Clone RE61793 Report

Search the DGRC for RE61793

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:617
Well:93
Vector:pFlc-1
Associated Gene/TranscriptTb-RA
Protein status:RE61793.pep: gold
Preliminary Size:852
Sequenced Size:1042

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5480 2001-12-14 Blastp of sequenced clone
CG5480 2002-01-01 Sim4 clustering to Release 2
CG5480 2003-01-01 Sim4 clustering to Release 3
Tb 2008-04-29 Release 5.5 accounting
Tb 2008-08-15 Release 5.9 accounting
Tb 2008-12-18 5.12 accounting

Clone Sequence Records

RE61793.complete Sequence

1042 bp (1042 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071551

> RE61793.complete
GGTCGCATTAACAGTTTACACCTCCCGGCGTGCCCAACACGTTAACAGAT
TGGATCGAATATTGGCTAGGATAGGGCTATCAATATGCGTGGATTTATTA
TTTTTGCTGTCTTGGCTGTGGCTCGCGCTGATGTAGGCGGCTATAACTAT
GGAGCTGGCATTGGATCAGGCGGATCCATCTCGGGAGGCTCTCTGTCTGG
AGGCTCCATCTCTGGAGGCTCGATCTCAGGTGGCTCCATCTCAGGTGGCT
CCATCTCAGGTGGCTCCATTTCTGGTGGTTCCCTTTCTAGTGGTTCCCTG
TCCGGGGGATCTTATTCCACTAACTACGCTCCTGTAAACACCGAATTTAA
CAAGGAGTTCTTCACCTACTCCGCTCCCGAGGCCGATTTTGAGGATAATA
AGAGTGTCAGTGATCTGGCTGCTACTCTGAAGAAGAACCTCCGTGTGGTT
TTCATCAGGGCCCCCGAGAATAAGGGTCTGGAGAACGCCGCTCTGGCCTT
GGCCAAGCAGGCTGCCGAGCAGCAGACCGCCATCTATGTCCTGACCAAAC
AGGGTGATCTGTCCAGCCTGGCCAACCAGCTGCAGAACCTGAACCATGTG
AGCGCCAGCAAGCCGGAGGTGCATTTCGTCAAGTACCGCACCCAGCAGGA
CGCCATCAATGCCCAGCGTACCATTCAGCAGGAGTACGAGCGTCTGGGTG
GAGCCAGCACCTCCTACAACGGAGGCGTGGCACCAGTCCTGGACTTTGCC
ACCAAAGTGCAGCAACAGCAAGAGCAGCAGCAGCAACAGCAACAGCAGCA
GGTGCAGCTGATTGATGAGCGTCGGCCTTCCAGCGGAAGTGTAAGCGCCG
AACTGGAGGCTCCTTCGGCAGGATATATTCCACCACCAGCCGCAGCGCCT
AGTGCCACGTACCTGCCTGTGAACAAGGTCAAGTAGGAAACCTGCAAGAC
CACATTCTTATTTACGAATTAGCTCACACATTCTCCTTTAAGTGCTACCG
TATAAAATATAAACTTAACTTAATGTAAAAAAAAAAAAAAAA

RE61793.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tb-RA 1167 Tb-RA 76..1098 5..1027 5115 100 Plus
Tb.b 1435 Tb.b 414..1435 5..1026 5110 100 Plus
Tb.a 1116 Tb.a 517..1116 427..1026 2730 97 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22479708..22480634 100..1026 4545 99.4 Plus
chr3R 27901430 chr3R 22479552..22479646 5..99 475 100 Plus
chr3R 27901430 chr3R 22451240..22451479 678..439 360 76.7 Minus
chr3R 27901430 chr3R 22457287..22457605 428..746 320 73.4 Plus
chr3R 27901430 chr3R 22442827..22443150 427..750 315 73.1 Plus
chr3R 27901430 chr3R 22453422..22453540 439..557 310 84 Plus
chr3R 27901430 chr3R 22455574..22455685 442..553 305 84.8 Plus
chr3R 27901430 chr3R 22445968..22446075 558..451 300 85.2 Minus
chr3R 27901430 chr3R 22449436..22449549 552..439 285 83.3 Minus
chr3R 27901430 chr3R 22448080..22448182 553..451 275 84.5 Minus
chr3R 27901430 chr3R 22463576..22463790 427..641 250 74.4 Plus
chr3R 27901430 chr3R 22479813..22479890 175..252 210 84.6 Plus
chr3R 27901430 chr3R 22479783..22479860 205..282 210 84.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26656605..26657532 100..1027 4640 100 Plus
3R 32079331 3R 26656449..26656543 5..99 475 100 Plus
3R 32079331 3R 26628126..26628365 678..439 360 76.7 Minus
3R 32079331 3R 26619706..26620025 427..746 340 73.8 Plus
3R 32079331 3R 26630307..26630425 439..557 325 84.9 Plus
3R 32079331 3R 26632459..26632570 442..553 305 84.8 Plus
3R 32079331 3R 26634173..26634491 428..746 305 73 Plus
3R 32079331 3R 26622847..26622954 558..451 300 85.2 Minus
3R 32079331 3R 26626320..26626433 552..439 285 83.3 Minus
3R 32079331 3R 26624962..26625064 553..451 275 84.5 Minus
3R 32079331 3R 26640455..26640669 427..641 265 74.9 Plus
3R 32079331 3R 26656680..26656757 205..282 210 84.6 Plus
3R 32079331 3R 26656710..26656787 175..252 210 84.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26397436..26398363 100..1027 4640 100 Plus
3R 31820162 3R 26397280..26397374 5..99 475 100 Plus
3R 31820162 3R 26369077..26369196 558..439 345 85.8 Minus
3R 31820162 3R 26371138..26371256 439..557 325 84.8 Plus
3R 31820162 3R 26360537..26360663 427..553 305 82.6 Plus
3R 31820162 3R 26373290..26373401 442..553 305 84.8 Plus
3R 31820162 3R 26363678..26363785 558..451 300 85.1 Minus
3R 31820162 3R 26375004..26375134 428..558 295 81.6 Plus
3R 31820162 3R 26367151..26367264 552..439 285 83.3 Minus
3R 31820162 3R 26365793..26365895 553..451 275 84.4 Minus
3R 31820162 3R 26381358..26381441 499..582 210 83.3 Plus
3R 31820162 3R 26360719..26360856 609..746 195 76 Plus
3R 31820162 3R 26368957..26369026 678..609 155 81.4 Minus
3R 31820162 3R 26373457..26373537 609..689 150 79 Plus
3R 31820162 3R 26366978..26367087 725..616 145 75.4 Minus
3R 31820162 3R 26363558..26363627 678..609 140 80 Minus
3R 31820162 3R 26371308..26371377 609..678 140 80 Plus
Blast to na_te.dros performed 2019-03-16 12:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1566 748..808 197 80.3 Plus

RE61793.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:15 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22479545..22479646 1..99 97 -> Plus
chr3R 22479708..22480634 100..1026 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:43 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 1..852 85..936 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:51 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 1..852 85..936 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:48:04 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 1..852 85..936 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:02 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 1..852 85..936 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:28 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 1..852 85..936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:47 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 2..1026 2..1026 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:51 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 2..1026 2..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:48:04 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 6..1031 1..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:02 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 2..1026 2..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:28 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
Tb-RA 6..1031 1..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:15 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26656445..26656543 1..99 97 -> Plus
3R 26656605..26657531 100..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:15 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26656445..26656543 1..99 97 -> Plus
3R 26656605..26657531 100..1026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:15 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26656445..26656543 1..99 97 -> Plus
3R 26656605..26657531 100..1026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:48:04 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22482167..22482265 1..99 97 -> Plus
arm_3R 22482327..22483253 100..1026 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:34 Download gff for RE61793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26397436..26398362 100..1026 100   Plus
3R 26397276..26397374 1..99 97 -> Plus

RE61793.pep Sequence

Translation from 84 to 935

> RE61793.pep
MRGFIIFAVLAVARADVGGYNYGAGIGSGGSISGGSLSGGSISGGSISGG
SISGGSISGGSISGGSLSSGSLSGGSYSTNYAPVNTEFNKEFFTYSAPEA
DFEDNKSVSDLAATLKKNLRVVFIRAPENKGLENAALALAKQAAEQQTAI
YVLTKQGDLSSLANQLQNLNHVSASKPEVHFVKYRTQQDAINAQRTIQQE
YERLGGASTSYNGGVAPVLDFATKVQQQQEQQQQQQQQQVQLIDERRPSS
GSVSAELEAPSAGYIPPPAAAPSATYLPVNKVK*

RE61793.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16450-PA 256 GF16450-PA 1..256 1..283 873 73.4 Plus
Dana\GF18571-PA 234 GF18571-PA 1..202 1..223 465 44 Plus
Dana\GF16449-PA 263 GF16449-PA 1..219 1..221 452 45 Plus
Dana\GF16446-PA 245 GF16446-PA 76..219 81..224 439 58.3 Plus
Dana\GF18573-PA 246 GF18573-PA 1..216 1..221 428 48.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11495-PA 254 GG11495-PA 1..254 1..283 884 79.5 Plus
Dere\GG11489-PA 274 GG11489-PA 1..270 1..283 487 44.3 Plus
Dere\GG12175-PA 244 GG12175-PA 1..227 1..236 465 43.4 Plus
Dere\GG12179-PA 239 GG12179-PA 1..212 1..224 455 46.4 Plus
Dere\GG11494-PA 262 GG11494-PA 1..217 1..221 450 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18733-PA 249 GH18733-PA 1..226 1..258 734 58.9 Plus
Dgri\GH18876-PA 232 GH18876-PA 1..202 1..224 481 46.2 Plus
Dgri\GH18726-PA 286 GH18726-PA 1..282 1..283 475 41 Plus
Dgri\GH18874-PA 229 GH18874-PA 68..213 87..232 457 56.8 Plus
Dgri\GH23186-PA 237 GH23186-PA 1..215 1..228 436 43.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tb-PA 283 CG5480-PA 1..283 1..283 1409 100 Plus
TwdlL-PA 285 CG6447-PA 1..269 1..233 623 51.1 Plus
TwdlB-PA 286 CG6478-PA 1..269 1..233 616 50.7 Plus
TwdlM-PA 288 CG5468-PA 1..273 1..233 606 50 Plus
TwdlL-PB 279 CG6447-PB 3..263 9..233 600 51.1 Plus
TwdlN-PA 309 CG5476-PA 60..290 16..233 501 50.2 Plus
TwdlJ-PB 274 CG5471-PB 1..267 1..280 494 43.1 Plus
TwdlK-PA 247 CG6460-PA 1..220 1..224 477 47.3 Plus
TwdlQ-PA 245 CG14250-PA 1..230 1..243 472 42.4 Plus
TwdlH-PA 241 CG31080-PA 1..220 1..229 465 45.4 Plus
TwdlO-PA 229 CG6452-PA 1..221 1..280 460 41.4 Plus
TwdlD-PA 256 CG14243-PA 1..248 1..267 441 42.2 Plus
TwdlP-PA 220 CG14240-PA 14..206 43..238 430 47.4 Plus
TwdlR-PA 325 CG31081-PA 60..240 80..278 312 38.9 Plus
TwdlW-PA 308 CG4060-PA 131..279 90..239 263 38.8 Plus
TwdlV-PA 251 CG14640-PA 1..204 1..218 259 33 Plus
TwdlX-PA 346 CG32571-PA 64..275 19..218 253 35.9 Plus
TwdlF-PA 354 CG14639-PA 141..350 90..278 248 33.3 Plus
Twdlalpha-PA 388 CG32574-PA 91..300 20..217 241 33 Plus
TwdlG-PC 278 CG14643-PC 1..243 1..218 235 30.7 Plus
TwdlG-PB 278 CG14643-PB 1..243 1..218 235 30.7 Plus
TwdlG-PA 278 CG14643-PA 1..243 1..218 235 30.7 Plus
TwdlY-PA 247 CG32570-PA 34..206 47..218 227 37.2 Plus
TwdlS-PA 228 CG14242-PA 34..224 81..267 197 31.3 Plus
TwdlT-PA 286 CG5812-PA 50..231 18..190 184 30.4 Plus
TwdlZ-PB 210 CG32569-PB 9..166 66..218 166 34.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22885-PA 290 GI22885-PA 1..290 1..283 805 61.3 Plus
Dmoj\GI22881-PA 240 GI22881-PA 1..215 1..225 482 47.6 Plus
Dmoj\GI24737-PA 231 GI24737-PA 1..201 1..224 457 44.2 Plus
Dmoj\GI24731-PA 233 GI24731-PA 1..225 1..253 456 41.5 Plus
Dmoj\GI22884-PA 255 GI22884-PA 1..217 1..224 455 48.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23106-PA 301 GL23106-PA 86..301 77..283 792 84.8 Plus
Dper\GL24435-PA 251 GL24435-PA 1..227 1..233 487 44.9 Plus
Dper\GL23102-PA 264 GL23102-PA 1..238 1..224 474 44.1 Plus
Dper\GL23100-PA 293 GL23100-PA 1..289 1..283 458 42.7 Plus
Dper\GL23105-PA 254 GL23105-PA 1..218 1..227 443 44.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18913-PA 299 GA18913-PA 1..299 1..283 824 69.6 Plus
Dpse\GA12860-PA 247 GA12860-PA 1..223 1..233 479 44.6 Plus
Dpse\GA27141-PA 264 GA27141-PA 1..239 1..225 477 45.6 Plus
Dpse\GA12853-PA 225 GA12853-PA 1..197 1..224 442 47.1 Plus
Dpse\GA26272-PA 222 GA26272-PA 1..190 1..224 440 44 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10338-PA 262 GM10338-PA 1..262 1..283 955 89.4 Plus
Dsec\GM10172-PA 244 GM10172-PA 1..227 1..236 477 44.4 Plus
Dsec\GM10337-PA 256 GM10337-PA 1..214 1..223 458 46.9 Plus
Dsec\GM10334-PA 241 GM10334-PA 70..220 79..229 449 57 Plus
Dsec\GM10737-PA 223 GM10737-PA 1..190 1..225 432 46.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21298-PA 284 GD21298-PA 1..284 1..283 919 92.7 Plus
Dsim\GD18124-PA 245 GD18124-PA 1..228 1..236 480 44.4 Plus
Dsim\GD21297-PA 256 GD21297-PA 1..214 1..223 460 46.7 Plus
Dsim\GD21294-PA 241 GD21294-PA 70..220 79..229 452 57.6 Plus
Dsim\GD21292-PA 274 GD21292-PA 1..270 1..283 433 44.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14180-PA 255 GJ14180-PA 1..255 1..283 695 63.3 Plus
Dvir\GJ14557-PA 226 GJ14557-PA 1..204 1..223 491 46.6 Plus
Dvir\GJ14173-PA 284 GJ14173-PA 1..280 1..283 488 40.6 Plus
Dvir\GJ14563-PA 289 GJ14563-PA 128..270 87..229 449 58 Plus
Dvir\GJ14179-PA 255 GJ14179-PA 1..217 1..224 445 46.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13327-PA 274 GK13327-PA 1..274 1..283 850 68.4 Plus
Dwil\GK13956-PA 242 GK13956-PA 1..223 1..235 493 46.4 Plus
Dwil\GK13324-PA 260 GK13324-PA 2..216 1..221 448 45.1 Plus
Dwil\GK13321-PA 289 GK13321-PA 7..285 4..283 444 42.2 Plus
Dwil\GK13959-PA 262 GK13959-PA 1..253 1..266 439 42.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23686-PA 288 GE23686-PA 86..288 77..283 868 89.9 Plus
Dyak\GE10619-PA 245 GE10619-PA 1..228 1..236 485 44.4 Plus
Dyak\GE23685-PA 268 GE23685-PA 1..222 1..227 467 47.4 Plus
Dyak\GE23681-PA 234 GE23681-PA 62..213 78..229 451 57.2 Plus
Dyak\GE23679-PA 274 GE23679-PA 8..270 5..283 426 42.7 Plus

RE61793.hyp Sequence

Translation from 84 to 935

> RE61793.hyp
MRGFIIFAVLAVARADVGGYNYGAGIGSGGSISGGSLSGGSISGGSISGG
SISGGSISGGSISGGSLSSGSLSGGSYSTNYAPVNTEFNKEFFTYSAPEA
DFEDNKSVSDLAATLKKNLRVVFIRAPENKGLENAALALAKQAAEQQTAI
YVLTKQGDLSSLANQLQNLNHVSASKPEVHFVKYRTQQDAINAQRTIQQE
YERLGGASTSYNGGVAPVLDFATKVQQQQEQQQQQQQQQVQLIDERRPSS
GSVSAELEAPSAGYIPPPAAAPSATYLPVNKVK*

RE61793.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Tb-PA 283 CG5480-PA 1..283 1..283 1409 100 Plus
TwdlL-PA 285 CG6447-PA 1..269 1..233 623 51.1 Plus
TwdlB-PA 286 CG6478-PA 1..269 1..233 616 50.7 Plus
TwdlM-PA 288 CG5468-PA 1..273 1..233 606 50 Plus
TwdlL-PB 279 CG6447-PB 3..263 9..233 600 51.1 Plus