Clone RE62259 Report

Search the DGRC for RE62259

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:622
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG31813-RA
Protein status:RE62259.pep: gold
Sequenced Size:666

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31813 2002-09-02 Blastp of sequenced clone
CG31813 2003-01-01 Sim4 clustering to Release 3
CG31813 2008-04-29 Release 5.5 accounting
CG31813 2008-08-15 Release 5.9 accounting
CG31813 2008-12-18 5.12 accounting

Clone Sequence Records

RE62259.complete Sequence

666 bp (666 high quality bases) assembled on 2002-09-02

GenBank Submission: BT001701

> RE62259.complete
TCACAACCACTTCCGGCCTTCCACAAGCAACAGTTCGACTGCAACCAACG
ATATGTCAGCCAAATATACACTGATCTTTGCCCTGGCGGCTCTCTGCTGT
CTGGTGTTCTCCACCGAGGCGGCGGCCCAGCGCAGCCGAGTTCTCAGCTC
TCGCCGTGGCTCCGAGCTGGTCGAGAAGACGTCGGACAACAAGGAAGACT
CCGAGCTGGCCGCCCAGGAGCAAGACCTGGAGCGCCAGGAGCAGGAGGAG
CAGAATGACAGACTGGAGGGACGCAGCGATGATGTTGCCGAGGGCAGCGA
CAACAAAGAGGACAAGGAGACCGCCACCAACAACAAGGACACCATCGTGA
AGCCCAACAAGGATGACGCCCGTGCCCGCCGCATCGTTCGTGCCGGTCGT
CGTCGTGGTGGACGCCGCGGTGGTCGCCGTGGAGGTCGTCGTAGTGCACG
CAAATCCGTGCGCCGTGGCGGACGACGAGGTGGACGCAGGCGCGGTGGAC
GACGTGGTCGTGGCGGTGCTCGCCGTCGCACCTCCGTGAAGAGGCGTTCC
GGCAAGGGCAACAAGGCCTAAGAAGTTCCCCTCACAGATATAAGACTAAC
TGCCCGATCCACCGATTCGATACACACACAAATAAATTATGATTCTAACG
AAAAAAAAAAAAAAAA

RE62259.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RA 654 CG31813-RA 2..654 1..653 3265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13734830..13735479 1..650 3250 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736141..13736793 1..653 3265 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736141..13736793 1..653 3265 100 Plus
Blast to na_te.dros performed 2019-03-15 14:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 206..161 113 71.7 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 513..381 106 55.7 Minus

RE62259.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:28:41 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13734830..13735479 1..650 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:28:57 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 53..571 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:48 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 53..571 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:29:29 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 53..571 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:06 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 53..571 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:59:08 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 53..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:02:32 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 2..651 1..650 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:48 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 2..651 1..650 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:29:29 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 4..653 1..650 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:06 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 2..651 1..650 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:59:08 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 4..653 1..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:41 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736141..13736790 1..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:41 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736141..13736790 1..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:28:41 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736141..13736790 1..650 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:29:29 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736141..13736790 1..650 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:15 Download gff for RE62259.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736141..13736790 1..650 100   Plus

RE62259.hyp Sequence

Translation from 0 to 570

> RE62259.hyp
HNHFRPSTSNSSTATNDMSAKYTLIFALAALCCLVFSTEAAAQRSRVLSS
RRGSELVEKTSDNKEDSELAAQEQDLERQEQEEQNDRLEGRSDDVAEGSD
NKEDKETATNNKDTIVKPNKDDARARRIVRAGRRRGGRRGGRRGGRRSAR
KSVRRGGRRGGRRRGGRRGRGGARRRTSVKRRSGKGNKA*

RE62259.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PB 172 CG31813-PB 1..172 18..189 862 100 Plus
CG31813-PA 172 CG31813-PA 1..172 18..189 862 100 Plus

RE62259.pep Sequence

Translation from 52 to 570

> RE62259.pep
MSAKYTLIFALAALCCLVFSTEAAAQRSRVLSSRRGSELVEKTSDNKEDS
ELAAQEQDLERQEQEEQNDRLEGRSDDVAEGSDNKEDKETATNNKDTIVK
PNKDDARARRIVRAGRRRGGRRGGRRGGRRSARKSVRRGGRRGGRRRGGR
RGRGGARRRTSVKRRSGKGNKA*

RE62259.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23017-PA 169 GF23017-PA 1..104 1..105 322 72.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23872-PA 153 GG23872-PA 1..110 1..120 309 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PB 172 CG31813-PB 1..172 1..172 862 100 Plus
CG31813-PA 172 CG31813-PA 1..172 1..172 862 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26081-PA 166 GL26081-PA 1..120 1..123 270 70.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16497-PA 166 GA16497-PA 1..120 1..123 269 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15146-PA 170 GM15146-PA 1..170 1..172 456 91.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23916-PA 170 GD23916-PA 1..170 1..172 453 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24508-PA 157 GK24508-PA 1..97 1..105 244 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\BG:DS08249.4-PA 168 GE18676-PA 1..168 1..172 417 87.2 Plus