Clone RE61595 Report

Search the DGRC for RE61595

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:615
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG1463-RA
Protein status:RE61595.pep: gold
Preliminary Size:1105
Sequenced Size:1918

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1463 2002-01-01 Sim4 clustering to Release 2
CG1463 2002-03-28 Blastp of sequenced clone
CG1463 2003-01-01 Sim4 clustering to Release 3
CG1463 2008-04-29 Release 5.5 accounting
CG1463 2008-08-15 Release 5.9 accounting
CG1463 2008-12-18 5.12 accounting

Clone Sequence Records

RE61595.complete Sequence

1918 bp (1918 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094891

> RE61595.complete
AATACAGACGACGATGGCCGATGAGACCAGCACTAAGACCAGAACTATGC
GCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCATGT
CCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCATAA
GAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTACCGC
TGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTGGAG
GAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCGATT
TACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGATGG
CAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTCAGT
CGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATTCCA
TTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCCTTC
CCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTCACG
CTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGCACG
GGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTCAGC
TGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGGTGT
TATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAAAAC
CATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCACCAG
GAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCACGAA
GAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGCGGA
GGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCATTTG
CTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCACTC
TACAGACAAAGTGTTGTACTGTAGAAACCAAGAACTATAGTACTATTGCC
TGCCCAGAATTGGTCACCAGCAAAACACGGTCCCGTGTAATTAAAACAAT
TAGCTTTTATATTTTTACATAAGTTCTGTATTTTCTCATACGCATTTGAT
TTGATTTTTATTTTAGGCTTATTAAACATTAATAATTCATACCACACTTC
GTTTCGATCTAGTTCCATTATTATCAACATCATCATATTACCAATCAATC
ATGATCATCATAATATAAGTATATATAAAGAAGTTGGAAAAATCAAGTTA
CAGAGCCTTGGGATTAATCGTAATTTGTGTACACATTTTGAGTACAGAGT
TTTGTGGTCAATGCACAGCAGTTTGTCCCTATTTGAAGGATCTGTAGTTT
AATTTTGATATACCAATTAGCATTTCGATTTGTACAGAATACATATGTGT
GCCAGTATATACCTATATAAATTTATTATATTACTTTCATTCTTCCTATT
CTTTGCTTTATATTTTTTTTTTGCCTGCACCAGTTATTTTTTTTTTTTGT
TTACTATTTAAATTTAAAATTAAAGCATAAACAAACAAGTTCTAACAAAT
AAACATTTTCAAAATGCATTTTCAATTCAAACGAATAGTAAAAAAAAAAA
CAGAATAAACCATTTTAATTGTTCTAAAGATACATTCATATATATATATA
ATTGGAATCATTTGCATATTTCACACCAATTGTAAAAAAGAAACACAGAG
GAGAATACATTGATAAGAGAAACCAGGGAGAACAATTCATTTGCTTCTTA
AACGCTTAAATCAATCGAATATCAGCTTTCGTAGTTATATAGACAGATAG
ATCAGTTATATAGTATTTAGATGTGGAAAATACAGCAATGCATATTCAAA
GTAAAAAAAAAAAAAAAA

RE61595.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RA 2119 CG1463-RA 203..2104 1..1902 9495 99.9 Plus
Sec16-RE 7370 Sec16-RE 7017..7370 1902..1549 1755 99.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12500472..12501549 1902..825 5160 99.2 Minus
chrX 22417052 chrX 12501602..12502388 826..40 3815 99 Minus
chrX 22417052 chrX 12502438..12502479 42..1 210 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12609557..12610634 1902..825 5375 99.9 Minus
X 23542271 X 12610687..12611473 826..40 3935 100 Minus
X 23542271 X 12611523..12611564 42..1 210 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12617655..12618732 1902..825 5375 99.9 Minus
X 23527363 X 12618785..12619571 826..40 3935 100 Minus
X 23527363 X 12619621..12619662 42..1 210 100 Minus
Blast to na_te.dros performed 2019-03-15 20:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1324..1537 1550..1761 169 57.2 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6235..6411 1559..1747 123 58.1 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 2746..2811 1667..1602 114 63.6 Minus

RE61595.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:07:16 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12500472..12501549 825..1902 95 <- Minus
chrX 12501604..12502385 43..824 98 <- Minus
chrX 12502438..12502479 1..42 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:39 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 14..1024 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:14 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 14..1024 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:45 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 14..1024 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:39 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 14..1024 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:34 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 14..1024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:08 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 36..1937 1..1902 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:14 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 36..1937 1..1902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:45 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 45..1526 1..1482 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:39 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 36..1937 1..1902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:34 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 45..1526 1..1482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:16 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
X 12610689..12611470 43..824 100 <- Minus
X 12611523..12611564 1..42 100   Minus
X 12609557..12610634 825..1902 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:16 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
X 12610689..12611470 43..824 100 <- Minus
X 12611523..12611564 1..42 100   Minus
X 12609557..12610634 825..1902 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:16 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
X 12610689..12611470 43..824 100 <- Minus
X 12611523..12611564 1..42 100   Minus
X 12609557..12610634 825..1902 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:45 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12505556..12505597 1..42 100   Minus
arm_X 12503590..12504667 825..1902 99 <- Minus
arm_X 12504722..12505503 43..824 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:31 Download gff for RE61595.complete
Subject Subject Range Query Range Percent Splice Strand
X 12617655..12618732 825..1902 99 <- Minus
X 12618787..12619568 43..824 100 <- Minus
X 12619621..12619662 1..42 100   Minus

RE61595.hyp Sequence

Translation from 0 to 1023

> RE61595.hyp
IQTTMADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHK
KELNCDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRF
THDQRNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFH
WRIEWLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAR
EQRKLLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKT
IVEFPTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAE
DLDDSHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*

RE61595.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PB 336 CG1463-PB 1..336 5..340 1791 100 Plus
CG1463-PC 336 CG1463-PC 1..336 5..340 1791 100 Plus
CG1463-PA 336 CG1463-PA 1..336 5..340 1791 100 Plus

RE61595.pep Sequence

Translation from 13 to 1023

> RE61595.pep
MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN
CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ
RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE
WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK
LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF
PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD
SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*

RE61595.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20899-PA 320 GF20899-PA 1..255 12..268 961 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19545-PA 342 GG19545-PA 1..333 1..334 1497 84.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24828-PA 330 GH24828-PA 3..312 4..316 905 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PB 336 CG1463-PB 1..336 1..336 1791 100 Plus
CG1463-PC 336 CG1463-PC 1..336 1..336 1791 100 Plus
CG1463-PA 336 CG1463-PA 1..336 1..336 1791 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16160-PA 353 GI16160-PA 15..267 13..270 895 63.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13154-PA 276 GL13154-PA 1..276 71..336 623 50.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13128-PA 347 GA13128-PA 4..347 3..336 998 58.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11541-PA 336 GM11541-PA 1..336 1..336 1608 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24529-PA 336 GD24529-PA 1..336 1..336 1614 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16653-PA 343 GJ16653-PA 21..328 13..316 907 58 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25431-PA 345 GK25431-PA 17..284 7..275 986 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16207-PA 335 GE16207-PA 1..335 1..336 1525 85.4 Plus