BDGP Sequence Production Resources |
Search the DGRC for RE60882
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 608 |
Well: | 82 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(2)34Fc-RA |
Protein status: | RE60882.pep: gold |
Sequenced Size: | 669 |
Gene | Date | Evidence |
---|---|---|
CG7532 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7532 | 2002-04-26 | Blastp of sequenced clone |
CG7532 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7532 | 2008-04-29 | Release 5.5 accounting |
CG7532 | 2008-08-15 | Release 5.9 accounting |
CG7532 | 2008-12-18 | 5.12 accounting |
669 bp (669 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113534
> RE60882.complete AGCTCATTTCAAGTTTTTCTTTTCTGCCGCTTGTGTGTGTGTATTTCTGA TCGATATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGGCCATCAGTGTC CACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGTGACCTGACGCC CCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTACAGCATCTCCG GACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGACGCTGGGCGGC GATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGCCAGAACCGCGT CGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCAGACCTTGGACT GCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGCAAAAGGGCAAG CCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCAGGCTACAAGGG CAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATTCGTTTACTGGG TGGGTCGCGTCACAAAAGACATCGATGTGGAGTAGTGCTTGTGATAGATG TTTTCATGATTTGTTCAAAATCCTACAAGTCTTTGTTTAGCGTTAATGTT CCGATTAGCTTTGGAGCGTAGTATTTTTGAAAATAAAATCAAAAAGTTCG TTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7532-RA | 753 | CG7532-RA | 28..686 | 1..659 | 3280 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 14347914..14348445 | 653..122 | 2645 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 14348508..14348583 | 128..53 | 380 | 100 | Minus |
chr2L | 23010047 | chr2L | 14350251..14350310 | 60..1 | 270 | 96.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 14349108..14349645 | 659..122 | 2675 | 99.8 | Minus |
2L | 23513712 | 2L | 14349708..14349783 | 128..53 | 380 | 100 | Minus |
2L | 23513712 | 2L | 14351451..14351510 | 60..1 | 270 | 96.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 14349108..14349645 | 659..122 | 2675 | 99.8 | Minus |
2L | 23513712 | 2L | 14349708..14349783 | 128..53 | 380 | 100 | Minus |
2L | 23513712 | 2L | 14351451..14351510 | 60..1 | 270 | 96.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker | 7256 | Stalker STALKER 7256bp | 590..667 | 107..25 | 133 | 66.3 | Minus |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 905..982 | 613..536 | 119 | 67.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 14347914..14348439 | 128..653 | 99 | <- | Minus |
chr2L | 14348509..14348582 | 54..127 | 100 | <- | Minus |
chr2L | 14350258..14350310 | 1..53 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7532-RA | 1..480 | 56..535 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 1..480 | 56..535 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 1..480 | 56..535 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7532-RA | 1..480 | 56..535 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 1..480 | 56..535 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7532-RA | 1..653 | 1..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 1..653 | 1..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 4..656 | 1..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7532-RA | 1..653 | 1..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(2)34Fc-RA | 4..656 | 1..653 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14349114..14349639 | 128..653 | 100 | <- | Minus |
2L | 14349709..14349782 | 54..127 | 100 | <- | Minus |
2L | 14351458..14351510 | 1..53 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14349114..14349639 | 128..653 | 100 | <- | Minus |
2L | 14349709..14349782 | 54..127 | 100 | <- | Minus |
2L | 14351458..14351510 | 1..53 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14349114..14349639 | 128..653 | 100 | <- | Minus |
2L | 14349709..14349782 | 54..127 | 100 | <- | Minus |
2L | 14351458..14351510 | 1..53 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 14349114..14349639 | 128..653 | 100 | <- | Minus |
arm_2L | 14349709..14349782 | 54..127 | 100 | <- | Minus |
arm_2L | 14351458..14351510 | 1..53 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14349114..14349639 | 128..653 | 100 | <- | Minus |
2L | 14349709..14349782 | 54..127 | 100 | <- | Minus |
2L | 14351458..14351510 | 1..53 | 100 | Minus |
Translation from 0 to 534
> RE60882.hyp AHFKFFFSAACVCVFLIDMFRLLVLAACLAISVHAYSDGAPKAACRDLTP QHGAKLQVTKPPYSISGPSHVRSDQKLTLTLGGDEFLGFMIQARDGQNRV VGQFQVVDSVHSQTLDCSGKDDTITHLSAQKGKPLTGITFDWIPPAGYKG NVKFMATVVQTGFVYWVGRVTKDIDVE*
Translation from 55 to 534
> RE60882.pep MFRLLVLAACLAISVHAYSDGAPKAACRDLTPQHGAKLQVTKPPYSISGP SHVRSDQKLTLTLGGDEFLGFMIQARDGQNRVVGQFQVVDSVHSQTLDCS GKDDTITHLSAQKGKPLTGITFDWIPPAGYKGNVKFMATVVQTGFVYWVG RVTKDIDVE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14493-PA | 159 | GF14493-PA | 1..159 | 1..159 | 766 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10152-PA | 159 | GG10152-PA | 1..159 | 1..159 | 763 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10402-PA | 143 | GH10402-PA | 1..143 | 1..159 | 646 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(2)34Fc-PB | 159 | CG7532-PB | 1..159 | 1..159 | 836 | 100 | Plus |
l(2)34Fc-PA | 159 | CG7532-PA | 1..159 | 1..159 | 836 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17382-PA | 159 | GI17382-PA | 1..159 | 1..159 | 741 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21051-PA | 159 | GL21051-PA | 1..159 | 1..159 | 736 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20419-PA | 159 | GA20419-PA | 1..159 | 1..159 | 723 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14866-PA | 163 | GM14866-PA | 5..163 | 1..159 | 836 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22011-PA | 163 | GD22011-PA | 5..163 | 1..159 | 836 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18058-PA | 159 | GJ18058-PA | 1..159 | 1..159 | 707 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18114-PA | 158 | GK18114-PA | 1..158 | 1..159 | 681 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25048-PA | 159 | GE25048-PA | 1..159 | 1..159 | 828 | 98.1 | Plus |