Clone RE61424 Report

Search the DGRC for RE61424

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:614
Well:24
Vector:pFlc-1
Associated Gene/TranscriptCG1888-RA
Protein status:RE61424.pep: gold
Preliminary Size:1159
Sequenced Size:1375

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1888 2002-01-01 Sim4 clustering to Release 2
CG1888 2002-04-26 Blastp of sequenced clone
CG1888 2003-01-01 Sim4 clustering to Release 3
CG1888 2008-04-29 Release 5.5 accounting
CG1888 2008-08-15 Release 5.9 accounting
CG1888 2008-12-18 5.12 accounting

Clone Sequence Records

RE61424.complete Sequence

1375 bp (1375 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113540

> RE61424.complete
AGTGTTGCACTCTCATTCGTGACGAAAGGATGTACGCCCGGTTGTAGTCG
AATGAATCCGTGTACATCATCGCCCCCACAGATGCCACGTGGCTCTGGAT
CCGTGGAAAACTGCAACCTGGAATCTGACGGCCTGCAACTGCTCGAGATG
GCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCTTCTGCAGTCGTGGGA
TGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAGCCATTAACGTGGACG
AGCTGCAGATGATCAAACGTCATCATCTGTCCGAGTTGCTGCGAAACTTT
CGCTTTGGAACCCGCATTCGCTTCGAGCATCACTTGGAGCGCTGGCGCCG
CTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCCAGGGGTCGAGCCACT
GCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAATCGCAATGTCAGGAG
CAATCGCCGTTGCACATGGAACAGCCGTCAGAGCAGGAAGAATTGCACAA
GCCTGAAGATCTGGTCAAGACAATACCAGCAGAATCGCTGGTGGCCCTCA
GTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTGCCTTTGGTCCATCCG
CCTGCGCAGATAACCGACGACATAATGATGGTCAAACAGGAGCTGATGCC
GATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGGCGGCTGGGTCTTCAG
GAGGAACCTCAGGCAACAAGGAGGATGCAACTGCCACTCCTGACCAAGAA
GTTAGCATTTTGGGCATTCTGCGATCCTCGGGTATGAAAGCCCAGAGCTT
GCTGGAGCGTATTGGCCAGAACGATCCGCTGGACGCCGTGCAGCGCCTTT
TGCTCATCCAACTAGTGTGCAGCTACTACGAGGAGAACCAGATGCACCTG
ACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGATACTGCAGCTTTTCCC
GCAGGAACAGCTCAGCTATTACCGCACCGAGCGAAGGGGTAAGATCTACG
TGAGATTCACCAACATGAAGCGAAGCAAGAGGCTCAGTTCGTCGCGCCAG
GAACTCAAACGACGCCGTTCCGAGCTGATAAGATCGATTCCCACGGTTCA
AGGACACGATGCTAGTGCTAGTGTGAACTTCGCCGGCGACCAAATCTCCA
GTCCCGATCGCTCCGATTGATCTGGCTTGTTATGCAGTTGGCAGCTCAAT
CCAAAGCCTAAATGCAATGCTTAACTTAAGTTCAACTAGCTACTCGATGT
GTAATTTCTTGACTTTATATCTATGAATCGACCATTTATAGGGTATTTTG
CGGGTCGACGCGATCCGCCGACTGACGAAACTAAATCGAAACTCAATTTT
GGTTAAAAAAAAAAAAAAAAAAAAA

RE61424.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888.c 2294 CG1888.c 671..2025 1..1355 6760 99.9 Plus
CG1888.b 1925 CG1888.b 141..1495 1..1355 6760 99.9 Plus
CG1888-RA 1906 CG1888-RA 237..1591 1..1355 6760 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5432670..5433796 1354..228 5635 100 Minus
chr2R 21145070 chr2R 5434224..5434452 229..1 1130 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:07:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545171..9546298 1355..228 5640 100 Minus
2R 25286936 2R 9546726..9546954 229..1 1130 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9546370..9547497 1355..228 5640 100 Minus
2R 25260384 2R 9547925..9548153 229..1 1130 99.5 Minus
Blast to na_te.dros performed 2019-03-15 20:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 401..450 859..810 115 70 Minus

RE61424.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:27:11 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5432670..5433794 230..1354 100 <- Minus
chr2R 5434224..5434452 1..229 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:34 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1119 52..1170 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:07 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1119 52..1170 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:13:01 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1..1119 52..1170 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:36 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1119 52..1170 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:43 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1..1119 52..1170 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:13 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:07 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:01 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 5..1358 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:36 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:43 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 5..1358 1..1354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:11 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9545172..9546296 230..1354 100 <- Minus
2R 9546726..9546954 1..229 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:11 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9545172..9546296 230..1354 100 <- Minus
2R 9546726..9546954 1..229 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:11 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9545172..9546296 230..1354 100 <- Minus
2R 9546726..9546954 1..229 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:01 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5432677..5433801 230..1354 100 <- Minus
arm_2R 5434231..5434459 1..229 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:15 Download gff for RE61424.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9546371..9547495 230..1354 100 <- Minus
2R 9547925..9548153 1..229 99   Minus

RE61424.hyp Sequence

Translation from 0 to 1169

> RE61424.hyp
SAALSFVTKGCTPGCSRMNPCTSSPPQMPRGSGSVENCNLESDGLQLLEM
AGKEDYEELRDLLQSWDVADLLPHLQDEAINVDELQMIKRHHLSELLRNF
RFGTRIRFEHHLERWRRWLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQE
QSPLHMEQPSEQEELHKPEDLVKTIPAESLVALSDPREMSVPFPLPLVHP
PAQITDDIMMVKQELMPMQQTRKPEAVLAAGSSGGTSGNKEDATATPDQE
VSILGILRSSGMKAQSLLERIGQNDPLDAVQRLLLIQLVCSYYEENQMHL
TLQRSHLLEREILQLFPQEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQ
ELKRRRSELIRSIPTVQGHDASASVNFAGDQISSPDRSD*

RE61424.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PD 372 CG1888-PD 1..372 18..389 1927 100 Plus
CG1888-PC 372 CG1888-PC 1..372 18..389 1927 100 Plus
CG1888-PB 372 CG1888-PB 1..372 18..389 1927 100 Plus
CG1888-PA 372 CG1888-PA 1..372 18..389 1927 100 Plus

RE61424.pep Sequence

Translation from 51 to 1169

> RE61424.pep
MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD
VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR
WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK
PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP
MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL
LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP
QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ
GHDASASVNFAGDQISSPDRSD*

RE61424.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12499-PA 369 GF12499-PA 1..369 1..372 993 59.4 Plus
Dana\GF24064-PA 403 GF24064-PA 1..146 1..146 272 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25280-PA 373 GG25280-PA 1..373 1..372 1758 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21961-PA 317 GH21961-PA 12..317 38..372 812 51.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PD 372 CG1888-PD 1..372 1..372 1927 100 Plus
CG1888-PC 372 CG1888-PC 1..372 1..372 1927 100 Plus
CG1888-PB 372 CG1888-PB 1..372 1..372 1927 100 Plus
CG1888-PA 372 CG1888-PA 1..372 1..372 1927 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19668-PA 324 GI19668-PA 15..324 38..372 800 50.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17313-PA 347 GL17313-PA 26..347 31..372 976 58.4 Plus
Dper\GL19272-PA 308 GL19272-PA 1..292 33..339 609 46.5 Plus
Dper\GL26442-PA 326 GL26442-PA 168..279 209..324 170 35.3 Plus
Dper\GL21085-PA 339 GL21085-PA 181..292 209..324 168 34.5 Plus
Dper\GL21222-PA 375 GL21222-PA 217..328 209..324 168 34.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15109-PA 347 GA15109-PA 26..347 31..372 1005 59.3 Plus
Dpse\GA25896-PA 277 GA25896-PA 1..261 33..339 564 44.3 Plus
Dpse\GA29068-PA 336 GA29068-PA 164..281 207..324 172 33.9 Plus
Dpse\GA28972-PA 286 GA28972-PA 190..273 239..324 168 38.4 Plus
Dpse\GA25839-PA 71 GA25839-PA 1..58 281..339 142 50.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20598-PA 372 GM20598-PA 1..372 1..372 1868 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10071-PA 372 GD10071-PA 1..372 1..372 1811 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15032-PA 328 GJ15032-PA 19..328 33..372 798 51.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21493-PA 362 GK21493-PA 21..362 36..372 840 49.6 Plus