Clone RE60807 Report

Search the DGRC for RE60807

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:608
Well:7
Vector:pFlc-1
Associated Gene/TranscripteIF2B-beta-RA
Protein status:RE60807.pep: gold
Preliminary Size:1059
Sequenced Size:1281

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2677 2002-01-01 Sim4 clustering to Release 2
CG2677 2003-01-01 Sim4 clustering to Release 3
eIF2B-beta 2008-04-29 Release 5.5 accounting
eIF2B-beta 2008-08-15 Release 5.9 accounting
eIF2B-beta 2008-12-18 5.12 accounting

Clone Sequence Records

RE60807.complete Sequence

1281 bp (1281 high quality bases) assembled on 2005-10-12

GenBank Submission: BT023929

> RE60807.complete
AGAATTCGCTTTCGCCTGCCGCCTATCGATAACATTGCTCGGTGTGGCGA
TTTCGTAAATAGTTTTCTAACTGAATAATGGTAACAGTTGGCCACTTTAG
TTGATAATTCATAATTGCAAAGACCAGAGACGCCAGGACACGATGAAGGA
ACAGCCGCTAAAGGAGATCACACAGCTCATCCACGCCATCAAAGTGGGGC
TGGTGGAGGGATCCTACAACATAACCAACAAGACGCTGGACATCTTCAAG
TACATCATCATGAGCAAGAGCTGGCAGAACGCCGATGCTCTCATGCAGAT
TGTGCGCGACCAGTGTAAGATCCTGCAGGCAGCTCTGCCCCAGGAGACGG
TTACCTCGAACATTGCCAGGCGGATCCTCAAGCTGACTCGCGAGGAGTTC
GATCTGTTGCACGCCAAGGTGCAACACTTCGCGGACGACTCACAGGCCTC
GCTGTCGCTTCACAAGCTAGTCACGCAGACCAGCGAGAGCAACGTCAGCG
TAGATTACTCGGTGCCCCAGCATGGATTGCGGGAAGCGCTGCTCGACCAC
CTGCAGGAGGTGGAAACGGAGCTGGAGACCAGTTCGGAGAACATCTGCGT
CCAGGCCGAGGAGCACATCCATTCGTCGGAGATCATCTTGACACTGGGAC
ACTCGCGCAGCGTCGAGAATTTCCTCAAAAGGGCGATCAAAAAGCGTCAG
TTTCTCACCATCATCGTAGCCGAATGTGCGCCAGCCTGCCGGGGTCACAA
TTTGGCCGCCAGCTTGGCCAACGAGAAGAATGTGGAGATTGTTGTGATCC
CAGATGCGGCCATCTTCGCTATGATGTCGCGCGTCAACAAGGTAATAATC
GGTACGCACAGCGTGCTGGCTAATGGAGGACTCAGAGCGGCGTGTGGAGC
GTATACAGTGGCCCTGGCCGCCAAGCATTACTCCGTGCCGGTCATTGTAC
TGGCGCCCATGTACAAACTCTCACCATTGCATCTGTGCGAGCAGGACGCC
TTCAATATGGTCGGCTGTGCGGAGGATGTGATACCCTACGATTCGATTCC
AGCGCGCGAAGCCAAGGTATACAGTCCCATGTTCGACTACGTGCCTCCGG
AACTGGTCACCCTTTTCATATCCAACACCGGTGGCCATGCCCCCTCGTAT
GTGTACCGCCTCCTTACGGAACTGTATCATCCCGAAGATTTGGAGATTTG
AAATCGTGTTTGTCTCGTTGTTTTAGCAATTCTACCAATAAAGTCTACAG
TAAAGTAGCAAGCCCAAAAAAAAAAAAAAAA

RE60807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1285 eIF2B-beta-RA 1..1266 1..1266 6330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2598809..2599266 286..743 2290 100 Plus
chrX 22417052 chrX 2599355..2599741 742..1128 1935 100 Plus
chrX 22417052 chrX 2598392..2598590 1..199 995 100 Plus
chrX 22417052 chrX 2599810..2599946 1129..1265 685 100 Plus
chrX 22417052 chrX 2598652..2598739 198..285 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2704993..2705450 286..743 2290 100 Plus
X 23542271 X 2705539..2705925 742..1128 1935 100 Plus
X 23542271 X 2704576..2704774 1..199 995 100 Plus
X 23542271 X 2705994..2706131 1129..1266 690 100 Plus
X 23542271 X 2704836..2704923 198..285 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2713091..2713548 286..743 2290 100 Plus
X 23527363 X 2713637..2714023 742..1128 1935 100 Plus
X 23527363 X 2712674..2712872 1..199 995 100 Plus
X 23527363 X 2714092..2714229 1129..1266 690 100 Plus
X 23527363 X 2712934..2713021 198..285 440 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:04:52 has no hits.

RE60807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:38 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2598653..2598739 199..285 100 -> Plus
chrX 2598809..2599265 286..742 100 -> Plus
chrX 2598392..2598589 1..198 100 -> Plus
chrX 2599356..2599741 743..1128 100 -> Plus
chrX 2599810..2599946 1129..1265 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:11 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 143..1201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:09 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 143..1201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:27 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 143..1201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:04 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 143..1201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:06 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 143..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:22:21 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1201 1..1201 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:08 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1265 1..1265 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:27 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 6..1270 1..1265 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:07 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1201 1..1201 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:06 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 6..1270 1..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:38 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
X 2704576..2704773 1..198 100 -> Plus
X 2704837..2704923 199..285 100 -> Plus
X 2704993..2705449 286..742 100 -> Plus
X 2705540..2705925 743..1128 100 -> Plus
X 2705994..2706130 1129..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:38 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
X 2704576..2704773 1..198 100 -> Plus
X 2704837..2704923 199..285 100 -> Plus
X 2704993..2705449 286..742 100 -> Plus
X 2705540..2705925 743..1128 100 -> Plus
X 2705994..2706130 1129..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:38 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
X 2704576..2704773 1..198 100 -> Plus
X 2704837..2704923 199..285 100 -> Plus
X 2704993..2705449 286..742 100 -> Plus
X 2705540..2705925 743..1128 100 -> Plus
X 2705994..2706130 1129..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:27 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2598609..2598806 1..198 100 -> Plus
arm_X 2598870..2598956 199..285 100 -> Plus
arm_X 2599026..2599482 286..742 100 -> Plus
arm_X 2599573..2599958 743..1128 100 -> Plus
arm_X 2600027..2600163 1129..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:29 Download gff for RE60807.complete
Subject Subject Range Query Range Percent Splice Strand
X 2713091..2713547 286..742 100 -> Plus
X 2713638..2714023 743..1128 100 -> Plus
X 2714092..2714228 1129..1265 100   Plus
X 2712674..2712871 1..198 100 -> Plus
X 2712935..2713021 199..285 100 -> Plus

RE60807.pep Sequence

Translation from 142 to 1200

> RE60807.pep
MKEQPLKEITQLIHAIKVGLVEGSYNITNKTLDIFKYIIMSKSWQNADAL
MQIVRDQCKILQAALPQETVTSNIARRILKLTREEFDLLHAKVQHFADDS
QASLSLHKLVTQTSESNVSVDYSVPQHGLREALLDHLQEVETELETSSEN
ICVQAEEHIHSSEIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACR
GHNLAASLANEKNVEIVVIPDAAIFAMMSRVNKVIIGTHSVLANGGLRAA
CGAYTVALAAKHYSVPVIVLAPMYKLSPLHLCEQDAFNMVGCAEDVIPYD
SIPAREAKVYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDL
EI*

RE60807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22448-PA 352 GF22448-PA 1..352 1..352 1830 97.4 Plus
Dana\GF16217-PA 306 GF16217-PA 97..305 130..345 183 27.2 Plus
Dana\GF13053-PA 655 GF13053-PA 424..633 124..327 154 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18621-PA 352 GG18621-PA 1..352 1..352 1853 98.6 Plus
Dere\GG11983-PA 306 GG11983-PA 97..305 130..345 184 27.6 Plus
Dere\GG22851-PA 630 GG22851-PA 399..608 124..327 167 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12777-PA 352 GH12777-PA 1..352 1..352 1744 91.8 Plus
Dgri\GH22202-PA 306 GH22202-PA 97..305 130..345 182 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2Bbeta-PA 352 CG2677-PA 1..352 1..352 1787 100 Plus
eIF2Bdelta-PD 576 CG10315-PD 306..554 89..327 183 23.2 Plus
eIF2Bdelta-PB 576 CG10315-PB 306..554 89..327 183 23.2 Plus
eIF2Bdelta-PC 576 CG10315-PC 306..554 89..327 183 23.2 Plus
eIF2Bdelta-PA 626 CG10315-PA 356..604 89..327 183 23.2 Plus
eIF2Balpha-PA 306 CG7883-PA 97..305 130..345 180 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15870-PA 352 GI15870-PA 1..352 1..352 1739 92 Plus
Dmoj\GI21971-PA 306 GI21971-PA 97..305 130..345 185 27 Plus
Dmoj\GI20509-PA 643 GI20509-PA 412..621 124..327 163 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19913-PA 352 GL19913-PA 1..352 1..352 1814 96 Plus
Dper\GL13494-PA 306 GL13494-PA 110..305 143..345 179 27.6 Plus
Dper\GL16909-PA 632 GL16909-PA 401..610 124..327 178 25.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15423-PA 352 GA15423-PA 1..352 1..352 1814 96 Plus
Dpse\GA20657-PA 306 GA20657-PA 110..305 143..345 179 27.6 Plus
Dpse\GA10239-PA 572 GA10239-PA 341..550 124..327 177 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19241-PA 352 GM19241-PA 1..352 1..352 1870 99.7 Plus
Dsec\GM12201-PA 306 GM12201-PA 97..305 130..345 184 27.6 Plus
Dsec\GM16009-PA 630 GM16009-PA 399..608 124..327 161 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16616-PA 352 GD16616-PA 1..352 1..352 1870 99.7 Plus
Dsim\GD17524-PA 306 GD17524-PA 97..305 130..345 184 27.6 Plus
Dsim\GD11760-PA 630 GD11760-PA 399..608 124..327 164 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18516-PA 352 GJ18516-PA 1..352 1..352 1740 91.8 Plus
Dvir\GJ14332-PA 306 GJ14332-PA 97..305 130..345 188 27.6 Plus
Dvir\GJ22361-PA 593 GJ22361-PA 363..571 125..327 152 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19802-PA 352 GK19802-PA 1..352 1..352 1782 93.8 Plus
Dwil\GK14086-PA 306 GK14086-PA 97..305 130..345 192 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16274-PA 352 GE16274-PA 1..352 1..352 1861 98.9 Plus
Dyak\GE10409-PA 306 GE10409-PA 97..305 130..345 183 27.6 Plus
Dyak\GE14287-PA 636 GE14287-PA 405..614 124..327 167 27.2 Plus

RE60807.hyp Sequence

Translation from 142 to 1200

> RE60807.hyp
MKEQPLKEITQLIHAIKVGLVEGSYNITNKTLDIFKYIIMSKSWQNADAL
MQIVRDQCKILQAALPQETVTSNIARRILKLTREEFDLLHAKVQHFADDS
QASLSLHKLVTQTSESNVSVDYSVPQHGLREALLDHLQEVETELETSSEN
ICVQAEEHIHSSEIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACR
GHNLAASLANEKNVEIVVIPDAAIFAMMSRVNKVIIGTHSVLANGGLRAA
CGAYTVALAAKHYSVPVIVLAPMYKLSPLHLCEQDAFNMVGCAEDVIPYD
SIPAREAKVYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDL
EI*

RE60807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-PA 352 CG2677-PA 1..352 1..352 1787 100 Plus
eIF2B-delta-PD 576 CG10315-PD 306..554 89..327 183 23.2 Plus
eIF2B-delta-PB 576 CG10315-PB 306..554 89..327 183 23.2 Plus
eIF2B-delta-PC 576 CG10315-PC 306..554 89..327 183 23.2 Plus
eIF2B-alpha-PA 306 CG7883-PA 97..305 130..345 180 27.6 Plus