Clone RE61650 Report

Search the DGRC for RE61650

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:616
Well:50
Vector:pFlc-1
Associated Gene/TranscriptisoQC-RB
Protein status:RE61650.pep: gold
Sequenced Size:1633

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5976 2002-11-17 Blastp of sequenced clone
CG5976 2008-04-29 Release 5.5 accounting
CG5976 2008-08-15 Release 5.9 accounting
CG5976 2008-12-18 5.12 accounting

Clone Sequence Records

RE61650.complete Sequence

1633 bp (1633 high quality bases) assembled on 2002-11-17

GenBank Submission: BT003189

> RE61650.complete
GGTGTGTTGTGTAGTGTTCTGTGTGCATAATTTGTATTAAAAATATACAT
GCATAAGTGAAATGCGTCTGCTACTCAGAAATTATTCCCTAATGGAGGCC
GTCAAAAGATTGCTGCCGAGACCGCGCAAAAAAATCTACAATCTAGGCGC
TTGCTTCGAACTGGTGGATATTCCTAAGATATCCTACAATCCCAGCGAGC
TCTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACAC
CTAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAAC
AAATCATAGCATCGTTCGAGAATACATCGTCCAGAGTTTGAGGGATCTAG
ACTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGC
AAATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAG
ATATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGG
AATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAAC
CTGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACT
GAGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGG
GACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCAC
CATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTT
GGGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCT
GGTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTC
CTGGAGCGCTATGCCAGTAGTGGAGTTGCCCAGCGCGACCCCACCCGCTA
CTTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATAC
CCTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTT
CCCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGC
GACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATC
TGCTGGCCGGAACCGAGGCCAAGTAGTCAAGTGGGCTTCCGTGTGAATCA
CAAATGACAAATGTTGTATCTACTTCAGGCCTTATCTAATTGACCTGTTC
CAGTATCGGAGCATTGTTGGAAGTTCTTATGCCCGCCGGAAGATCCCTAG
AAAACCTTGTTGTAACCGACTGCGTGCTTTAAAACTAATAAGGGAAGATC
TGCAACACGCGTACTCCAAATATTTTTATACACATGTATTTATAGAAAAT
GCTTAGCTAATGACACGTCAGGTTTATATATTTTTTGTAATCTTTCGGTT
GTAAATTGTTTTCACTTATGTAAGTTAACTAAGTTAACCGGACTGATTGT
CCGCACACCAGCACCGGTCAAATTGCTGACCAAGCATTTGGCCGGAAGCT
CATGCATAGCCGGCAGAAGCTCTGCGCATTGGCAGAGGCCGCTATGATGT
TTTTCCCTTTGTTAGCTTATAGTCAGTTTGATTTTGTATTCAATAAAGAG
CGCATCGCGCCTTCAATCAAAAAAAAAAAAAAA

RE61650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976-RB 1617 CG5976-RB 3..1617 3..1618 8010 99.8 Plus
CG5976.e 4752 CG5976.e 636..2078 177..1620 7150 99.7 Plus
CG5976.a 3596 CG5976.a 636..2078 177..1620 7150 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20464575..20466015 177..1618 7115 99.7 Plus
chrU 10048995 chrU 9264548..9264747 1618..1419 985 99.5 Minus
chr3L 24539361 chr3L 20472958..20473153 1423..1618 980 100 Plus
chrX 22417052 chrX 10240343..10240544 1417..1618 980 99 Plus
chr2L 23010047 chr2L 3251125..3251322 1421..1618 975 99.5 Plus
chrX 22417052 chrX 4996377..4996573 1618..1422 970 99.5 Minus
chrX 22417052 chrX 4989273..4989468 1618..1423 965 99.5 Minus
chrX 22417052 chrX 10247453..10247648 1423..1618 965 99.5 Plus
chr2L 23010047 chr2L 3258231..3258426 1423..1618 965 99.5 Plus
chr3R 27901430 chr3R 26904026..26904227 1618..1417 965 98.5 Minus
chr3R 27901430 chr3R 26896889..26897084 1618..1423 950 99 Minus
chr3L 24539361 chr3L 20463480..20463655 3..178 880 100 Plus
chrX 22417052 chrX 21596595..21596760 1578..1413 785 98.2 Minus
chr2RHet 3288813 chr2RHet 2930126..2930285 1419..1578 785 99.4 Plus
chrU 10048995 chrU 1040809..1040965 1422..1578 770 99.4 Plus
chrU 10048995 chrU 8814465..8814621 1578..1422 770 99.4 Minus
chrU 10048995 chrU 8644616..8644771 1578..1423 765 99.4 Minus
chrX 22417052 chrX 21589370..21589525 1578..1423 765 99.4 Minus
chr3R 27901430 chr3R 3521765..3521925 1418..1578 760 98.1 Plus
chr3R 27901430 chr3R 3528995..3529150 1423..1578 750 98.7 Plus
chrU 10048995 chrU 1006639..1006785 1421..1568 510 91.2 Plus
chrU 10048995 chrU 4331344..4331490 1568..1421 510 91.2 Minus
chrX 22417052 chrX 21614162..21614356 1618..1423 510 85.2 Minus
chrX 22417052 chrX 21664611..21664757 1568..1421 510 91.2 Minus
chrU 10048995 chrU 9715967..9716161 1618..1423 495 84.7 Minus
chrX 22417052 chrX 21572592..21572786 1618..1423 495 84.7 Minus
chrXHet 204175 chrXHet 180716..180853 1417..1554 480 89.9 Plus
chrU 10048995 chrU 5677054..5677184 1416..1547 475 92.4 Plus
chr2RHet 3288813 chr2RHet 947395..947540 1568..1422 475 89.8 Minus
chr2RHet 3288813 chr2RHet 939412..939556 1568..1423 470 89.7 Minus
chr3LHet 2555433 chr3LHet 7781..7914 1423..1554 455 91 Plus
chr2R 21145070 chr2R 907637..907769 1547..1416 450 91 Minus
chr2R 21145070 chr2R 1505210..1505335 1547..1421 450 92.1 Minus
chr3LHet 2555433 chr3LHet 583750..583890 1554..1416 445 89.4 Minus
chrU 10048995 chrU 2986490..2986613 1423..1547 440 92 Plus
chr3LHet 2555433 chr3LHet 5200..5333 1423..1554 440 90.3 Plus
chr2LHet 368865 chr2LHet 311243..311366 1547..1423 440 92 Minus
chr3L 24539361 chr3L 23831339..23831472 1421..1554 430 88.1 Plus
chrU 10048995 chrU 122608..122747 1554..1415 430 87.1 Minus
chrU 10048995 chrU 1945410..1945531 1423..1545 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1483149..1483270 1423..1545 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1490151..1490272 1423..1545 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1496375..1496496 1423..1545 430 91.9 Plus
chr2LHet 368865 chr2LHet 317732..317853 1543..1421 430 91.9 Minus
chr3LHet 2555433 chr3LHet 11734..11867 1423..1554 425 89.6 Plus
chrU 10048995 chrU 9092986..9093113 1420..1547 415 88.3 Plus
chrU 10048995 chrU 1029067..1029166 1522..1423 410 94 Minus
chr3L 24539361 chr3L 23183199..23183327 1417..1545 390 86.8 Plus
chr3L 24539361 chr3L 23535370..23535498 1417..1545 390 86.8 Plus
chrU 10048995 chrU 5918568..5918658 1513..1423 380 94.5 Minus
chrX 22417052 chrX 21630100..21630220 1554..1434 380 87.6 Minus
chr2R 21145070 chr2R 1477497..1477587 1423..1513 380 94.5 Plus
chr2RHet 3288813 chr2RHet 1476936..1477046 1434..1545 375 91.1 Plus
chr3LHet 2555433 chr3LHet 888426..888515 1549..1460 375 94.4 Minus
chr2R 21145070 chr2R 1484056..1484146 1423..1513 365 93.4 Plus
chrU 10048995 chrU 2888756..2888844 1459..1547 340 92.1 Plus
chr2R 21145070 chr2R 776526..776656 1554..1424 340 84 Minus
chr2L 23010047 chr2L 21576507..21576586 1500..1421 325 93.8 Minus
chr3LHet 2555433 chr3LHet 26095..26222 1547..1417 260 81.7 Minus
chr3LHet 2555433 chr3LHet 2500931..2501105 1618..1441 245 81 Minus
chr2R 21145070 chr2R 1470956..1471040 1483..1568 245 88.4 Plus
chr3L 24539361 chr3L 23834719..23834787 1486..1554 240 89.9 Plus
chr2L 23010047 chr2L 22680789..22680862 1554..1481 235 87.8 Minus
chr3LHet 2555433 chr3LHet 2493684..2493835 1618..1464 235 82.7 Minus
chrU 10048995 chrU 6182656..6182722 1423..1489 230 89.6 Plus
chrU 10048995 chrU 3119113..3119287 1618..1441 230 80.4 Minus
chr2R 21145070 chr2R 1204686..1204748 1485..1423 225 90.5 Minus
chr3LHet 2555433 chr3LHet 1237736..1237910 1441..1618 215 79.9 Plus
chrU 10048995 chrU 1061604..1061778 1618..1441 205 77 Minus
chrU 10048995 chrU 5776080..5776231 1464..1618 205 81.4 Plus
chr2RHet 3288813 chr2RHet 958774..958838 1421..1485 205 87.7 Plus
chr2RHet 3288813 chr2RHet 1007742..1007806 1485..1421 205 87.7 Minus
chr2RHet 3288813 chr2RHet 1084845..1084897 1475..1423 205 92.5 Minus
chr2R 21145070 chr2R 1470912..1470959 1416..1463 195 93.8 Plus
chr3LHet 2555433 chr3LHet 2474286..2474365 1422..1501 190 82.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475563..20477005 177..1620 7140 99.8 Plus
3L 28110227 3L 27224886..27225087 1419..1620 995 99.5 Plus
3L 28110227 3L 20483946..20484143 1423..1620 990 100 Plus
X 23542271 X 10348848..10349051 1417..1620 990 99 Plus
2L 23513712 2L 3251547..3251746 1421..1620 985 99.5 Plus
X 23542271 X 5103640..5103838 1620..1422 980 99.5 Minus
3L 28110227 3L 27232029..27232226 1423..1620 975 99.5 Plus
X 23542271 X 5096536..5096733 1620..1423 975 99.5 Minus
X 23542271 X 10355958..10356155 1423..1620 975 99.5 Plus
2L 23513712 2L 3258653..3258850 1423..1620 975 99.5 Plus
3R 32079331 3R 31081629..31081832 1620..1417 975 98.5 Minus
3R 32079331 3R 31074492..31074689 1620..1423 960 99 Minus
3L 28110227 3L 20474468..20474643 3..178 880 100 Plus
3L 28110227 3L 27520719..27520878 1578..1419 785 99.4 Minus
3L 28110227 3L 27829808..27829967 1578..1419 785 99.4 Minus
X 23542271 X 21731437..21731602 1578..1413 785 98.2 Minus
X 23542271 X 21908124..21908280 1578..1422 770 99.4 Minus
3L 28110227 3L 27813523..27813678 1578..1423 765 99.4 Minus
X 23542271 X 21724212..21724367 1578..1423 765 99.4 Minus
3CEN 744266 3CEN 284869..285024 1578..1423 765 99.4 Minus
3R 32079331 3R 7695705..7695865 1418..1578 760 98.1 Plus
3R 32079331 3R 7702935..7703090 1423..1578 750 98.7 Plus
X 23542271 X 21749004..21749198 1618..1423 510 85.2 Minus
X 23542271 X 21799453..21799599 1568..1421 510 91.2 Minus
X 23542271 X 21869840..21869986 1568..1421 510 91.2 Minus
X 23542271 X 21942769..21942915 1568..1421 510 91.2 Minus
Xmm 1049845 Xmm 900015..900161 1568..1421 510 91.2 Minus
X 23542271 X 21707434..21707628 1618..1423 495 84.7 Minus
X 23542271 X 23201838..23201975 1417..1554 480 89.9 Plus
2R 25286936 2R 5020086..5020217 1547..1416 480 90.9 Minus
3R 32079331 3R 364641..364771 1416..1547 475 92.4 Plus
2R 25286936 2R 2204261..2204406 1568..1422 475 89.8 Minus
2R 25286936 2R 2196279..2196423 1568..1423 470 89.7 Minus
3L 28110227 3L 24559992..24560125 1423..1554 455 91 Plus
2R 25286936 2R 5617837..5617962 1547..1421 450 92.1 Minus
3L 28110227 3L 23842439..23842572 1421..1554 445 88.8 Plus
3L 28110227 3L 25098295..25098435 1554..1416 445 89.4 Minus
3L 28110227 3L 24557411..24557544 1423..1554 440 90.3 Plus
2L 23513712 2L 23456064..23456187 1547..1423 440 92 Minus
3R 32079331 3R 376056..376179 1423..1547 440 92 Plus
2L 23513712 2L 23462561..23462682 1543..1421 430 91.9 Minus
2R 25286936 2R 545492..545631 1554..1415 430 87.1 Minus
2R 25286936 2R 2713193..2713314 1423..1545 430 91.9 Plus
2R 25286936 2R 2719417..2719538 1423..1545 430 91.9 Plus
3L 28110227 3L 24563945..24564078 1423..1554 425 89.6 Plus
Y 3667352 Y 677608..677735 1420..1547 415 88.3 Plus
X 23542271 X 21919923..21920022 1423..1522 410 94 Plus
3L 28110227 3L 23194267..23194395 1417..1545 390 86.8 Plus
3L 28110227 3L 23546450..23546578 1417..1545 390 86.8 Plus
X 23542271 X 21764942..21765062 1554..1434 380 87.6 Minus
2R 25286936 2R 5590140..5590230 1423..1513 380 94.5 Plus
U 3151297 U 2647128..2647218 1513..1423 380 94.5 Minus
3L 28110227 3L 25457759..25457848 1549..1460 375 94.4 Minus
2R 25286936 2R 2706196..2706306 1434..1545 375 91.1 Plus
2R 25286936 2R 5596699..5596789 1423..1513 365 93.4 Plus
2R 25286936 2R 4888955..4889085 1554..1424 340 84 Minus
Y 3667352 Y 2611463..2611551 1547..1459 340 92.1 Minus
2L 23513712 2L 21578012..21578091 1500..1421 325 93.8 Minus
Y 3667352 Y 684726..684853 1547..1417 260 81.7 Minus
3L 28110227 3L 27378006..27378180 1618..1441 245 81 Minus
2R 25286936 2R 5583599..5583683 1483..1568 245 88.4 Plus
3L 28110227 3L 23845819..23845887 1486..1554 240 89.9 Plus
3R 32079331 3R 884605..884679 1525..1451 240 88 Minus
3L 28110227 3L 27370759..27370910 1618..1464 235 82.7 Minus
2L 23513712 2L 22789563..22789636 1554..1481 235 87.8 Minus
3R 32079331 3R 871502..871566 1487..1423 235 90.8 Minus
2R 25286936 2R 863454..863527 1481..1554 235 87.8 Plus
X 23542271 X 22125817..22125991 1618..1441 230 80.4 Minus
U 3151297 U 1068341..1068407 1423..1489 230 89.6 Plus
2L 23513712 2L 22524896..22525048 1464..1619 225 82.2 Plus
2R 25286936 2R 5317291..5317353 1485..1423 225 90.5 Minus
3L 28110227 3L 25855078..25855252 1441..1618 215 79.9 Plus
X 23542271 X 23438329..23438503 1441..1618 215 79.9 Plus
2R 25286936 2R 3822361..3822514 1464..1620 215 81.6 Plus
2R 25286936 2R 1485276..1485450 1618..1441 205 77 Minus
2R 25286936 2R 2215640..2215704 1421..1485 205 87.7 Plus
2R 25286936 2R 2264565..2264629 1485..1421 205 87.7 Minus
2R 25286936 2R 2312049..2312101 1475..1423 205 92.5 Minus
2R 25286936 2R 5583555..5583602 1416..1463 195 93.8 Plus
3L 28110227 3L 27351359..27351438 1422..1501 190 82.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20468663..20470105 177..1620 7150 99.7 Plus
3L 28103327 3L 27217986..27218187 1419..1620 995 99.5 Plus
3L 28103327 3L 20477046..20477243 1423..1620 990 100 Plus
X 23527363 X 10356946..10357149 1417..1620 990 99 Plus
2L 23513712 2L 3251547..3251746 1421..1620 985 99.5 Plus
X 23527363 X 5111738..5111936 1620..1422 980 99.4 Minus
3L 28103327 3L 27225129..27225326 1423..1620 975 99.4 Plus
X 23527363 X 10364056..10364253 1423..1620 975 99.4 Plus
X 23527363 X 5104634..5104831 1620..1423 975 99.4 Minus
3R 31820162 3R 30822460..30822663 1620..1417 975 98.5 Minus
2L 23513712 2L 3258653..3258850 1423..1620 975 99.4 Plus
3R 31820162 3R 30815323..30815520 1620..1423 960 98.9 Minus
3L 28103327 3L 20467568..20467743 3..178 880 100 Plus
3L 28103327 3L 27822908..27823067 1578..1419 785 99.3 Minus
3L 28103327 3L 27513819..27513978 1578..1419 785 99.3 Minus
X 23527363 X 21716529..21716694 1578..1413 785 98.1 Minus
X 23527363 X 21893216..21893372 1578..1422 770 99.3 Minus
Unimproved_211000022218732_156_860 704 Unimproved_211000022218732_156_860 363..519 1578..1422 770 99.3 Minus
3L 28103327 3L 27806623..27806778 1578..1423 765 99.3 Minus
X 23527363 X 21709304..21709459 1578..1423 765 99.3 Minus
3R 31820162 3R 7436536..7436696 1418..1578 760 98.1 Plus
3R 31820162 3R 7443766..7443921 1423..1578 750 98.7 Plus
X 23527363 X 21734096..21734290 1618..1423 535 87.3 Minus
X 23527363 X 21927861..21928007 1568..1421 520 91.2 Minus
X 23527363 X 21854932..21855078 1568..1421 520 91.2 Minus
X 23527363 X 21784545..21784691 1568..1421 520 91.2 Minus
X 23527363 X 21692526..21692720 1618..1423 520 86.8 Minus
3R 31820162 3R 162219..162392 1416..1590 490 88 Plus
2R 25260384 2R 2204261..2204406 1568..1422 485 89.7 Minus
X 23527363 X 23186930..23187067 1417..1554 480 89.8 Plus
2R 25260384 2R 5021285..5021416 1547..1416 480 90.9 Minus
2R 25260384 2R 2196279..2196423 1568..1423 480 89.7 Minus
3L 28103327 3L 24553092..24553225 1423..1554 465 91 Plus
2R 25260384 2R 5618993..5619161 1590..1421 465 87.7 Minus
3L 28103327 3L 25091395..25091535 1554..1416 455 89.3 Minus
2L 23513712 2L 23456021..23456187 1590..1423 455 87.5 Minus
3L 28103327 3L 24550511..24550644 1423..1554 450 90.2 Plus
3R 31820162 3R 173634..173757 1423..1547 450 92 Plus
3L 28103327 3L 23835539..23835672 1421..1554 445 88.8 Plus
2R 25260384 2R 2719417..2719538 1423..1545 440 91.8 Plus
2R 25260384 2R 2713193..2713314 1423..1545 440 91.8 Plus
2L 23513712 2L 23462561..23462682 1543..1421 440 91.8 Minus
3L 28103327 3L 24557045..24557178 1423..1554 435 89.5 Plus
2R 25260384 2R 545492..545631 1554..1415 430 87.1 Minus
Y 3410481 Y 952755..952882 1420..1547 415 88.2 Plus
X 23527363 X 21905015..21905114 1423..1522 410 94 Plus
3L 28103327 3L 23539550..23539711 1417..1579 400 84 Plus
3L 28103327 3L 23187367..23187528 1417..1579 400 84 Plus
2R 25260384 2R 2706196..2706306 1434..1545 385 91 Plus
X 23527363 X 21750034..21750154 1554..1434 380 87.6 Minus
2R 25260384 2R 5591339..5591429 1423..1513 380 94.5 Plus
3L 28103327 3L 25450859..25450948 1549..1460 375 94.4 Minus
2R 25260384 2R 5597898..5597988 1423..1513 365 93.4 Plus
2R 25260384 2R 4890154..4890284 1554..1424 340 83.9 Minus
Unmapped_scaffold_03 170808 Unmapped_scaffold_03 115243..115331 1547..1459 340 92.1 Minus
2L 23513712 2L 21578012..21578091 1500..1421 325 93.7 Minus
2R 25260384 2R 5584798..5584882 1483..1568 255 88.3 Plus
3L 28103327 3L 23838919..23838987 1486..1554 240 89.8 Plus
3R 31820162 3R 682183..682257 1525..1451 240 88 Minus
2R 25260384 2R 863454..863527 1481..1554 235 87.8 Plus
3R 31820162 3R 669080..669144 1487..1423 235 90.7 Minus
2L 23513712 2L 22789563..22789636 1554..1481 235 87.8 Minus
2R 25260384 2R 5318490..5318552 1485..1423 225 90.4 Minus
Y 3410481 Y 959932..960000 1485..1417 210 86.9 Minus
2R 25260384 2R 2215640..2215704 1421..1485 205 87.6 Plus
2R 25260384 2R 2312049..2312101 1475..1423 205 92.4 Minus
2R 25260384 2R 2264565..2264629 1485..1421 205 87.6 Minus
2L 23513712 2L 22525002..22525048 1573..1619 205 95.7 Plus
3L 28103327 3L 25848307..25848352 1573..1618 200 95.6 Plus
3L 28103327 3L 27371106..27371151 1618..1573 200 95.6 Minus
3L 28103327 3L 27363859..27363904 1618..1573 200 95.6 Minus
X 23527363 X 22110909..22110954 1618..1573 200 95.6 Minus
2R 25260384 2R 5584754..5584801 1416..1463 195 93.7 Plus
2R 25260384 2R 3823666..3823713 1573..1620 195 93.7 Plus
3L 28103327 3L 27344459..27344538 1422..1501 190 82.5 Plus
2R 25260384 2R 1485719..1485802 1544..1460 190 83.5 Minus
X 23527363 X 23423550..23423595 1573..1618 185 93.4 Plus
2R 25260384 2R 1485276..1485321 1618..1573 185 93.4 Minus
3L 28103327 3L 24467416..24467461 1573..1618 170 91.3 Plus
3L 28103327 3L 24467287..24467390 1441..1547 170 80.3 Plus
3L 28103327 3L 25848178..25848252 1441..1515 165 81.3 Plus
3L 28103327 3L 27371206..27371280 1515..1441 165 81.3 Minus
X 23527363 X 23423421..23423495 1441..1515 165 81.3 Plus
2R 25260384 2R 1485376..1485450 1515..1441 165 81.3 Minus
Y 3410481 Y 959873..959923 1547..1497 165 88.2 Minus
3L 28103327 3L 27363959..27364010 1515..1464 155 86.5 Minus
2R 25260384 2R 3823560..3823611 1464..1515 155 86.5 Plus
2L 23513712 2L 22524896..22524947 1464..1515 155 86.5 Plus
X 23527363 X 22111009..22111083 1515..1441 150 80 Minus
Blast to na_te.dros performed 2019-03-15 20:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 1..196 1423..1618 962 99 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7138..7333 1423..1618 962 99 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 7417..7624 1420..1618 553 77.8 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 1..205 1423..1618 547 78 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 31..172 1475..1615 401 80.1 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 6606..6747 1475..1615 401 80.1 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 42..130 1455..1547 166 68.8 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 6530..6618 1455..1547 166 68.8 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 1..32 1423..1454 151 96.9 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 6576..6607 1423..1454 151 96.9 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4995..5074 1082..1162 114 61.7 Plus

RE61650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:08:40 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20463478..20463655 1..178 99 -> Plus
chr3L 20464577..20465809 179..1411 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:40 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1065 62..1126 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:31 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1065 62..1126 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:55 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 1..1065 62..1126 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:48 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1065 62..1126 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:53 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 1..1065 62..1126 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:08 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1126 2..1126 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:31 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1617 2..1618 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:55 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 1..1617 2..1618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:48 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RB 1..1126 2..1126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:53 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 1..1617 2..1618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:40 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474466..20474643 1..178 99 -> Plus
3L 20475565..20477003 179..1618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:40 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474466..20474643 1..178 99 -> Plus
3L 20475565..20477003 179..1618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:40 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474466..20474643 1..178 99 -> Plus
3L 20475565..20477003 179..1618 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:55 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20467566..20467743 1..178 99 -> Plus
arm_3L 20468665..20470103 179..1618 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:59 Download gff for RE61650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20468665..20470103 179..1618 99   Plus
3L 20467566..20467743 1..178 99 -> Plus

RE61650.hyp Sequence

Translation from 61 to 1125

> RE61650.hyp
MRLLLRNYSLMEAVKRLLPRPRKKIYNLGACFELVDIPKISYNPSELSEP
RFLEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDV
EVNSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLG
ATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKD
SIYGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMR
IQSVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLR
RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAG
TEAK*

RE61650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PB 354 CG5976-PB 1..354 1..354 1846 100 Plus
isoQC-PA 352 CG5976-PA 32..352 34..354 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 39..331 40..347 686 43.5 Plus
CG6168-PB 342 CG6168-PB 39..331 40..347 686 43.5 Plus
QC-PA 340 CG32412-PA 37..326 60..347 646 43.5 Plus

RE61650.pep Sequence

Translation from 61 to 1125

> RE61650.pep
MRLLLRNYSLMEAVKRLLPRPRKKIYNLGACFELVDIPKISYNPSELSEP
RFLEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDV
EVNSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLG
ATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKD
SIYGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMR
IQSVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLR
RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAG
TEAK*

RE61650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10348-PA 357 GF10348-PA 26..353 27..354 1425 82.6 Plus
Dana\GF24557-PA 349 GF24557-PA 18..313 40..350 641 44.7 Plus
Dana\GF10438-PA 356 GF10438-PA 45..320 60..331 624 43.9 Plus
Dana\GF10436-PA 317 GF10436-PA 16..290 60..347 321 30.3 Plus
Dana\GF10437-PA 327 GF10437-PA 34..306 59..343 280 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16120-PA 390 GG16120-PA 1..389 1..352 1746 85.9 Plus
Dere\GG13925-PA 341 GG13925-PA 39..331 40..347 737 47.4 Plus
Dere\GG14104-PA 344 GG14104-PA 37..330 60..347 666 43.6 Plus
Dere\GG14103-PA 268 GG14103-PA 17..204 60..298 206 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14553-PA 362 GH14553-PA 35..355 34..354 1297 75.1 Plus
Dgri\GH16891-PA 314 GH16891-PA 7..300 60..347 643 44.9 Plus
Dgri\GH16890-PA 267 GH16890-PA 36..266 58..302 312 32.9 Plus
Dgri\GH16886-PA 175 GH16886-PA 1..143 124..264 214 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PB 354 CG5976-PB 1..354 1..354 1846 100 Plus
isoQC-PA 352 CG5976-PA 32..352 34..354 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 39..331 40..347 686 43.5 Plus
CG6168-PB 342 CG6168-PB 39..331 40..347 686 43.5 Plus
QC-PA 340 CG32412-PA 37..326 60..347 646 43.5 Plus
CG32413-PB 332 CG32413-PB 35..309 60..346 348 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13400-PA 378 GI13400-PA 11..373 4..350 1399 70.8 Plus
Dmoj\GI12035-PA 205 GI12035-PA 1..191 160..347 383 41.1 Plus
Dmoj\GI12033-PA 273 GI12033-PA 36..273 60..311 307 33.5 Plus
Dmoj\GI12029-PA 234 GI12029-PA 7..233 60..301 272 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12792-PA 357 GL12792-PA 37..357 34..354 1512 86.6 Plus
Dper\GL22833-PA 368 GL22833-PA 35..334 40..350 717 44.6 Plus
Dper\GL21387-PA 265 GL21387-PA 33..258 58..299 300 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19273-PA 357 GA19273-PA 37..357 34..354 1503 86.3 Plus
Dpse\GA19404-PA 364 GA19404-PA 35..334 40..350 716 44.2 Plus
Dpse\GA16884-PA 357 GA16884-PA 50..347 60..351 655 43 Plus
Dpse\GA16885-PA 321 GA16885-PA 33..308 58..347 407 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22298-PA 354 GM22298-PA 1..354 1..354 1857 98.3 Plus
Dsec\GM13888-PA 340 GM13888-PA 37..326 60..347 666 44.2 Plus
Dsec\GM24759-PA 225 GM24759-PA 6..209 117..335 515 46.1 Plus
Dsec\GM13887-PA 269 GM13887-PA 17..204 60..298 211 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14891-PA 391 GD14891-PA 1..391 1..354 1812 88.5 Plus
Dsim\GD12810-PA 343 GD12810-PA 39..331 40..347 696 44.2 Plus
Dsim\GD13170-PA 340 GD13170-PA 37..326 60..347 665 44.2 Plus
Dsim\GD13169-PA 275 GD13169-PA 16..252 59..346 300 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11525-PA 359 GJ11525-PA 38..358 34..353 1391 81.3 Plus
Dvir\GJ13305-PA 342 GJ13305-PA 35..328 60..347 635 43.3 Plus
Dvir\GJ13304-PA 330 GJ13304-PA 48..329 58..353 436 34.3 Plus
Dvir\GJ13298-PA 278 GJ13298-PA 4..277 59..347 390 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12295-PA 357 GK12295-PA 40..354 34..348 1394 82.2 Plus
Dwil\GK17529-PA 343 GK17529-PA 44..341 58..352 657 43 Plus
Dwil\GK19272-PA 228 GK19272-PA 1..199 133..354 293 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19688-PA 351 GE19688-PA 32..351 34..354 1589 92.8 Plus
Dyak\GE20526-PA 344 GE20526-PA 37..330 60..347 666 44.3 Plus
Dyak\GE20221-PA 344 GE20221-PA 39..332 40..347 642 45.2 Plus
Dyak\GE20525-PA 214 GE20525-PA 17..205 60..298 233 31.4 Plus
Dyak\GE19687-PA 120 GE19687-PA 1..52 1..52 207 78.8 Plus