Clone RE61294 Report

Search the DGRC for RE61294

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:612
Well:94
Vector:pFlc-1
Associated Gene/TranscriptCG8112-RB
Protein status:RE61294.pep: gold
Preliminary Size:1885
Sequenced Size:2102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8112 2002-01-01 Sim4 clustering to Release 2
CG8112 2002-04-26 Blastp of sequenced clone
CG8112 2003-01-01 Sim4 clustering to Release 3
CG8112 2008-04-29 Release 5.5 accounting
CG8112 2008-08-15 Release 5.9 accounting
CG8112 2008-12-18 5.12 accounting

Clone Sequence Records

RE61294.complete Sequence

2102 bp (2102 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113537

> RE61294.complete
ATAGATTTCGCTTCGGTCCCGGTTTGTTTTGGTCAGCATTTACTCAACAT
ATTTTAGGAATAATGAACCCCCTTTGCCTGAGACTCTGATGGTTTGCAGC
ACAATCTTCGATGTTCGAATTCGGCGCCCCTGCTGATAAGTCAGCAAAGC
GCCGTTATCGTCGCGGATTTGAAAACAACACAGCCGCACCAGCGACGCGT
ACATTGTGCGAACTGACGTCCCCGGGGGCAGTCGCTGCTGTAAAATCCAC
CAGTTGGATAGGATTGACATTAACACCAAAGGAACAGTTTCACTAGCAGA
AGCGCACATAATTTGAGAACCAGACATGGCCGCTGAAAGGCAGGAGAAAC
GAGGCGAGGAGGAGACGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGC
GACAAGCTTCAGAAGTTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCG
GCTGTCCTGCATGGTAGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGT
TGCGTGCCCACGAGTTCCCCAACTTCGAGAGATCCGATCGGAAGAGCACC
TGGCACAATCGCGTGACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCAC
AAATGGCCATGCAAATGGCACGCATCCAAGGCCACCGATCCAAAGCGAAA
CATCCGCTCGTAAGCAGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCC
CGGGAATCGTACCTCACCGCTCTGCTGCAGGTGGAGCACATGCGCACCAT
CTACCACATCTTTTATATTATTCTGGTCATGTTCCTGCTGAACGTGATCT
GCTACGATTACTTTGTTGATGGCCGCTTCGATCTGGGACTTGGCACCTTC
CGCGGCGGACTGCGCCGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGA
GCATGTCTTCGTCCTGGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGG
TCAGGCACAAACTGAAACCGCACAGTTCTCTCCAGCGCTTTTGGTCGCAC
AGCTGTCTCATCCTGTACATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTC
GACTTCGCTGTGCCTCAAGTTCAACCTGCCCTTTGTGAGTGCGTGTATCC
TGTTGCTCGAGAGCACGCGACTGCTGATGAAGATGCACGCCTTTGTGAGG
TACAATGCTGAGCGCGTTCTGAATGGCAAGGCCAAGAAGGAAGATGCGGA
GGAGGAGAAAGAAGGCAGTGAGCGACCGTTTGTGCCGCCGCTGAGCTGTT
ACACGTACTTTTTGTTTGCACCCACGCTTATCTACCGAGACAGCTACCCG
CGCACCTCCCACATCCGCTGGAAGTTTGCCCTGAATCGACTGTTGGAGGT
GGTGGCCATAGCCTTCCTGTACGCGTTCATCCATGAGCGGCACATCCACG
AGCACTTCGGACAGTACGGACTGGAACCAATGGGACCCTCCCAGCTGATC
CTCAAGCTGTTCGGCATGATGCTGCCCAGCGCGGTGATCTTTCTGTGCGG
CTTCTACCTAATCCTGCACTCGTGGCTGAACTTCACGTCGGAGCTGCTAC
GCTTCGGTGATCGAATGTTCTACAAGGACTGGTGGACGTCGCACACTTAC
GATGGCTACTACAGAAACTGGAATGTCGTCGTGCACGACTGGCTGTACGA
GTACGTGTACAAGGATATGTACACTCATGTGTTCCGAGGTTCCAAGGTGG
CCGCCTCGCTGGCAGTGTTCATGATCTCCGCTGTGGTCCATGAGCAGGTT
CTCGGCTTTGCCCTGCAAATGTTCTTCCCAGTGATGTTCTTCTTCTTTGG
GGTCGTGGGTGTTGCCTTGGTATTCCTAATGCGGAGTGCTCCAAAAGTGA
TGGGCAACATCTTTCTGTGGTTCTCTCTGATCCTGGGAAATGCCACGCTG
ATCTCACTATACGCCATGGAGCATTACGCCCTAAAGAACTGCAACCTAAG
CAACGAGAGTTGGACGTATCGCCTGCTGCCGGCGGTATGGCGCTGCTACA
ATTAGTCAATTAGTTAAACACTACTTTTAAACTGTCTGTACACAGGGCGT
ACGCTTCGATTTGTATTTTAGGTAAATAAACTTAATGAAATTAAAAAAAA
AA

RE61294.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-RA 2097 CG8112-RA 1..2094 1..2094 10455 99.9 Plus
nc_15376.a 674 nc_15376.a 22..674 974..1626 3250 99.8 Plus
Cks85A-RA 727 Cks85A-RA 654..727 2094..2021 370 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4540116..4541233 975..2092 5545 99.7 Plus
chr3R 27901430 chr3R 4538887..4539741 122..976 4260 99.9 Plus
chr3R 27901430 chr3R 4530392..4530478 35..121 420 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8714146..8715265 975..2094 5585 99.9 Plus
3R 32079331 3R 8712918..8713772 122..976 4275 100 Plus
3R 32079331 3R 8704416..8704502 35..121 435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8454977..8456096 975..2094 5585 99.9 Plus
3R 31820162 3R 8453749..8454603 122..976 4275 100 Plus
3R 31820162 3R 8445247..8445333 35..121 435 100 Plus
3R 31820162 3R 8441813..8441848 1..36 180 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:28:38 has no hits.

RE61294.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:29:48 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4526957..4526992 1..36 100 -> Plus
chr3R 4530394..4530478 37..121 98 -> Plus
chr3R 4538887..4539739 122..974 99 -> Plus
chr3R 4540116..4541233 975..2092 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:19:15 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..1680 326..2005 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:18 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..1680 326..2005 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:44 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RB 1..1680 326..2005 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:06 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..1680 326..2005 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:26 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RB 1..1680 326..2005 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:19:15 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..2092 1..2092 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:18 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..2092 1..2092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:44 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RB 1..1956 137..2092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:06 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..2092 1..2092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:26 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RB 1..1956 137..2092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:48 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8700982..8701017 1..36 100 -> Plus
3R 8704418..8704502 37..121 100 -> Plus
3R 8712918..8713770 122..974 100 -> Plus
3R 8714146..8715263 975..2092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:48 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8700982..8701017 1..36 100 -> Plus
3R 8704418..8704502 37..121 100 -> Plus
3R 8712918..8713770 122..974 100 -> Plus
3R 8714146..8715263 975..2092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:48 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8700982..8701017 1..36 100 -> Plus
3R 8704418..8704502 37..121 100 -> Plus
3R 8712918..8713770 122..974 100 -> Plus
3R 8714146..8715263 975..2092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:44 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4526704..4526739 1..36 100 -> Plus
arm_3R 4530140..4530224 37..121 100 -> Plus
arm_3R 4538640..4539492 122..974 100 -> Plus
arm_3R 4539868..4540985 975..2092 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:27 Download gff for RE61294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8453749..8454601 122..974 100 -> Plus
3R 8454977..8456094 975..2092 99   Plus
3R 8441813..8441848 1..36 100 -> Plus
3R 8445249..8445333 37..121 100 -> Plus

RE61294.pep Sequence

Translation from 325 to 2004

> RE61294.pep
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHSSLQRFWSHSCLILYISSQLVFCFVSTSLCLKFN
LPFVSACILLLESTRLLMKMHAFVRYNAERVLNGKAKKEDAEEEKEGSER
PFVPPLSCYTYFLFAPTLIYRDSYPRTSHIRWKFALNRLLEVVAIAFLYA
FIHERHIHEHFGQYGLEPMGPSQLILKLFGMMLPSAVIFLCGFYLILHSW
LNFTSELLRFGDRMFYKDWWTSHTYDGYYRNWNVVVHDWLYEYVYKDMYT
HVFRGSKVAASLAVFMISAVVHEQVLGFALQMFFPVMFFFFGVVGVALVF
LMRSAPKVMGNIFLWFSLILGNATLISLYAMEHYALKNCNLSNESWTYRL
LPAVWRCYN*

RE61294.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18181-PA 555 GF18181-PA 4..555 6..559 2427 83 Plus
Dana\GF15369-PA 570 GF15369-PA 298..542 297..529 327 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12153-PA 557 GG12153-PA 2..557 4..559 2736 94.4 Plus
Dere\GG22776-PA 611 GG22776-PA 347..591 291..529 333 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18571-PA 567 GH18571-PA 2..567 10..559 2150 73 Plus
Dgri\GH13104-PA 565 GH13104-PA 290..544 278..529 320 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-PB 559 CG8112-PB 1..559 1..559 2986 100 Plus
CG8112-PD 222 CG8112-PD 1..220 1..220 1149 98.6 Plus
CG8112-PC 218 CG8112-PC 1..216 1..216 1144 100 Plus
mdy-PE 565 CG31991-PE 297..545 281..529 350 35.8 Plus
mdy-PC 565 CG31991-PC 297..545 281..529 350 35.8 Plus
mdy-PB 565 CG31991-PB 297..545 281..529 350 35.8 Plus
mdy-PA 565 CG31991-PA 297..545 281..529 350 35.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24769-PA 569 GI24769-PA 2..569 3..559 2169 70.5 Plus
Dmoj\GI14192-PA 561 GI14192-PA 298..542 291..529 315 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12471-PA 563 GL12471-PA 6..563 4..559 2434 81.6 Plus
Dper\GL18793-PA 558 GL18793-PA 317..538 311..529 318 36.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20833-PA 565 GA20833-PA 12..565 8..559 2420 81.8 Plus
Dpse\GA16599-PA 558 GA16599-PA 317..538 311..529 318 36.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23753-PA 558 GM23753-PA 1..558 1..559 2925 97.9 Plus
Dsec\GM17212-PA 607 GM17212-PA 339..587 281..529 339 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18564-PA 305 GD18564-PA 1..302 1..302 1511 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22674-PA 574 GJ22674-PA 1..574 1..559 2128 73.2 Plus
Dvir\GJ17509-PA 565 GJ17509-PA 303..546 289..529 327 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11809-PA 577 GK11809-PA 11..577 5..559 2206 72.8 Plus
Dwil\GK18239-PA 566 GK18239-PA 300..565 296..549 316 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25896-PA 559 GE25896-PA 1..559 1..559 2880 95.3 Plus
Dyak\GE12771-PA 609 GE12771-PA 341..589 281..529 330 35 Plus

RE61294.hyp Sequence

Translation from 325 to 2004

> RE61294.hyp
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHSSLQRFWSHSCLILYISSQLVFCFVSTSLCLKFN
LPFVSACILLLESTRLLMKMHAFVRYNAERVLNGKAKKEDAEEEKEGSER
PFVPPLSCYTYFLFAPTLIYRDSYPRTSHIRWKFALNRLLEVVAIAFLYA
FIHERHIHEHFGQYGLEPMGPSQLILKLFGMMLPSAVIFLCGFYLILHSW
LNFTSELLRFGDRMFYKDWWTSHTYDGYYRNWNVVVHDWLYEYVYKDMYT
HVFRGSKVAASLAVFMISAVVHEQVLGFALQMFFPVMFFFFGVVGVALVF
LMRSAPKVMGNIFLWFSLILGNATLISLYAMEHYALKNCNLSNESWTYRL
LPAVWRCYN*

RE61294.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-PB 559 CG8112-PB 1..559 1..559 2986 100 Plus
CG8112-PD 222 CG8112-PD 1..220 1..220 1149 98.6 Plus
CG8112-PC 218 CG8112-PC 1..216 1..216 1144 100 Plus
mdy-PE 565 CG31991-PE 297..545 281..529 350 35.8 Plus
mdy-PC 565 CG31991-PC 297..545 281..529 350 35.8 Plus