BDGP Sequence Production Resources |
Search the DGRC for RE61595
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 615 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1463-RA |
Protein status: | RE61595.pep: gold |
Preliminary Size: | 1105 |
Sequenced Size: | 1918 |
Gene | Date | Evidence |
---|---|---|
CG1463 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1463 | 2002-03-28 | Blastp of sequenced clone |
CG1463 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1463 | 2008-04-29 | Release 5.5 accounting |
CG1463 | 2008-08-15 | Release 5.9 accounting |
CG1463 | 2008-12-18 | 5.12 accounting |
1918 bp (1918 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094891
> RE61595.complete AATACAGACGACGATGGCCGATGAGACCAGCACTAAGACCAGAACTATGC GCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCATGT CCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCATAA GAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTACCGC TGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTGGAG GAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCGATT TACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGATGG CAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTCAGT CGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATTCCA TTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCCTTC CCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTCACG CTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGCACG GGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTCAGC TGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGGTGT TATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAAAAC CATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCACCAG GAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCACGAA GAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGCGGA GGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCATTTG CTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCACTC TACAGACAAAGTGTTGTACTGTAGAAACCAAGAACTATAGTACTATTGCC TGCCCAGAATTGGTCACCAGCAAAACACGGTCCCGTGTAATTAAAACAAT TAGCTTTTATATTTTTACATAAGTTCTGTATTTTCTCATACGCATTTGAT TTGATTTTTATTTTAGGCTTATTAAACATTAATAATTCATACCACACTTC GTTTCGATCTAGTTCCATTATTATCAACATCATCATATTACCAATCAATC ATGATCATCATAATATAAGTATATATAAAGAAGTTGGAAAAATCAAGTTA CAGAGCCTTGGGATTAATCGTAATTTGTGTACACATTTTGAGTACAGAGT TTTGTGGTCAATGCACAGCAGTTTGTCCCTATTTGAAGGATCTGTAGTTT AATTTTGATATACCAATTAGCATTTCGATTTGTACAGAATACATATGTGT GCCAGTATATACCTATATAAATTTATTATATTACTTTCATTCTTCCTATT CTTTGCTTTATATTTTTTTTTTGCCTGCACCAGTTATTTTTTTTTTTTGT TTACTATTTAAATTTAAAATTAAAGCATAAACAAACAAGTTCTAACAAAT AAACATTTTCAAAATGCATTTTCAATTCAAACGAATAGTAAAAAAAAAAA CAGAATAAACCATTTTAATTGTTCTAAAGATACATTCATATATATATATA ATTGGAATCATTTGCATATTTCACACCAATTGTAAAAAAGAAACACAGAG GAGAATACATTGATAAGAGAAACCAGGGAGAACAATTCATTTGCTTCTTA AACGCTTAAATCAATCGAATATCAGCTTTCGTAGTTATATAGACAGATAG ATCAGTTATATAGTATTTAGATGTGGAAAATACAGCAATGCATATTCAAA GTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 12500472..12501549 | 1902..825 | 5160 | 99.2 | Minus |
chrX | 22417052 | chrX | 12501602..12502388 | 826..40 | 3815 | 99 | Minus |
chrX | 22417052 | chrX | 12502438..12502479 | 42..1 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1324..1537 | 1550..1761 | 169 | 57.2 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6235..6411 | 1559..1747 | 123 | 58.1 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 2746..2811 | 1667..1602 | 114 | 63.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 12500472..12501549 | 825..1902 | 95 | <- | Minus |
chrX | 12501604..12502385 | 43..824 | 98 | <- | Minus |
chrX | 12502438..12502479 | 1..42 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 1..1011 | 14..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 1..1011 | 14..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 1..1011 | 14..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 1..1011 | 14..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 1..1011 | 14..1024 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 36..1937 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 36..1937 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 45..1526 | 1..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 36..1937 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1463-RA | 45..1526 | 1..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12610689..12611470 | 43..824 | 100 | <- | Minus |
X | 12611523..12611564 | 1..42 | 100 | Minus | |
X | 12609557..12610634 | 825..1902 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12610689..12611470 | 43..824 | 100 | <- | Minus |
X | 12611523..12611564 | 1..42 | 100 | Minus | |
X | 12609557..12610634 | 825..1902 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12610689..12611470 | 43..824 | 100 | <- | Minus |
X | 12611523..12611564 | 1..42 | 100 | Minus | |
X | 12609557..12610634 | 825..1902 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 12505556..12505597 | 1..42 | 100 | Minus | |
arm_X | 12503590..12504667 | 825..1902 | 99 | <- | Minus |
arm_X | 12504722..12505503 | 43..824 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12617655..12618732 | 825..1902 | 99 | <- | Minus |
X | 12618787..12619568 | 43..824 | 100 | <- | Minus |
X | 12619621..12619662 | 1..42 | 100 | Minus |
Translation from 0 to 1023
> RE61595.hyp IQTTMADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHK KELNCDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRF THDQRNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFH WRIEWLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAR EQRKLLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKT IVEFPTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAE DLDDSHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1463-PB | 336 | CG1463-PB | 1..336 | 5..340 | 1791 | 100 | Plus |
CG1463-PC | 336 | CG1463-PC | 1..336 | 5..340 | 1791 | 100 | Plus |
CG1463-PA | 336 | CG1463-PA | 1..336 | 5..340 | 1791 | 100 | Plus |
Translation from 13 to 1023
> RE61595.pep MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20899-PA | 320 | GF20899-PA | 1..255 | 12..268 | 961 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19545-PA | 342 | GG19545-PA | 1..333 | 1..334 | 1497 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24828-PA | 330 | GH24828-PA | 3..312 | 4..316 | 905 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1463-PB | 336 | CG1463-PB | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PC | 336 | CG1463-PC | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PA | 336 | CG1463-PA | 1..336 | 1..336 | 1791 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16160-PA | 353 | GI16160-PA | 15..267 | 13..270 | 895 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13154-PA | 276 | GL13154-PA | 1..276 | 71..336 | 623 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13128-PA | 347 | GA13128-PA | 4..347 | 3..336 | 998 | 58.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11541-PA | 336 | GM11541-PA | 1..336 | 1..336 | 1608 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24529-PA | 336 | GD24529-PA | 1..336 | 1..336 | 1614 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16653-PA | 343 | GJ16653-PA | 21..328 | 13..316 | 907 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25431-PA | 345 | GK25431-PA | 17..284 | 7..275 | 986 | 66.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16207-PA | 335 | GE16207-PA | 1..335 | 1..336 | 1525 | 85.4 | Plus |