BDGP Sequence Production Resources |
Search the DGRC for RE60886
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 608 |
Well: | 86 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Crk-RA |
Protein status: | RE60886.pep: gold |
Sequenced Size: | 1219 |
Gene | Date | Evidence |
---|---|---|
CG1587 | 2004-03-31 | Blastp of sequenced clone |
Crk | 2008-04-29 | Release 5.5 accounting |
Crk | 2008-08-15 | Release 5.9 accounting |
Crk | 2008-12-18 | 5.12 accounting |
1219 bp (1219 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012456
> RE60886.complete AAGTGGAAATAATCGATCAAACATTATCGATAGTGTTTCTATGTGTGGCC CAGCCAGATACACATATAAAAGGCAAATGTTTTAAGGCCAGAAATTCGAA AATGAAATCACTGAAGAATTCTGGTATATAATAGGCTGTATGCTATATTT GCATTATATCACATAATTTCTATTTATTTAATCTGGACGGAATTTGTTGT AATTTGTCTAAGATAAACCTTAAACGGAAATGGATACATTTGACGTTTCT GATAGGAACAGCTGGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGA AGTTTTGATGAACGAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTA ACTCGATAGCAGGGGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTT AGCAACTACATCATTAACAAAGTTCAACAACAGGATCAAATCGTTTACCG CATTGGGGATCAGTCTTTTGACAATCTACCGAAACTCTTAACTTTTTACA CTCTTCATTATTTGGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGG GTGGAAAAAGTAATAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGA TTTACCTTTTCAAAGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGG ATCAATGGTGGACTGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCG GTTCCCTATATACAACAGTATGACGATTATATGGATGAAGATGCTATTGA TAAAAACGAACCTTCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTC TTAAAAGGACAGATTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAA CAGTCAAGGGTCCCTAACGCATACGATAAGACTGCATTAAAATTGGAAAT AGGTGACATTATTAAAGTCACTAAAACAAACATTAATGGGCAATGGGAGG GAGAATTAAATGGAAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTT GTCGATGATTGTGATTTAAGCAAAAACTCCACAGAAATATGCTAAATAGG AAGGAATGGAAGGAATTTCTTTTGATAATTTTGATTTTTGAGCTAATTGT ATGATTAATAAGTTGTGCATACCAATTGTTAACATAATCAGAAAATTAAA ATCTTATTAAGTAAAATAAAAATAAACGGGTACGAAGGACATAATAAAAA AAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Crk-RA | 1503 | Crk-RA | 257..1455 | 1..1199 | 5995 | 100 | Plus |
Crk.g | 1375 | Crk.g | 68..887 | 1..820 | 4100 | 100 | Plus |
Crk.a | 1387 | Crk.a | 1..719 | 1..719 | 3595 | 100 | Plus |
Crk.a | 1387 | Crk.a | 859..1339 | 719..1199 | 2405 | 100 | Plus |
Crk.g | 1375 | Crk.g | 949..1327 | 821..1199 | 1895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 233385..233763 | 821..1199 | 1895 | 100 | Plus |
chr4 | 1351717 | chr4 | 230820..231080 | 1..261 | 1305 | 100 | Plus |
chr4 | 1351717 | chr4 | 232182..232389 | 383..590 | 1040 | 100 | Plus |
chr4 | 1351717 | chr4 | 232448..232576 | 590..718 | 645 | 100 | Plus |
chr4 | 1351717 | chr4 | 231150..231274 | 260..384 | 625 | 100 | Plus |
chr4 | 1351717 | chr4 | 233219..233323 | 716..820 | 525 | 100 | Plus |
chr4 | 1351717 | chr4 | 236551..236646 | 383..478 | 435 | 96.9 | Plus |
chr4 | 1351717 | chr4 | 236762..236820 | 590..648 | 280 | 98.3 | Plus |
chr4 | 1351717 | chr4 | 236645..236705 | 528..588 | 275 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 212791..213169 | 821..1199 | 1895 | 100 | Plus |
4 | 1348131 | 4 | 210226..210486 | 1..261 | 1305 | 100 | Plus |
4 | 1348131 | 4 | 211588..211795 | 383..590 | 1040 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 590..718 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210680 | 260..384 | 625 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 716..820 | 525 | 100 | Plus |
4 | 1348131 | 4 | 215957..216052 | 383..478 | 435 | 96.9 | Plus |
4 | 1348131 | 4 | 216168..216226 | 590..648 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 528..588 | 275 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 212791..213169 | 821..1199 | 1895 | 100 | Plus |
4 | 1331231 | 4 | 210226..210486 | 1..261 | 1305 | 100 | Plus |
4 | 1331231 | 4 | 211588..211795 | 383..590 | 1040 | 100 | Plus |
4 | 1331231 | 4 | 211854..211982 | 590..718 | 645 | 100 | Plus |
4 | 1331231 | 4 | 210556..210680 | 260..384 | 625 | 100 | Plus |
4 | 1331231 | 4 | 212625..212729 | 716..820 | 525 | 100 | Plus |
4 | 1331231 | 4 | 215957..216052 | 383..478 | 435 | 96.8 | Plus |
4 | 1331231 | 4 | 216168..216226 | 590..648 | 280 | 98.3 | Plus |
4 | 1331231 | 4 | 216051..216111 | 528..588 | 275 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1553..1607 | 1119..1060 | 118 | 70 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 230820..231080 | 1..261 | 100 | -> | Plus |
chr4 | 231152..231274 | 262..384 | 100 | -> | Plus |
chr4 | 232184..232388 | 385..589 | 100 | -> | Plus |
chr4 | 232448..232576 | 590..718 | 100 | -> | Plus |
chr4 | 233222..233323 | 719..820 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..816 | 230..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..816 | 230..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RC | 1..816 | 230..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..816 | 230..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RC | 1..816 | 230..1045 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..1129 | 70..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..1195 | 1..1195 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 3..1197 | 1..1195 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 1..1129 | 70..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crk-RA | 3..1197 | 1..1195 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 210558..210680 | 262..384 | 100 | -> | Plus |
4 | 211590..211794 | 385..589 | 100 | -> | Plus |
4 | 211854..211982 | 590..718 | 100 | -> | Plus |
4 | 212628..212729 | 719..820 | 100 | -> | Plus |
4 | 210226..210486 | 1..261 | 100 | -> | Plus |
4 | 212791..213169 | 821..1203 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 210558..210680 | 262..384 | 100 | -> | Plus |
4 | 211590..211794 | 385..589 | 100 | -> | Plus |
4 | 211854..211982 | 590..718 | 100 | -> | Plus |
4 | 212628..212729 | 719..820 | 100 | -> | Plus |
4 | 210226..210486 | 1..261 | 100 | -> | Plus |
4 | 212791..213169 | 821..1203 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 210558..210680 | 262..384 | 100 | -> | Plus |
4 | 211590..211794 | 385..589 | 100 | -> | Plus |
4 | 211854..211982 | 590..718 | 100 | -> | Plus |
4 | 212628..212729 | 719..820 | 100 | -> | Plus |
4 | 210226..210486 | 1..261 | 100 | -> | Plus |
4 | 212791..213169 | 821..1203 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 230852..231112 | 1..261 | 100 | -> | Plus |
arm_4 | 231184..231306 | 262..384 | 100 | -> | Plus |
arm_4 | 232216..232420 | 385..589 | 100 | -> | Plus |
arm_4 | 232480..232608 | 590..718 | 100 | -> | Plus |
arm_4 | 233254..233355 | 719..820 | 100 | -> | Plus |
arm_4 | 233417..233795 | 821..1203 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 211590..211794 | 385..589 | 100 | -> | Plus |
4 | 211854..211982 | 590..718 | 100 | -> | Plus |
4 | 212628..212729 | 719..820 | 100 | -> | Plus |
4 | 210226..210486 | 1..261 | 100 | -> | Plus |
4 | 210558..210680 | 262..384 | 100 | -> | Plus |
4 | 212791..213169 | 821..1203 | 98 | Plus |
Translation from 229 to 1044
> RE60886.hyp MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF PFTHVEFVDDCDLSKNSTEIC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Crk-PA | 271 | CG1587-PA | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PC | 271 | CG1587-PC | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PE | 263 | CG1587-PE | 1..263 | 1..271 | 1367 | 97 | Plus |
Crk-PB | 253 | CG1587-PB | 1..253 | 1..271 | 1318 | 93.4 | Plus |
Crk-PD | 184 | CG1587-PD | 1..168 | 1..168 | 864 | 97 | Plus |
Translation from 229 to 1044
> RE60886.pep MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF PFTHVEFVDDCDLSKNSTEIC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23415-PA | 342 | GF23415-PA | 1..256 | 1..261 | 1113 | 79.3 | Plus |
Dana\GF11180-PA | 211 | GF11180-PA | 60..209 | 12..164 | 163 | 28.1 | Plus |
Dana\GF14287-PA | 938 | GF14287-PA | 240..322 | 10..90 | 147 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16379-PA | 269 | GG16379-PA | 1..268 | 1..270 | 1376 | 95.6 | Plus |
Dere\GG22486-PA | 211 | GG22486-PA | 60..209 | 12..164 | 163 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23941-PA | 277 | GH23941-PA | 1..267 | 1..266 | 1230 | 84.7 | Plus |
Dgri\GH22624-PA | 211 | GH22624-PA | 58..209 | 10..164 | 163 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Crk-PA | 271 | CG1587-PA | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PC | 271 | CG1587-PC | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PE | 263 | CG1587-PE | 1..263 | 1..271 | 1367 | 97 | Plus |
Crk-PB | 253 | CG1587-PB | 1..253 | 1..271 | 1318 | 93.4 | Plus |
Crk-PD | 184 | CG1587-PD | 1..168 | 1..168 | 864 | 97 | Plus |
Crk-PH | 64 | CG1587-PH | 1..52 | 1..52 | 274 | 100 | Plus |
Crk-PG | 84 | CG1587-PG | 1..51 | 1..51 | 269 | 100 | Plus |
drk-PD | 211 | CG6033-PD | 58..209 | 10..164 | 171 | 27.8 | Plus |
drk-PF | 211 | CG6033-PF | 58..209 | 10..164 | 171 | 27.8 | Plus |
drk-PA | 211 | CG6033-PA | 58..209 | 10..164 | 171 | 27.8 | Plus |
drk-PB | 211 | CG6033-PB | 58..209 | 10..164 | 171 | 27.8 | Plus |
drk-PC | 211 | CG6033-PC | 58..209 | 10..164 | 171 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14066-PA | 293 | GI14066-PA | 1..279 | 1..271 | 1179 | 79.5 | Plus |
Dmoj\GI21333-PA | 211 | GI21333-PA | 60..209 | 12..164 | 160 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18154-PA | 297 | GL18154-PA | 1..285 | 1..270 | 1244 | 82.1 | Plus |
Dper\GL17069-PA | 211 | GL17069-PA | 60..209 | 12..164 | 164 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13993-PA | 297 | GA13993-PA | 1..285 | 1..270 | 1244 | 82.1 | Plus |
Dpse\GA19310-PA | 211 | GA19310-PA | 60..209 | 12..164 | 164 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23242-PA | 271 | GM23242-PA | 1..270 | 1..270 | 1441 | 100 | Plus |
Dsec\GM20273-PA | 211 | GM20273-PA | 60..209 | 12..164 | 164 | 28.1 | Plus |
Dsec\GM17975-PA | 870 | GM17975-PA | 238..330 | 10..100 | 149 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14194-PA | 108 | GD14194-PA | 1..107 | 164..270 | 567 | 100 | Plus |
Dsim\drk-PA | 182 | GD25755-PA | 29..180 | 10..164 | 162 | 27.8 | Plus |
Dsim\GD22611-PA | 944 | GD22611-PA | 238..320 | 10..90 | 147 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18986-PA | 298 | GJ18986-PA | 1..283 | 1..264 | 1205 | 80.6 | Plus |
Dvir\GJ19679-PA | 211 | GJ19679-PA | 58..209 | 10..164 | 163 | 27.8 | Plus |
Dvir\GJ12514-PA | 952 | GJ12514-PA | 237..319 | 10..90 | 148 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13611-PA | 280 | GK13611-PA | 1..267 | 1..270 | 1248 | 85.9 | Plus |
Dwil\GK10660-PA | 211 | GK10660-PA | 58..209 | 10..164 | 163 | 27.8 | Plus |
Dwil\GK15403-PA | 969 | GK15403-PA | 248..330 | 10..90 | 147 | 37.2 | Plus |