![]() | BDGP Sequence Production Resources |
Search the DGRC for RE60872
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 608 |
Well: | 72 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2617-RA |
Protein status: | RE60872.pep: gold |
Sequenced Size: | 1279 |
Gene | Date | Evidence |
---|---|---|
CG2617 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2617 | 2002-04-26 | Blastp of sequenced clone |
CG2617 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2617 | 2008-04-29 | Release 5.5 accounting |
CG2617 | 2008-08-15 | Release 5.9 accounting |
CG2617 | 2008-12-18 | 5.12 accounting |
1279 bp (1279 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113533
> RE60872.complete ACACTAAGCGGCCGGCGTTCTTGTTTTGATTTTGTGTTTCTTCCTTTTCT TAATTCGAGGACAGTATGAGCCCCCCGCCATGCTGGACGCTCTAATTCGG GCAGCGGAGCTTGTGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGAT TGATGCAGTGATTACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCG TCGGCTTCTGTTTGGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGA TGCGCGGTCAGGAATATCAACGAGGGCATCCGCGACTTGGGCCTCATCAC GCTAGATGTGGCGGACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGA ATGTACTCGATTTTGGTCACTGCATATCCCGATTCATCTGCAACTTACTC ATCGATCTGGGTGATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGC CATACTATTCCTCTGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCG TGGCCCATGGCTTGAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGA TTGGCCCTGCTCCTCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGAT GCTCATCTACCTGCTGCAACGTGGACGCATTGAAATCTCGACGAAGACGC AAAGCGTTTACCTATGGACCCATCATAAATTGCAACACTTCATACACAAT GTTTGGTATGTGTCAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGT CGTGTGCATGGCTCAAAGCAGGAACGTAGTAGTCATGCCATGCCGGCACC TCTGCCTCTGCAAAGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGAC CGCTGTCCTGTCTGCAGGCACAACATTACGTCGTTCCTGTCAGTTTACGT TTGATATATAAGACTGCCAATTGGAATTTAACTTATAAGTAATTATGATT CTCAGAAGTTAACCAAATGTCTTTGGTTAAGACACTTGTAATAGAAAAAA CAAATAATCTTTACAAAGCAGAACAGACAAAACATTTTAATGCAGCTTTC AATTCCCAGACACCTAAAATATCAAGTAAAACAAGTTAAATTGTTTTATG TATTTATTTCAAACCAATGAAAATATACGATTTGTTTTGTATACATTTAT GTAAATACGGTTTGGTTTTGCGTATAACTAATTTGCTCAAAAGACAGATA TAGAAAAAACGTTTGTTTTGGGCTTACATCGTTTAAGTATATATAATTAA AGATTAAATCAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 20680840..20682099 | 1..1260 | 6270 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20682370..20683629 | 1..1260 | 6300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20682370..20683629 | 1..1260 | 6300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1459..1678 | 980..1208 | 112 | 56 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20680840..20682100 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..825 | 80..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..825 | 80..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..825 | 80..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..825 | 80..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..825 | 80..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..1263 | 1..1262 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..1260 | 1..1260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 3..1262 | 1..1260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 1..1263 | 1..1262 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2617-RA | 3..1262 | 1..1260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20682370..20683630 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20682370..20683630 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20682370..20683630 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20682370..20683630 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20682370..20683630 | 1..1263 | 99 | Plus |
Translation from 79 to 903
> RE60872.pep MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ LVLLLEDRCPVCRHNITSFLSVYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15350-PA | 273 | GF15350-PA | 1..273 | 1..274 | 724 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21247-PA | 274 | GG21247-PA | 1..274 | 1..274 | 1159 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10878-PA | 290 | GH10878-PA | 1..289 | 1..273 | 485 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2617-PB | 274 | CG2617-PB | 1..274 | 1..274 | 1442 | 100 | Plus |
CG2617-PA | 274 | CG2617-PA | 1..274 | 1..274 | 1442 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18251-PA | 290 | GI18251-PA | 1..289 | 1..273 | 444 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18515-PA | 207 | GL18515-PA | 41..207 | 114..274 | 427 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15404-PA | 265 | GA15404-PA | 2..265 | 1..274 | 553 | 47 | Plus |
Dpse\GA25668-PA | 265 | GA25668-PA | 2..265 | 1..274 | 550 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23364-PA | 271 | GM23364-PA | 1..271 | 1..274 | 1135 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24275-PA | 267 | GD24275-PA | 1..267 | 1..274 | 987 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22999-PA | 290 | GJ22999-PA | 1..289 | 1..273 | 514 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19052-PA | 276 | GK19052-PA | 1..276 | 1..274 | 561 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12341-PA | 276 | GE12341-PA | 3..276 | 1..274 | 1134 | 82.5 | Plus |
Translation from 79 to 903
> RE60872.hyp MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ LVLLLEDRCPVCRHNITSFLSVYV*