTTTGTGTCCAACAATT
AAATGCAATCATTCCTTCCAGTTTAGCCTATAGAGCAACTTTACACTGTA
ATTAATGTATTAAAAGCGAAGCAAGCAAACAACAATTAAAAGAAAACATC
ACACAACCAAAAAAAAAAAAAAAA

RE60735.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RA 2470 CG12991-RA 22..2380 1..2359 11765 99.9 Plus
CG12991.a 2754 CG12991.a 22..2380 1..2359 11765 99.9 Plus
CG12991-RB 2262 CG12991-RB 132..2256 235..2359 10610 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17487612..17488299 1671..2358 3440 100 Plus
chrX 22417052 chrX 17486728..17487270 948..1490 2715 100 Plus
chrX 22417052 chrX 17486153..17486664 438..949 2545 99.8 Plus
chrX 22417052 chrX 17469207..17469441 1..235 1160 99.6 Plus
chrX 22417052 chrX 17487352..17487535 1488..1671 905 99.5 Plus
chrX 22417052 chrX 17478325..17478434 234..343 550 100 Plus
chrX 22417052 chrX 17486001..17486099 344..442 480 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17598268..17598956 1671..2359 3445 100 Plus
X 23542271 X 17597384..17597926 948..1490 2715 100 Plus
X 23542271 X 17596809..17597320 438..949 2560 100 Plus
X 23542271 X 17579863..17580097 1..235 1160 99.6 Plus
X 23542271 X 17598008..17598191 1488..1671 905 99.5 Plus
X 23542271 X 17588986..17589095 234..343 550 100 Plus
X 23542271 X 17596657..17596755 344..442 480 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17606366..17607054 1671..2359 3445 100 Plus
X 23527363 X 17605482..17606024 948..1490 2715 100 Plus
X 23527363 X 17604907..17605418 438..949 2560 100 Plus
X 23527363 X 17587961..17588195 1..235 1160 99.5 Plus
X 23527363 X 17606106..17606289 1488..1671 905 99.4 Plus
X 23527363 X 17597084..17597193 234..343 550 100 Plus
X 23527363 X 17604755..17604853 344..442 480 98.9 Plus
Blast to na_te.dros performed 2019-03-16 23:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2483 936..1083 191 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2465 936..1086 178 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6896 936..1099 175 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6928 936..1080 169 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6897 936..1076 166 63 Plus
roo 9092 roo DM_ROO 9092bp 1056..1166 933..1039 166 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1074..1146 936..1008 157 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6927 936..1038 126 60.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 978..1063 959..1036 122 67.4 Plus

RE60735.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:26:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17478327..17478434 236..343 100 -> Plus
chrX 17486001..17486095 344..438 100 -> Plus
chrX 17469207..17469441 1..235 99 -> Plus
chrX 17486154..17486664 439..949 99 -> Plus
chrX 17486730..17487270 950..1490 100 -> Plus
chrX 17487355..17487534 1491..1670 99 -> Plus
chrX 17487612..17488299 1671..2358 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:41 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 1..1395 387..1781 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:13 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 1..1395 387..1781 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:37 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 1..1395 387..1781 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 1..1395 387..1781 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:45 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 1..1395 387..1781 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:41 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 6..2363 1..2358 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:13 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 6..2363 1..2358 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:37 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 3..2360 1..2358 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 6..2363 1..2358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:45 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 3..2360 1..2358 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
X 17579863..17580097 1..235 99 -> Plus
X 17588988..17589095 236..343 100 -> Plus
X 17596657..17596751 344..438 100 -> Plus
X 17596810..17597320 439..949 100 -> Plus
X 17597386..17597926 950..1490 100 -> Plus
X 17598011..17598190 1491..1670 99 -> Plus
X 17598268..17598955 1671..2358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
X 17579863..17580097 1..235 99 -> Plus
X 17588988..17589095 236..343 100 -> Plus
X 17596657..17596751 344..438 100 -> Plus
X 17596810..17597320 439..949 100 -> Plus
X 17597386..17597926 950..1490 100 -> Plus
X 17598011..17598190 1491..1670 99 -> Plus
X 17598268..17598955 1671..2358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:54 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
X 17579863..17580097 1..235 99 -> Plus
X 17588988..17589095 236..343 100 -> Plus
X 17596657..17596751 344..438 100 -> Plus
X 17596810..17597320 439..949 100 -> Plus
X 17597386..17597926 950..1490 100 -> Plus
X 17598011..17598190 1491..1670 99 -> Plus
X 17598268..17598955 1671..2358 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:37 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17473896..17474130 1..235 99 -> Plus
arm_X 17483021..17483128 236..343 100 -> Plus
arm_X 17490690..17490784 344..438 100 -> Plus
arm_X 17490843..17491353 439..949 100 -> Plus
arm_X 17491419..17491959 950..1490 100 -> Plus
arm_X 17492044..17492223 1491..1670 99 -> Plus
arm_X 17492301..17492988 1671..2358 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:21 Download gff for RE60735.complete
Subject Subject Range Query Range Percent Splice Strand
X 17587961..17588195 1..235 99 -> Plus
X 17597086..17597193 236..343 100 -> Plus
X 17604755..17604849 344..438 100 -> Plus
X 17604908..17605418 439..949 100 -> Plus
X 17605484..17606024 950..1490 100 -> Plus
X 17606109..17606288 1491..1670 99 -> Plus
X 17606366..17607053 1671..2358 100   Plus

RE60735.hyp Sequence

Translation from 386 to 1780

> RE60735.hyp
MTFYWWSHWFWITLILSVNLLSSHVHTYPSQEAESLTSSPHTQSQTQPVR
TTKLYQTTVTQMWGPATQSNIMDLTHRPTTTRPVVTPSYGGGPQLAQVHD
VEQAVELQEEDEVVEEEELPLNDRDQQEQDEIPDQERRQDEADADPDADA
DIEDAVANEELAQFEFKRSADFTSDQLNNFTNFSSSTSTNGSSSSSTTTK
PVAISSSSPASTTTTTAKVLATSPAAAITPRAGGSASTSTPAGSAATPST
PKIHTEWLSDELLAGATGGLGSAVTVEGEKAPFTLENANKEDELRRAESE
HRSRKSKVLSAEYKHINRYINFSGDTKSLLTRSASAAPSVAGGVAGSGFY
DGGVGDEGNISSEALAIQRTYFLDAGAISAICFTVFGVCCTVGTIGIVLY
RRRYLNKPQALSEPDSSVYIDDSTMRVSDNSDEMYSLDNDSFLNSLEAMT
IQNYWTDTVKHTKL*

RE60735.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-PF 464 CG12991-PF 1..464 1..464 2385 100 Plus
CG12991-PB 464 CG12991-PB 1..464 1..464 2385 100 Plus
CG12991-PA 464 CG12991-PA 1..464 1..464 2385 100 Plus
CG12991-PE 469 CG12991-PE 1..469 1..464 2364 98.7 Plus
CG12991-PD 462 CG12991-PD 1..462 1..464 2364 99.6 Plus

RE60735.pep Sequence

Translation from 386 to 1780

> RE60735.pep
MTFYWWSHWFWITLILSVNLLSSHVHTYPSQEAESLTSSPHTQSQTQPVR
TTKLYQTTVTQMWGPATQSNIMDLTHRPTTTRPVVTPSYGGGPQLAQVHD
VEQAVELQEEDEVVEEEELPLNDRDQQEQDEIPDQERRQDEADADPDADA
DIEDAVANEELAQFEFKRSADFTSDQLNNFTNFSSSTSTNGSSSSSTTTK
PVAISSSSPASTTTTTAKVLATSPAAAITPRAGGSASTSTPAGSAATPST
PKIHTEWLSDELLAGATGGLGSAVTVEGEKAPFTLENANKEDELRRAESE
HRSRKSKVLSAEYKHINRYINFSGDTKSLLTRSASAAPSVAGGVAGSGFY
DGGVGDEGNISSEALAIQRTYFLDAGAISAICFTVFGVCCTVGTIGIVLY
RRRYLNKPQALSEPDSSVYIDDSTMRVSDNSDEMYSLDNDSFLNSLEAMT
IQNYWTDTVKHTKL*

RE60735.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22342-PA 380 GF22342-PA 1..380 1..464 1202 61.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19120-PA 463 GG19120-PA 1..463 1..464 2073 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12004-PA 497 GH12004-PA 1..219 1..199 280 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-PF 464 CG12991-PF 1..464 1..464 2385 100 Plus
CG12991-PB 464 CG12991-PB 1..464 1..464 2385 100 Plus
CG12991-PA 464 CG12991-PA 1..464 1..464 2385 100 Plus
CG12991-PE 469 CG12991-PE 1..469 1..464 2364 98.7 Plus
CG12991-PD 462 CG12991-PD 1..462 1..464 2364 99.6 Plus
CG12991-PC 460 CG12991-PC 1..460 1..464 2349 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14634-PA 468 GI14634-PA 1..468 1..464 1127 55.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13052-PA 379 GL13052-PA 168..379 233..464 989 83.6 Plus
Dper\GL13052-PA 379 GL13052-PA 1..74 1..79 252 67.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11960-PA 446 GA11960-PA 1..446 1..464 1265 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13515-PA 464 GM13515-PA 1..464 1..464 2410 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15673-PA 464 GD15673-PA 1..464 1..464 2408 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19285-PA 562 GJ19285-PA 112..562 1..464 1136 54.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19714-PA 412 GK19714-PA 1..412 1..464 1179 59.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17672-PA 473 GE17672-PA 1..473 1..464 1844 90.7 Plus