BDGP Sequence Production Resources |
Search the DGRC for RE62265
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 622 |
Well: | 65 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Surf4-RA |
Protein status: | RE62265.pep: gold |
Preliminary Size: | 1008 |
Sequenced Size: | 1664 |
Gene | Date | Evidence |
---|---|---|
CG6202 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6202 | 2002-05-24 | Blastp of sequenced clone |
CG6202 | 2003-01-01 | Sim4 clustering to Release 3 |
Surf4 | 2008-04-29 | Release 5.5 accounting |
Surf4 | 2008-08-15 | Release 5.9 accounting |
Surf4 | 2008-12-18 | 5.12 accounting |
1664 bp (1664 high quality bases) assembled on 2002-05-24
GenBank Submission: AY118406
> RE62265.complete CATTGGCTATCGATAACGCAGCGATAACGATAGGCCCCATCACGGCTATA CTTTGTCGTGCGCGTGTGTTTTTAAGTTCCTGCCTTTTAATTCATGATTT TTTGGTAACTTAACAACAATTTGGAGAGCGACGCGACGCCCAAGAAGTCA GAAACGAATTGCCAAAGTGTCTCCACAGACGATTGCCCCAAAGTGAGAGA TCGGATCAGCCCAAAGCAGCCAACATGAGCATACCCAACGAGTACATAGC GAAAACGGAGGATGTGGCGGAACAGGTCATCAAGCGCGGCAAAAATGTGC TGCCCACAGTGGCCCGTTTGTGCCTCATCGCCACGTTCTTCGAGGACGGC CTGCGCATGTACATCCAATGGAACGAGCAGCGGGAGTACATGGACATGAG CTGGGGCTGCGGCAAGTTCCTGGCCACCGTCTTTGTGCTCGTCAACCTGT TGGGCCAACTGGGCGGCTGCGGCATGGTGATGGCCAGATTTAAGGTCGAC ATAGCGGTGGGACTGCTTTTCTTCATTGTGGTGTTGCAGACCGTTGCCTA CTCCATTCTGTGGGACTTCCAGTTCTTACTGCGAAACTTTGCACTCATCG GAGCCCTACTGCTCGTCCTGGCGGAAGCCAGGATAGAGGGGCGCAGCCTG TTTGCCGGCGTGCCATCGATGGGCGAAAACAAGCCCAAGAACTTCATGCA GCTGGCGGGCCGCATCCTGCTGGCCTTCATGTTCATCACTTTGATCCGCT TTGAGCTGAGCGTATGGCAAGTTATACAGGACATCATCGGCTCCATTCTG ATGGTGCTGGTCGTGCTGGGATACAAGACGAAGCTGTCCGCCCTGATTCT GGTGGCTCTGCTTACGATCCTGAACCTGTACCACAATGCCTGGTGGACCA TTCCGTCCTACAAGCCACTCAGGGATTTCTTGAAATACGACTTTTTCCAG ACTCTCTCGGTGATCGGTGGCCTCCTCATGATCGTGTCCTTGGGCCCTGG CGGCGTTTCCATGGACGAGCACAAGAAGAAGTGGTAGAGGCCAGGCAACG GTCGCTCCTTGAACGAAACACTTTCAACATTTGACTTTTACCGTGTTTTA CTCCTTCTGAGAAATGTTAGTTAGGAATTACCATAAAATGGGACAACAAC AGGAGCAGCATCAGCAGCACAACACCGGCACGTATAAGAACTTGACAATT TTCAATAAAGGGACTTCCGCAATACCCCTCTCCAATGGCTCACTTATTGG GATCGCCCCAACCCAACTCCAAATCCATTCGCGCACATTCAACGACAAAC TTCGACATTTTAAACATTTAGGACATTTTATTTTTGTACATAAAGAACAG GCAAGAAAAAAGTTTGGTCACTTTCGAGCCCACCCCAAATGAGAGACATA ACTGATTTTATATCTATGCTTGTCAATATCCATGTTTTTTGCCGATTTTT TTATATGATTTGTACACTCTTATAAATAAGTTGTAACCTTGGTGTTTGCC TTTTGTTGATTGCTAGAAGTTTGAATATGAAAACGATGTATAAAATATGA TGTACCAATTGACAATGATTTGTTTCTTTCGTTTATAAGCAAAAGTGTAA TAGAATTAAATTGTAACGTTTTAATAAACATAAAGATGAAAAACCGAGAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11168279..11168988 | 1648..948 | 3320 | 98.2 | Minus |
chr3R | 27901430 | chr3R | 11169048..11169464 | 950..534 | 2040 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 11170542..11170818 | 277..1 | 1370 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 11169524..11169790 | 539..273 | 1320 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15343652..15344353 | 1649..948 | 3510 | 100 | Minus |
3R | 32079331 | 3R | 15344413..15344829 | 950..534 | 2085 | 100 | Minus |
3R | 32079331 | 3R | 15345907..15346183 | 277..1 | 1370 | 99.6 | Minus |
3R | 32079331 | 3R | 15344889..15345155 | 539..273 | 1335 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15084483..15085184 | 1649..948 | 3510 | 100 | Minus |
3R | 31820162 | 3R | 15085244..15085660 | 950..534 | 2085 | 100 | Minus |
3R | 31820162 | 3R | 15086738..15087014 | 277..1 | 1370 | 99.6 | Minus |
3R | 31820162 | 3R | 15085720..15085986 | 539..273 | 1335 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11168279..11168985 | 951..1648 | 98 | <- | Minus |
chr3R | 11169048..11169458 | 540..950 | 99 | <- | Minus |
chr3R | 11169524..11169787 | 276..539 | 99 | <- | Minus |
chr3R | 11170544..11170818 | 1..275 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RB | 1..813 | 225..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RB | 1..813 | 225..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..813 | 225..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RB | 1..813 | 225..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..813 | 225..1037 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..1634 | 1..1634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..1648 | 1..1648 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..1641 | 8..1648 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..1634 | 1..1634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Surf4-RA | 1..1641 | 8..1648 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15344889..15345152 | 276..539 | 100 | <- | Minus |
3R | 15343653..15344350 | 951..1648 | 100 | <- | Minus |
3R | 15344413..15344823 | 540..950 | 100 | <- | Minus |
3R | 15345909..15346183 | 1..275 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15344889..15345152 | 276..539 | 100 | <- | Minus |
3R | 15343653..15344350 | 951..1648 | 100 | <- | Minus |
3R | 15344413..15344823 | 540..950 | 100 | <- | Minus |
3R | 15345909..15346183 | 1..275 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15344889..15345152 | 276..539 | 100 | <- | Minus |
3R | 15343653..15344350 | 951..1648 | 100 | <- | Minus |
3R | 15344413..15344823 | 540..950 | 100 | <- | Minus |
3R | 15345909..15346183 | 1..275 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11169375..11170072 | 951..1648 | 100 | <- | Minus |
arm_3R | 11170135..11170545 | 540..950 | 100 | <- | Minus |
arm_3R | 11170611..11170874 | 276..539 | 100 | <- | Minus |
arm_3R | 11171631..11171905 | 1..275 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15086740..15087014 | 1..275 | 99 | Minus | |
3R | 15084484..15085181 | 951..1648 | 100 | <- | Minus |
3R | 15085244..15085654 | 540..950 | 100 | <- | Minus |
3R | 15085720..15085983 | 276..539 | 100 | <- | Minus |
Translation from 224 to 1036
> RE62265.pep MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL LMIVSLGPGGVSMDEHKKKW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23237-PA | 270 | GF23237-PA | 1..270 | 1..270 | 1394 | 98.5 | Plus |
Dana\GF16071-PA | 270 | GF16071-PA | 3..270 | 5..270 | 431 | 43.3 | Plus |
Dana\GF15896-PA | 60 | GF15896-PA | 11..60 | 61..112 | 180 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20651-PA | 270 | GG20651-PA | 1..270 | 1..270 | 1398 | 99.3 | Plus |
Dere\GG17122-PA | 236 | GG17122-PA | 10..226 | 17..254 | 144 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16895-PA | 270 | GH16895-PA | 1..270 | 1..270 | 1355 | 95.2 | Plus |
Dgri\GH22787-PA | 276 | GH22787-PA | 11..276 | 8..270 | 526 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Surf4-PA | 270 | CG6202-PA | 1..270 | 1..270 | 1379 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10730-PA | 270 | GI10730-PA | 1..270 | 1..270 | 1368 | 96.7 | Plus |
Dmoj\GI15219-PA | 228 | GI15219-PA | 2..220 | 16..252 | 206 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13757-PA | 270 | GL13757-PA | 1..270 | 1..270 | 1394 | 98.5 | Plus |
Dper\GL22200-PA | 278 | GL22200-PA | 8..278 | 5..270 | 465 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19436-PB | 270 | GA19436-PB | 1..270 | 1..270 | 1394 | 98.5 | Plus |
Dpse\GA19436-PA | 270 | GA19436-PA | 1..270 | 1..270 | 1394 | 98.5 | Plus |
Dpse\GA27410-PA | 278 | GA27410-PA | 8..278 | 5..270 | 474 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25782-PA | 270 | GM25782-PA | 1..270 | 1..270 | 1398 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20359-PA | 256 | GD20359-PA | 1..256 | 1..270 | 1292 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10672-PA | 270 | GJ10672-PA | 1..270 | 1..270 | 1358 | 95.9 | Plus |
Dvir\GJ11021-PA | 277 | GJ11021-PA | 12..277 | 9..270 | 375 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11312-PA | 270 | GK11312-PA | 1..270 | 1..270 | 1304 | 95.6 | Plus |
Dwil\GK18983-PA | 268 | GK18983-PA | 6..268 | 8..270 | 501 | 45.7 | Plus |
Dwil\GK15560-PA | 230 | GK15560-PA | 8..226 | 16..255 | 169 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26387-PA | 270 | GE26387-PA | 1..270 | 1..270 | 1375 | 97.8 | Plus |
Translation from 224 to 1036
> RE62265.hyp MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL LMIVSLGPGGVSMDEHKKKW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Surf4-PA | 270 | CG6202-PA | 1..270 | 1..270 | 1379 | 100 | Plus |