BDGP Sequence Production Resources |
Search the DGRC for RE60835
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 608 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG16865-RA |
Protein status: | RE60835.pep: gold |
Preliminary Size: | 744 |
Sequenced Size: | 925 |
Gene | Date | Evidence |
---|---|---|
CG16865 | 2002-01-01 | Sim4 clustering to Release 2 |
CG16865 | 2002-04-26 | Blastp of sequenced clone |
CG16865 | 2008-04-29 | Release 5.5 accounting |
CG16865 | 2008-08-15 | Release 5.9 accounting |
CG16865 | 2008-12-18 | 5.12 accounting |
925 bp (925 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113531
> RE60835.complete GTTTACCTTTTGCTTGCACACTCTGGTCTCACTGTTTATTTATTTACTTG CGGTGTTTAATGAAATAGGAAATTACTTTAATTTTATAAGTTTCATAAGT CCGAAACCCACAAATAACCATGCCCAAAGTAGTGTCGCGCAGTATCGTCT GCTCCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAAC ATTTACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCT CGAACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCA ACGACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTAC ATCAAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAA GTGCCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCC ACGTAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGT CCTCTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACC GGCTGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGG ATGCCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGC AAGTTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAAT CGAGGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCG AGAAGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAA ACCAAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCT ACTGGAAAGATAGTCACACTCTGCCTCCTTATTACCCACAACTAAATATA TTTGACGACGCAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16865-RA | 931 | CG16865-RA | 1..914 | 1..914 | 4555 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 13810761..13811068 | 400..707 | 1540 | 100 | Plus |
chr2L | 23010047 | chr2L | 13810237..13810476 | 1..240 | 1200 | 100 | Plus |
chr2L | 23010047 | chr2L | 13811189..13811391 | 707..909 | 1000 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 13810536..13810697 | 240..401 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13812050..13812357 | 400..707 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811526..13811765 | 1..240 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812685 | 707..914 | 1025 | 99.5 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 240..401 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13812050..13812357 | 400..707 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811526..13811765 | 1..240 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812685 | 707..914 | 1025 | 99.5 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 240..401 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 195..254 | 780..718 | 109 | 68.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 13810537..13810697 | 241..401 | 100 | -> | Plus |
chr2L | 13810763..13811068 | 402..707 | 100 | -> | Plus |
chr2L | 13811190..13811393 | 708..911 | 99 | Plus | |
chr2L | 13810237..13810476 | 1..240 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..744 | 120..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..744 | 120..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..744 | 120..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..744 | 120..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..744 | 120..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..911 | 1..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..911 | 1..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 5..915 | 1..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 1..911 | 1..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG16865-RA | 5..915 | 1..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13811526..13811765 | 1..240 | 100 | -> | Plus |
2L | 13811826..13811986 | 241..401 | 100 | -> | Plus |
2L | 13812052..13812357 | 402..707 | 100 | -> | Plus |
2L | 13812479..13812682 | 708..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13811526..13811765 | 1..240 | 100 | -> | Plus |
2L | 13811826..13811986 | 241..401 | 100 | -> | Plus |
2L | 13812052..13812357 | 402..707 | 100 | -> | Plus |
2L | 13812479..13812682 | 708..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13811526..13811765 | 1..240 | 100 | -> | Plus |
2L | 13811826..13811986 | 241..401 | 100 | -> | Plus |
2L | 13812052..13812357 | 402..707 | 100 | -> | Plus |
2L | 13812479..13812682 | 708..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13811526..13811765 | 1..240 | 100 | -> | Plus |
arm_2L | 13811826..13811986 | 241..401 | 100 | -> | Plus |
arm_2L | 13812052..13812357 | 402..707 | 100 | -> | Plus |
arm_2L | 13812479..13812682 | 708..911 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13811526..13811765 | 1..240 | 100 | -> | Plus |
2L | 13811826..13811986 | 241..401 | 100 | -> | Plus |
2L | 13812052..13812357 | 402..707 | 100 | -> | Plus |
2L | 13812479..13812682 | 708..911 | 99 | Plus |
Translation from 119 to 862
> RE60835.pep MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLER*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14258-PA | 247 | GF14258-PA | 1..247 | 1..247 | 1064 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23882-PA | 247 | GG23882-PA | 1..247 | 1..247 | 1193 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11115-PA | 247 | GH11115-PA | 1..247 | 1..247 | 990 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG16865-PB | 247 | CG16865-PB | 1..247 | 1..247 | 1280 | 100 | Plus |
CG16865-PA | 247 | CG16865-PA | 1..247 | 1..247 | 1280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18239-PA | 261 | GI18239-PA | 1..261 | 1..247 | 952 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21231-PA | 250 | GL21231-PA | 1..250 | 1..247 | 1044 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14184-PA | 250 | GA14184-PA | 1..250 | 1..247 | 1033 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15233-PA | 247 | GM15233-PA | 1..247 | 1..247 | 1293 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23925-PA | 247 | GD23925-PA | 1..247 | 1..247 | 1293 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18145-PA | 252 | GJ18145-PA | 1..252 | 1..247 | 1015 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24797-PA | 250 | GK24797-PA | 1..250 | 1..247 | 1036 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18683-PA | 247 | GE18683-PA | 1..247 | 1..247 | 1271 | 96.4 | Plus |
Translation from 119 to 862
> RE60835.hyp MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLER*