BDGP Sequence Production Resources |
Search the DGRC for RE61424
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 614 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1888-RA |
Protein status: | RE61424.pep: gold |
Preliminary Size: | 1159 |
Sequenced Size: | 1375 |
Gene | Date | Evidence |
---|---|---|
CG1888 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1888 | 2002-04-26 | Blastp of sequenced clone |
CG1888 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1888 | 2008-04-29 | Release 5.5 accounting |
CG1888 | 2008-08-15 | Release 5.9 accounting |
CG1888 | 2008-12-18 | 5.12 accounting |
1375 bp (1375 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113540
> RE61424.complete AGTGTTGCACTCTCATTCGTGACGAAAGGATGTACGCCCGGTTGTAGTCG AATGAATCCGTGTACATCATCGCCCCCACAGATGCCACGTGGCTCTGGAT CCGTGGAAAACTGCAACCTGGAATCTGACGGCCTGCAACTGCTCGAGATG GCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCTTCTGCAGTCGTGGGA TGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAGCCATTAACGTGGACG AGCTGCAGATGATCAAACGTCATCATCTGTCCGAGTTGCTGCGAAACTTT CGCTTTGGAACCCGCATTCGCTTCGAGCATCACTTGGAGCGCTGGCGCCG CTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCCAGGGGTCGAGCCACT GCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAATCGCAATGTCAGGAG CAATCGCCGTTGCACATGGAACAGCCGTCAGAGCAGGAAGAATTGCACAA GCCTGAAGATCTGGTCAAGACAATACCAGCAGAATCGCTGGTGGCCCTCA GTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTGCCTTTGGTCCATCCG CCTGCGCAGATAACCGACGACATAATGATGGTCAAACAGGAGCTGATGCC GATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGGCGGCTGGGTCTTCAG GAGGAACCTCAGGCAACAAGGAGGATGCAACTGCCACTCCTGACCAAGAA GTTAGCATTTTGGGCATTCTGCGATCCTCGGGTATGAAAGCCCAGAGCTT GCTGGAGCGTATTGGCCAGAACGATCCGCTGGACGCCGTGCAGCGCCTTT TGCTCATCCAACTAGTGTGCAGCTACTACGAGGAGAACCAGATGCACCTG ACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGATACTGCAGCTTTTCCC GCAGGAACAGCTCAGCTATTACCGCACCGAGCGAAGGGGTAAGATCTACG TGAGATTCACCAACATGAAGCGAAGCAAGAGGCTCAGTTCGTCGCGCCAG GAACTCAAACGACGCCGTTCCGAGCTGATAAGATCGATTCCCACGGTTCA AGGACACGATGCTAGTGCTAGTGTGAACTTCGCCGGCGACCAAATCTCCA GTCCCGATCGCTCCGATTGATCTGGCTTGTTATGCAGTTGGCAGCTCAAT CCAAAGCCTAAATGCAATGCTTAACTTAAGTTCAACTAGCTACTCGATGT GTAATTTCTTGACTTTATATCTATGAATCGACCATTTATAGGGTATTTTG CGGGTCGACGCGATCCGCCGACTGACGAAACTAAATCGAAACTCAATTTT GGTTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
R1-2 | 3216 | R1-2 R1-2 3216bp | 401..450 | 859..810 | 115 | 70 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5432670..5433794 | 230..1354 | 100 | <- | Minus |
chr2R | 5434224..5434452 | 1..229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1119 | 52..1170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1119 | 52..1170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RB | 1..1119 | 52..1170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1119 | 52..1170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RB | 1..1119 | 52..1170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1354 | 1..1354 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1354 | 1..1354 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 5..1358 | 1..1354 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 1..1354 | 1..1354 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1888-RA | 5..1358 | 1..1354 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9545172..9546296 | 230..1354 | 100 | <- | Minus |
2R | 9546726..9546954 | 1..229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9545172..9546296 | 230..1354 | 100 | <- | Minus |
2R | 9546726..9546954 | 1..229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9545172..9546296 | 230..1354 | 100 | <- | Minus |
2R | 9546726..9546954 | 1..229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5432677..5433801 | 230..1354 | 100 | <- | Minus |
arm_2R | 5434231..5434459 | 1..229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9546371..9547495 | 230..1354 | 100 | <- | Minus |
2R | 9547925..9548153 | 1..229 | 99 | Minus |
Translation from 0 to 1169
> RE61424.hyp SAALSFVTKGCTPGCSRMNPCTSSPPQMPRGSGSVENCNLESDGLQLLEM AGKEDYEELRDLLQSWDVADLLPHLQDEAINVDELQMIKRHHLSELLRNF RFGTRIRFEHHLERWRRWLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQE QSPLHMEQPSEQEELHKPEDLVKTIPAESLVALSDPREMSVPFPLPLVHP PAQITDDIMMVKQELMPMQQTRKPEAVLAAGSSGGTSGNKEDATATPDQE VSILGILRSSGMKAQSLLERIGQNDPLDAVQRLLLIQLVCSYYEENQMHL TLQRSHLLEREILQLFPQEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQ ELKRRRSELIRSIPTVQGHDASASVNFAGDQISSPDRSD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1888-PD | 372 | CG1888-PD | 1..372 | 18..389 | 1927 | 100 | Plus |
CG1888-PC | 372 | CG1888-PC | 1..372 | 18..389 | 1927 | 100 | Plus |
CG1888-PB | 372 | CG1888-PB | 1..372 | 18..389 | 1927 | 100 | Plus |
CG1888-PA | 372 | CG1888-PA | 1..372 | 18..389 | 1927 | 100 | Plus |
Translation from 51 to 1169
> RE61424.pep MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ GHDASASVNFAGDQISSPDRSD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12499-PA | 369 | GF12499-PA | 1..369 | 1..372 | 993 | 59.4 | Plus |
Dana\GF24064-PA | 403 | GF24064-PA | 1..146 | 1..146 | 272 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25280-PA | 373 | GG25280-PA | 1..373 | 1..372 | 1758 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21961-PA | 317 | GH21961-PA | 12..317 | 38..372 | 812 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1888-PD | 372 | CG1888-PD | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PC | 372 | CG1888-PC | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PB | 372 | CG1888-PB | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PA | 372 | CG1888-PA | 1..372 | 1..372 | 1927 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19668-PA | 324 | GI19668-PA | 15..324 | 38..372 | 800 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17313-PA | 347 | GL17313-PA | 26..347 | 31..372 | 976 | 58.4 | Plus |
Dper\GL19272-PA | 308 | GL19272-PA | 1..292 | 33..339 | 609 | 46.5 | Plus |
Dper\GL26442-PA | 326 | GL26442-PA | 168..279 | 209..324 | 170 | 35.3 | Plus |
Dper\GL21085-PA | 339 | GL21085-PA | 181..292 | 209..324 | 168 | 34.5 | Plus |
Dper\GL21222-PA | 375 | GL21222-PA | 217..328 | 209..324 | 168 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15109-PA | 347 | GA15109-PA | 26..347 | 31..372 | 1005 | 59.3 | Plus |
Dpse\GA25896-PA | 277 | GA25896-PA | 1..261 | 33..339 | 564 | 44.3 | Plus |
Dpse\GA29068-PA | 336 | GA29068-PA | 164..281 | 207..324 | 172 | 33.9 | Plus |
Dpse\GA28972-PA | 286 | GA28972-PA | 190..273 | 239..324 | 168 | 38.4 | Plus |
Dpse\GA25839-PA | 71 | GA25839-PA | 1..58 | 281..339 | 142 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20598-PA | 372 | GM20598-PA | 1..372 | 1..372 | 1868 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10071-PA | 372 | GD10071-PA | 1..372 | 1..372 | 1811 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15032-PA | 328 | GJ15032-PA | 19..328 | 33..372 | 798 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21493-PA | 362 | GK21493-PA | 21..362 | 36..372 | 840 | 49.6 | Plus |