Clone RE61538 Report

Search the DGRC for RE61538

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:615
Well:38
Vector:pFlc-1
Associated Gene/TranscriptFmr1-RF
Protein status:RE61538.pep: gold
Sequenced Size:3758

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Fmr1 2008-04-29 Picked prior to 5.5
Fmr1 2008-08-15 Release 5.9 accounting
Fmr1 2008-12-18 5.12 accounting

Clone Sequence Records

RE61538.complete Sequence

3758 bp assembled on 2008-05-29

GenBank Submission: BT033066

> RE61538.complete
CTTGTCGTTGCAATTTATAAAGATAAGATCCGATTAAACCATCTTATATC
GCGGTTAAGTGATTTTCGCGGATAGATTACAGGGCCAGGTGACAGCTGTC
GCCGATGATGGCATCTTTGTGGATGTGGACGGCGTGCCCGAGAGTATGAA
ATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAAACCGTTGAGGTGG
CCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGTGTTCACGCGCACG
AACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTATTAAAATGCGCAA
AGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAGACGTCCTACACCG
AAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTCGAATCCGCCAATT
ACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGCCCGAGGAGTTGCG
CGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTTCAGCGCACAATCG
ATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGCCCTGATTGTCATC
TCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGCTCAAGGATATGCA
TTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAAAGGACTGAAGAAG
CTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCGTGGAAACTACGTT
GAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGGCGATTGGCTCGCA
TGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGCGTCACCAACATCG
AGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCGGAGAGACCGAGGAG
TCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCGAGGAGTTCTTCCA
GGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAAGAATGGGCGCATTA
TCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAATCAAGGTGAGTGCT
ATCGCTGGCGACGATGAACAGGATCAGAACATACCACGTGAGCTGGCGCA
TGTACCCTTTGTGTTCATTGGCACCGTGGAGAGCATTGCAAATGCCAAAG
TGCTGTTGGAGTATCATCTGTCGCACCTGAAGGAAGTAGAACAGTTGCGT
CAGGAGAAGATGGAGATTGATCAGCAGCTTCGCGCCATCCAGGAATCCTC
CATGGGCTCCACACAGAGCTTCCCAGTGACGCGGCGCTCTGAGCGCGGCT
ACAGCAGTGACATTGAGTCGGTGCGCTCTATGCGCGGCGGTGGTGGCGGC
CAGCGTGGTCGTGTACGCGGACGTGGTGGTGGCGGTCCTGGAGGTGGCAA
TGGCCTGAACCAGCGCTACCACAACAATCGCCGCGACGAGGATGACTACA
ACTCGCGGGGCGATCATCAGCGTGACCAGCAGCGTGGCTACAACGATCGC
GGCGGTGGTGACAACACTGGCAGCTATCGTGGAGGCGGTGGTGGCGCCGG
TGGTCCTGGCAACAACAGGCGCGGCGGAATCAACCGCCGGCCGCCACGCA
ACGATCAGCAGAATGGCAGGGACTATCAGCACCACAACCACACCACCGAA
GAGGTGCGGGAGACCCGTGAAATGAGCAGCGTGGAGAGAGCGGACAGTAA
CTCATCGTACGAAGGTAGCTCGCGGAGGCGCAGAAGGCAGAAGAACAACA
ATGGACCCAGTAACACAAACGGAGCTGTTGCCAATAACAACAACAAACCT
CAGTCGGCGCAGCAGCCACAACAGCAGCAGCCGCCGGCGCCTGGGAATAA
GGCGGCACTAAATGCCGGAGATGCCAGCAAACAGAACAGCGGCAATGCGA
ACGCCGCTGGCGGTGCGAGCAAGCCGAAGGATGCCTCACGCAACGGCGAC
AAGCAGCAGGCGGGCACACAGCAGCAACAGCCATCGCAGGTACAACAGCA
ACAGGCGGCACAGCAGCAGCAGCCGAAACCGCGACGCAACAAGAATCGCA
GCAACAACCACACGGACCAGCCATCCGGACAGCAGCAGCTGGCGGAGAAT
GTCAAAAAGGAGGGCCTGGTCAATGGCACGTCCTAAGCCGAGTGGCCAAA
GCGGTAGGAGGAGCAACAGCTCACAGATGGCTAGAACAACATGAACACGA
ATTGCACATCGTTCGACGGAGTAACAATGTTGTATGCGCAGCGGGGCAGT
TTAATAATCATGTTGATGTCCTTGAATGTAGCCGCCACATAACACAACAA
CCAACAACAACCACACAACACAACACAACTCAACAACAAACAAAACATCC
GATCAACATCAGACACTAGAACAACATCATCAGCCAACAACAAGCTCCAC
TAACCAATTGTTTGAGAAACTATAAGAGTAACTAAAAAAATAGGAATCGA
AAAATTATATACATGAAATATGTAACAAATGTGAAAGCATATACTAACAC
ACACACACACTCACACAAGGATACACTCACACACAACCACACACACAATA
CAGTTCGAATTATACACAAAAAGGAGGAAGTAATAAAAGAAAATTCATGC
CTAGGCTTATAATTTGAATTGAAACTAAAAAAGCTTCAATAACAATCAAA
ATGAATTATATTTATGTATAAAAGAAACTCAAAGGCAATTATTAACAAGC
AAAACGAACGAATCGAAAGTGAAACATTGAATATGTAAACTAAAACTTTA
ACTCTAATCCGGGCAACTAGGCGTAGTTTTTCGAAAAGAAAATCTAAAGA
AAACCTGACGAAATGGGCGCTTCAAAAGCGCCCCTTTGCGTCAACTTGAA
AAGTTTCTAGTTATATGCATATTATAATAAAACGAGAATGATATAATTGC
ATTTTTGTTTTGGTTAAATTAATTTTAGTTGTGTCTGTCATGTGTTTGTT
TTTGTGTATAATTCGTGCATGCAACAACTTAATCGCCTAGCAGGTTTTTC
TACATTATCATTATTTTTGTATTATTATATTTTAGTTTACTAATGTAAAT
GCCCAGGCGCGTTTAGAAGTTGCTTATAAATTTCGAAAGCCACGGCGGAC
AATTTCATTTGCAGGTGAATGTCTGCAAAGGACTTGTTCGTCGTGAGCTT
TTGCATCGTTTCATTGTTTCATTGTTTATTTTGTTCGTTACAACATGGAA
ATCCTCTCTTAATTGTATAATTTTGTATTTATTTACTATTATTAACACAT
CCCACACACCACACACGCCACACTCACCCGCATACACGAATATCAATTCT
CACACACACGAGCTCGCTCATACAAAACAGAAGGGAAACGCATTAATTTT
GATTTTGTTTTATAAATATATAATTTACTTCGCCAAACCTACAAAGCGTA
TACTAACTTAGTCCTCTATTAAATACTCTTAAATTATTTAAAACAAGTAA
AACGTGCCGAGTCGGGAGAGGAGCATTGAACACAATCATCGAGTGACGCG
AATCATTTCAATTGAATCATAATAGAAGACCCAACTATGGAATATAAATA
CACAATGTAAAGCCACCATAAAGAAACCATCTAAGAACAAATAGCAAGAA
GCAGAACAGAACAATTCTTTCCTCTTATTTGGAAGAACAGTGTCAATAAT
ATGTAAGAAAGGCAAACCACACATTTTAACATACATTAAAGAAGGAGATA
ACGATAATGGTACCGATTAAGATAAATCTAAATAATGTTGTGTAATTCAA
ATTAAAACAAATAAAACAAAAATCCAACTAAATGGAAACGGCAAAAAAAA
AAAAAAAA

RE61538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-RF 3850 Fmr1-RF 76..3827 1..3752 18685 99.8 Plus
Fmr1-RA 4544 Fmr1-RA 706..4377 81..3752 18285 99.8 Plus
Fmr1-RE 3985 Fmr1-RE 1067..3818 1001..3752 13685 99.8 Plus
Fmr1-RE 3985 Fmr1-RE 76..1066 1..991 4955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5927348..5929374 3742..1716 10090 99.9 Minus
chr3R 27901430 chr3R 5930061..5930570 1640..1131 2550 100 Minus
chr3R 27901430 chr3R 5931562..5931886 456..132 1625 100 Minus
chr3R 27901430 chr3R 5930832..5931142 1000..690 1555 100 Minus
chr3R 27901430 chr3R 5931329..5931496 624..457 840 100 Minus
chr3R 27901430 chr3R 5930650..5930782 1133..1001 665 100 Minus
chr3R 27901430 chr3R 5934001..5934083 83..1 415 100 Minus
chr3R 27901430 chr3R 5929445..5929521 1715..1639 385 100 Minus
chr3R 27901430 chr3R 5931206..5931277 690..619 360 100 Minus
chr3R 27901430 chr3R 5933202..5933255 132..79 270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10101566..10103602 3752..1716 10110 99.8 Minus
3R 32079331 3R 10104289..10104798 1640..1131 2550 100 Minus
3R 32079331 3R 10105790..10106114 456..132 1625 100 Minus
3R 32079331 3R 10105060..10105370 1000..690 1555 100 Minus
3R 32079331 3R 10105557..10105724 624..457 840 100 Minus
3R 32079331 3R 10104878..10105010 1133..1001 665 100 Minus
3R 32079331 3R 10108229..10108311 83..1 415 100 Minus
3R 32079331 3R 10103673..10103749 1715..1639 385 100 Minus
3R 32079331 3R 10105434..10105505 690..619 360 100 Minus
3R 32079331 3R 10107430..10107483 132..79 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9842397..9844433 3752..1716 10110 99.7 Minus
3R 31820162 3R 9845120..9845629 1640..1131 2550 100 Minus
3R 31820162 3R 9846621..9846945 456..132 1625 100 Minus
3R 31820162 3R 9845891..9846201 1000..690 1555 100 Minus
3R 31820162 3R 9846388..9846555 624..457 840 100 Minus
3R 31820162 3R 9845709..9845841 1133..1001 665 100 Minus
3R 31820162 3R 9849060..9849142 83..1 415 100 Minus
3R 31820162 3R 9844504..9844580 1715..1639 385 100 Minus
3R 31820162 3R 9846265..9846336 690..619 360 100 Minus
3R 31820162 3R 9848261..9848314 132..79 270 100 Minus
Blast to na_te.dros performed 2019-03-16 11:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6878 1840..2039 256 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6856 1902..2041 232 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2619..2914 1741..2034 222 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7010 1732..2020 218 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2443 1895..2040 216 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7035 1681..1968 215 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6929 1828..2045 210 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2950 1803..2147 177 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..7070 1694..2051 176 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6941 1825..1997 174 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2418 1913..2039 173 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2642 1708..2041 172 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2527 1728..1953 171 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2856 1759..2341 164 55.1 Plus
roo 9092 roo DM_ROO 9092bp 8483..8634 3002..2848 145 60.1 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1005..1116 2907..2797 143 59.8 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 1127..1273 2991..2852 142 59.5 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1038..1211 2824..2997 140 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2268..2653 1620..2012 139 51.9 Plus
accord2 7650 accord2 QBERT 7650bp 6191..6317 2678..2556 138 59.8 Minus
Juan 4236 Juan JUAN 4236bp 2262..2440 3335..3510 131 58.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1099..1146 2954..3000 129 77.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1588 1707..1782 126 68.4 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4490..4624 1720..1855 119 55.1 Plus
roo 9092 roo DM_ROO 9092bp 1101..1145 1746..1790 117 73.3 Plus

RE61538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:04:48 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5931562..5931885 133..456 100 <- Minus
chr3R 5933202..5933251 83..132 100 <- Minus
chr3R 5931331..5931496 457..622 100 <- Minus
chr3R 5934002..5934083 1..82 100   Minus
chr3R 5927348..5928592 2498..3742 96 == Minus
chr3R 5928644..5929081 2009..2446 88 == Minus
chr3R 5929172..5929374 1716..1918 100 <- Minus
chr3R 5929445..5929519 1641..1715 100 <- Minus
chr3R 5930061..5930568 1133..1640 100 <- Minus
chr3R 5930651..5930782 1001..1132 100 <- Minus
chr3R 5930832..5931141 691..1000 100 <- Minus
chr3R 5931206..5931273 623..690 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:36 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 46..2055 78..2086 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:02:10 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 46..2055 78..2086 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:19:11 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 46..2055 78..2086 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:16 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 46..2055 78..2086 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:42 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 46..2055 78..2086 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:20:50 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 614..4279 78..3742 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:02:10 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RF 1..3742 1..3742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:11 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RF 32..3773 1..3742 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:16 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 614..4279 78..3742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:42 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RF 32..3773 1..3742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:48 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10101576..10103602 1716..3742 99 <- Minus
3R 10103673..10103747 1641..1715 100 <- Minus
3R 10104289..10104796 1133..1640 100 <- Minus
3R 10104879..10105010 1001..1132 100 <- Minus
3R 10105060..10105369 691..1000 100 <- Minus
3R 10105434..10105501 623..690 100 <- Minus
3R 10105559..10105724 457..622 100 <- Minus
3R 10105790..10106113 133..456 100 <- Minus
3R 10107430..10107479 83..132 100 <- Minus
3R 10108230..10108311 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:48 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10101576..10103602 1716..3742 99 <- Minus
3R 10103673..10103747 1641..1715 100 <- Minus
3R 10104289..10104796 1133..1640 100 <- Minus
3R 10104879..10105010 1001..1132 100 <- Minus
3R 10105060..10105369 691..1000 100 <- Minus
3R 10105434..10105501 623..690 100 <- Minus
3R 10105559..10105724 457..622 100 <- Minus
3R 10105790..10106113 133..456 100 <- Minus
3R 10107430..10107479 83..132 100 <- Minus
3R 10108230..10108311 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:48 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10101576..10103602 1716..3742 99 <- Minus
3R 10103673..10103747 1641..1715 100 <- Minus
3R 10104289..10104796 1133..1640 100 <- Minus
3R 10104879..10105010 1001..1132 100 <- Minus
3R 10105060..10105369 691..1000 100 <- Minus
3R 10105434..10105501 623..690 100 <- Minus
3R 10105559..10105724 457..622 100 <- Minus
3R 10105790..10106113 133..456 100 <- Minus
3R 10107430..10107479 83..132 100 <- Minus
3R 10108230..10108311 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:11 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5927298..5929324 1716..3742 99 <- Minus
arm_3R 5929395..5929469 1641..1715 100 <- Minus
arm_3R 5930011..5930518 1133..1640 100 <- Minus
arm_3R 5930601..5930732 1001..1132 100 <- Minus
arm_3R 5930782..5931091 691..1000 100 <- Minus
arm_3R 5931156..5931223 623..690 100 <- Minus
arm_3R 5931281..5931446 457..622 100 <- Minus
arm_3R 5931512..5931835 133..456 100 <- Minus
arm_3R 5933152..5933201 83..132 100 <- Minus
arm_3R 5933952..5934033 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:29:50 Download gff for RE61538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9844504..9844578 1641..1715 100 <- Minus
3R 9845710..9845841 1001..1132 100 <- Minus
3R 9842407..9844433 1716..3742 99 <- Minus
3R 9845120..9845627 1133..1640 100 <- Minus
3R 9845891..9846200 691..1000 100 <- Minus
3R 9846265..9846332 623..690 100 <- Minus
3R 9846390..9846555 457..622 100 <- Minus
3R 9846621..9846944 133..456 100 <- Minus
3R 9848261..9848310 83..132 100 <- Minus
3R 9849061..9849142 1..82 100   Minus

RE61538.pep Sequence

Translation from 145 to 2085

> RE61538.pep
MKYPFVNVRLPPEETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKM
RKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEE
LREEAQKDGIHKEFQRTIDAGVCNYSRDLDALIVISKFEHTQKRASMLKD
MHFRNLSQKVMLLKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIG
SHGSNIQAARTVDGVTNIELEEKSCTFKISGETEESVQRARAMLEYAEEF
FQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKVSAIAGDDEQDQNIPREL
AHVPFVFIGTVESIANAKVLLEYHLSHLKEVEQLRQEKMEIDQQLRAIQE
SSMGSTQSFPVTRRSERGYSSDIESVRSMRGGGGGQRGRVRGRGGGGPGG
GNGLNQRYHNNRRDEDDYNSRGDHQRDQQRGYNDRGGGDNTGSYRGGGGG
AGGPGNNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETREMSSVERAD
SNSSYEGSSRRRRRQKNNNGPSNTNGAVANNNNKPQSAQQPQQQQPPAPG
NKAALNAGDASKQNSGNANAAGGASKPKDASRNGDKQQAGTQQQQPSQVQ
QQQAAQQQQPKPRRNKNRSNNHTDQPSGQQQLAENVKKEGLVNGTS*

RE61538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17134-PA 858 GF17134-PA 193..858 1..646 2490 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17303-PA 677 GG17303-PA 39..677 1..646 2663 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14068-PA 722 GH14068-PA 39..641 1..587 2181 76.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-PF 646 CG6203-PF 1..646 1..646 3360 100 Plus
Fmr1-PA 684 CG6203-PA 39..684 1..646 3360 100 Plus
Fmr1-PG 729 CG6203-PG 87..729 1..646 3334 99.5 Plus
Fmr1-PK 681 CG6203-PK 39..681 1..646 3334 99.5 Plus
Fmr1-PJ 681 CG6203-PJ 39..681 1..646 3334 99.5 Plus
Fmr1-PC 681 CG6203-PC 39..681 1..646 3334 99.5 Plus
Fmr1-PE 643 CG6203-PE 1..643 1..646 3334 99.5 Plus
Fmr1-PD 681 CG6203-PD 39..681 1..646 3334 99.5 Plus
Fmr1-PI 639 CG6203-PI 1..639 1..646 3306 98.9 Plus
Fmr1-PH 577 CG6203-PH 87..577 1..502 2525 97.6 Plus
Fmr1-PB 529 CG6203-PB 39..529 1..502 2525 97.6 Plus
f-PD 1436 CG5424-PD 220..592 322..642 179 22.6 Plus
f-PB 1436 CG5424-PB 220..592 322..642 179 22.6 Plus
f-PC 1509 CG5424-PC 293..665 322..642 179 22.6 Plus
f-PI 1544 CG42864-PI 328..700 322..642 179 22.6 Plus
f-PJ 1761 CG42864-PJ 549..921 322..642 179 22.6 Plus
f-PH 1790 CG42864-PH 574..946 322..642 179 22.6 Plus
f-PF 1918 CG5424-PF 706..1078 322..642 179 22.6 Plus
Smr-PF 3601 CG4013-PF 318..665 313..628 163 22.7 Plus
Smr-PE 3601 CG4013-PE 318..665 313..628 163 22.7 Plus
Smr-PD 3601 CG4013-PD 318..665 313..628 163 22.7 Plus
Smr-PG 3607 CG4013-PG 324..671 313..628 163 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24444-PA 699 GI24444-PA 39..699 1..646 2281 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27278-PA 679 GL27278-PA 40..679 2..646 2405 79.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19437-PA 699 GA19437-PA 40..699 2..646 2521 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26187-PA 682 GM26187-PA 39..682 1..646 3331 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20735-PA 682 GD20735-PA 39..682 1..646 3336 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10720-PA 683 GJ10720-PA 39..683 1..646 2274 76.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12202-PA 715 GK12202-PA 39..715 1..646 2184 76.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24705-PA 688 GE24705-PA 39..688 1..646 3294 96.2 Plus

RE61538.hyp Sequence

Translation from 145 to 2085

> RE61538.hyp
MKYPFVNVRLPPEETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKM
RKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEE
LREEAQKDGIHKEFQRTIDAGVCNYSRDLDALIVISKFEHTQKRASMLKD
MHFRNLSQKVMLLKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIG
SHGSNIQAARTVDGVTNIELEEKSCTFKISGETEESVQRARAMLEYAEEF
FQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKVSAIAGDDEQDQNIPREL
AHVPFVFIGTVESIANAKVLLEYHLSHLKEVEQLRQEKMEIDQQLRAIQE
SSMGSTQSFPVTRRSERGYSSDIESVRSMRGGGGGQRGRVRGRGGGGPGG
GNGLNQRYHNNRRDEDDYNSRGDHQRDQQRGYNDRGGGDNTGSYRGGGGG
AGGPGNNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETREMSSVERAD
SNSSYEGSSRRRRRQKNNNGPSNTNGAVANNNNKPQSAQQPQQQQPPAPG
NKAALNAGDASKQNSGNANAAGGASKPKDASRNGDKQQAGTQQQQPSQVQ
QQQAAQQQQPKPRRNKNRSNNHTDQPSGQQQLAENVKKEGLVNGTS*

RE61538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-PF 646 CG6203-PF 1..646 1..646 3360 100 Plus
Fmr1-PA 684 CG6203-PA 39..684 1..646 3360 100 Plus
Fmr1-PG 729 CG6203-PG 87..729 1..646 3334 99.5 Plus
Fmr1-PK 681 CG6203-PK 39..681 1..646 3334 99.5 Plus
Fmr1-PJ 681 CG6203-PJ 39..681 1..646 3334 99.5 Plus