Clone RE60872 Report

Search the DGRC for RE60872

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:608
Well:72
Vector:pFlc-1
Associated Gene/TranscriptCG2617-RA
Protein status:RE60872.pep: gold
Sequenced Size:1279

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2617 2002-01-01 Sim4 clustering to Release 2
CG2617 2002-04-26 Blastp of sequenced clone
CG2617 2003-01-01 Sim4 clustering to Release 3
CG2617 2008-04-29 Release 5.5 accounting
CG2617 2008-08-15 Release 5.9 accounting
CG2617 2008-12-18 5.12 accounting

Clone Sequence Records

RE60872.complete Sequence

1279 bp (1279 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113533

> RE60872.complete
ACACTAAGCGGCCGGCGTTCTTGTTTTGATTTTGTGTTTCTTCCTTTTCT
TAATTCGAGGACAGTATGAGCCCCCCGCCATGCTGGACGCTCTAATTCGG
GCAGCGGAGCTTGTGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGAT
TGATGCAGTGATTACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCG
TCGGCTTCTGTTTGGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGA
TGCGCGGTCAGGAATATCAACGAGGGCATCCGCGACTTGGGCCTCATCAC
GCTAGATGTGGCGGACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGA
ATGTACTCGATTTTGGTCACTGCATATCCCGATTCATCTGCAACTTACTC
ATCGATCTGGGTGATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGC
CATACTATTCCTCTGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCG
TGGCCCATGGCTTGAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGA
TTGGCCCTGCTCCTCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGAT
GCTCATCTACCTGCTGCAACGTGGACGCATTGAAATCTCGACGAAGACGC
AAAGCGTTTACCTATGGACCCATCATAAATTGCAACACTTCATACACAAT
GTTTGGTATGTGTCAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGT
CGTGTGCATGGCTCAAAGCAGGAACGTAGTAGTCATGCCATGCCGGCACC
TCTGCCTCTGCAAAGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGAC
CGCTGTCCTGTCTGCAGGCACAACATTACGTCGTTCCTGTCAGTTTACGT
TTGATATATAAGACTGCCAATTGGAATTTAACTTATAAGTAATTATGATT
CTCAGAAGTTAACCAAATGTCTTTGGTTAAGACACTTGTAATAGAAAAAA
CAAATAATCTTTACAAAGCAGAACAGACAAAACATTTTAATGCAGCTTTC
AATTCCCAGACACCTAAAATATCAAGTAAAACAAGTTAAATTGTTTTATG
TATTTATTTCAAACCAATGAAAATATACGATTTGTTTTGTATACATTTAT
GTAAATACGGTTTGGTTTTGCGTATAACTAATTTGCTCAAAAGACAGATA
TAGAAAAAACGTTTGTTTTGGGCTTACATCGTTTAAGTATATATAATTAA
AGATTAAATCAAGAAAAAAAAAAAAAAAA

RE60872.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2617-RA 1260 CG2617-RA 1..1260 1..1260 6300 100 Plus
Hr38-RC 5184 Hr38-RC 5017..5184 1260..1093 840 100 Minus
Hr38-RD 6872 Hr38-RD 6705..6872 1260..1093 840 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20680840..20682099 1..1260 6270 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20682370..20683629 1..1260 6300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20682370..20683629 1..1260 6300 100 Plus
Blast to na_te.dros performed 2019-03-15 20:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1459..1678 980..1208 112 56 Plus

RE60872.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:06:55 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20680840..20682100 1..1263 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:15 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..825 80..904 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:49 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..825 80..904 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:37 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..825 80..904 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:20 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..825 80..904 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:18 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..825 80..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:22 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..1263 1..1262 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:49 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..1260 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:37 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 3..1262 1..1260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:21 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 1..1263 1..1262 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:18 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 3..1262 1..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:55 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20682370..20683630 1..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:55 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20682370..20683630 1..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:55 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20682370..20683630 1..1263 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:37 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20682370..20683630 1..1263 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:54 Download gff for RE60872.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20682370..20683630 1..1263 99   Plus

RE60872.pep Sequence

Translation from 79 to 903

> RE60872.pep
MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR
KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS
RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS
AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK
LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ
LVLLLEDRCPVCRHNITSFLSVYV*

RE60872.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15350-PA 273 GF15350-PA 1..273 1..274 724 54 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21247-PA 274 GG21247-PA 1..274 1..274 1159 82.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10878-PA 290 GH10878-PA 1..289 1..273 485 41.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2617-PB 274 CG2617-PB 1..274 1..274 1442 100 Plus
CG2617-PA 274 CG2617-PA 1..274 1..274 1442 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18251-PA 290 GI18251-PA 1..289 1..273 444 41.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18515-PA 207 GL18515-PA 41..207 114..274 427 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15404-PA 265 GA15404-PA 2..265 1..274 553 47 Plus
Dpse\GA25668-PA 265 GA25668-PA 2..265 1..274 550 46.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23364-PA 271 GM23364-PA 1..271 1..274 1135 84.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24275-PA 267 GD24275-PA 1..267 1..274 987 76.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22999-PA 290 GJ22999-PA 1..289 1..273 514 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19052-PA 276 GK19052-PA 1..276 1..274 561 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12341-PA 276 GE12341-PA 3..276 1..274 1134 82.5 Plus

RE60872.hyp Sequence

Translation from 79 to 903

> RE60872.hyp
MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR
KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS
RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS
AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK
LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ
LVLLLEDRCPVCRHNITSFLSVYV*

RE60872.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2617-PB 274 CG2617-PB 1..274 1..274 1442 100 Plus
CG2617-PA 274 CG2617-PA 1..274 1..274 1442 100 Plus