Clone RE62265 Report

Search the DGRC for RE62265

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:622
Well:65
Vector:pFlc-1
Associated Gene/TranscriptSurf4-RA
Protein status:RE62265.pep: gold
Preliminary Size:1008
Sequenced Size:1664

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6202 2002-01-01 Sim4 clustering to Release 2
CG6202 2002-05-24 Blastp of sequenced clone
CG6202 2003-01-01 Sim4 clustering to Release 3
Surf4 2008-04-29 Release 5.5 accounting
Surf4 2008-08-15 Release 5.9 accounting
Surf4 2008-12-18 5.12 accounting

Clone Sequence Records

RE62265.complete Sequence

1664 bp (1664 high quality bases) assembled on 2002-05-24

GenBank Submission: AY118406

> RE62265.complete
CATTGGCTATCGATAACGCAGCGATAACGATAGGCCCCATCACGGCTATA
CTTTGTCGTGCGCGTGTGTTTTTAAGTTCCTGCCTTTTAATTCATGATTT
TTTGGTAACTTAACAACAATTTGGAGAGCGACGCGACGCCCAAGAAGTCA
GAAACGAATTGCCAAAGTGTCTCCACAGACGATTGCCCCAAAGTGAGAGA
TCGGATCAGCCCAAAGCAGCCAACATGAGCATACCCAACGAGTACATAGC
GAAAACGGAGGATGTGGCGGAACAGGTCATCAAGCGCGGCAAAAATGTGC
TGCCCACAGTGGCCCGTTTGTGCCTCATCGCCACGTTCTTCGAGGACGGC
CTGCGCATGTACATCCAATGGAACGAGCAGCGGGAGTACATGGACATGAG
CTGGGGCTGCGGCAAGTTCCTGGCCACCGTCTTTGTGCTCGTCAACCTGT
TGGGCCAACTGGGCGGCTGCGGCATGGTGATGGCCAGATTTAAGGTCGAC
ATAGCGGTGGGACTGCTTTTCTTCATTGTGGTGTTGCAGACCGTTGCCTA
CTCCATTCTGTGGGACTTCCAGTTCTTACTGCGAAACTTTGCACTCATCG
GAGCCCTACTGCTCGTCCTGGCGGAAGCCAGGATAGAGGGGCGCAGCCTG
TTTGCCGGCGTGCCATCGATGGGCGAAAACAAGCCCAAGAACTTCATGCA
GCTGGCGGGCCGCATCCTGCTGGCCTTCATGTTCATCACTTTGATCCGCT
TTGAGCTGAGCGTATGGCAAGTTATACAGGACATCATCGGCTCCATTCTG
ATGGTGCTGGTCGTGCTGGGATACAAGACGAAGCTGTCCGCCCTGATTCT
GGTGGCTCTGCTTACGATCCTGAACCTGTACCACAATGCCTGGTGGACCA
TTCCGTCCTACAAGCCACTCAGGGATTTCTTGAAATACGACTTTTTCCAG
ACTCTCTCGGTGATCGGTGGCCTCCTCATGATCGTGTCCTTGGGCCCTGG
CGGCGTTTCCATGGACGAGCACAAGAAGAAGTGGTAGAGGCCAGGCAACG
GTCGCTCCTTGAACGAAACACTTTCAACATTTGACTTTTACCGTGTTTTA
CTCCTTCTGAGAAATGTTAGTTAGGAATTACCATAAAATGGGACAACAAC
AGGAGCAGCATCAGCAGCACAACACCGGCACGTATAAGAACTTGACAATT
TTCAATAAAGGGACTTCCGCAATACCCCTCTCCAATGGCTCACTTATTGG
GATCGCCCCAACCCAACTCCAAATCCATTCGCGCACATTCAACGACAAAC
TTCGACATTTTAAACATTTAGGACATTTTATTTTTGTACATAAAGAACAG
GCAAGAAAAAAGTTTGGTCACTTTCGAGCCCACCCCAAATGAGAGACATA
ACTGATTTTATATCTATGCTTGTCAATATCCATGTTTTTTGCCGATTTTT
TTATATGATTTGTACACTCTTATAAATAAGTTGTAACCTTGGTGTTTGCC
TTTTGTTGATTGCTAGAAGTTTGAATATGAAAACGATGTATAAAATATGA
TGTACCAATTGACAATGATTTGTTTCTTTCGTTTATAAGCAAAAGTGTAA
TAGAATTAAATTGTAACGTTTTAATAAACATAAAGATGAAAAACCGAGAA
AAAAAAAAAAAAAA

RE62265.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-RA 1910 Surf4-RA 20..1668 1..1649 8230 99.9 Plus
Surf4-RB 1750 Surf4-RB 123..1605 167..1649 7415 100 Plus
Surf4-RB 1750 Surf4-RB 20..123 1..104 505 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11168279..11168988 1648..948 3320 98.2 Minus
chr3R 27901430 chr3R 11169048..11169464 950..534 2040 99.3 Minus
chr3R 27901430 chr3R 11170542..11170818 277..1 1370 99.6 Minus
chr3R 27901430 chr3R 11169524..11169790 539..273 1320 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15343652..15344353 1649..948 3510 100 Minus
3R 32079331 3R 15344413..15344829 950..534 2085 100 Minus
3R 32079331 3R 15345907..15346183 277..1 1370 99.6 Minus
3R 32079331 3R 15344889..15345155 539..273 1335 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15084483..15085184 1649..948 3510 100 Minus
3R 31820162 3R 15085244..15085660 950..534 2085 100 Minus
3R 31820162 3R 15086738..15087014 277..1 1370 99.6 Minus
3R 31820162 3R 15085720..15085986 539..273 1335 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:34:10 has no hits.

RE62265.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:35:30 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11168279..11168985 951..1648 98 <- Minus
chr3R 11169048..11169458 540..950 99 <- Minus
chr3R 11169524..11169787 276..539 99 <- Minus
chr3R 11170544..11170818 1..275 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:00 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RB 1..813 225..1037 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:38 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RB 1..813 225..1037 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:05:15 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..813 225..1037 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:16 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RB 1..813 225..1037 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:25 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..813 225..1037 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:10:13 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..1634 1..1634 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:37 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..1648 1..1648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:15 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..1641 8..1648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:16 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..1634 1..1634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:25 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
Surf4-RA 1..1641 8..1648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:35:30 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15344889..15345152 276..539 100 <- Minus
3R 15343653..15344350 951..1648 100 <- Minus
3R 15344413..15344823 540..950 100 <- Minus
3R 15345909..15346183 1..275 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:35:30 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15344889..15345152 276..539 100 <- Minus
3R 15343653..15344350 951..1648 100 <- Minus
3R 15344413..15344823 540..950 100 <- Minus
3R 15345909..15346183 1..275 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:35:30 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15344889..15345152 276..539 100 <- Minus
3R 15343653..15344350 951..1648 100 <- Minus
3R 15344413..15344823 540..950 100 <- Minus
3R 15345909..15346183 1..275 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:15 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11169375..11170072 951..1648 100 <- Minus
arm_3R 11170135..11170545 540..950 100 <- Minus
arm_3R 11170611..11170874 276..539 100 <- Minus
arm_3R 11171631..11171905 1..275 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:52 Download gff for RE62265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15086740..15087014 1..275 99   Minus
3R 15084484..15085181 951..1648 100 <- Minus
3R 15085244..15085654 540..950 100 <- Minus
3R 15085720..15085983 276..539 100 <- Minus

RE62265.pep Sequence

Translation from 224 to 1036

> RE62265.pep
MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN
EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF
IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG
ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY
KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL
LMIVSLGPGGVSMDEHKKKW*

RE62265.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23237-PA 270 GF23237-PA 1..270 1..270 1394 98.5 Plus
Dana\GF16071-PA 270 GF16071-PA 3..270 5..270 431 43.3 Plus
Dana\GF15896-PA 60 GF15896-PA 11..60 61..112 180 73.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20651-PA 270 GG20651-PA 1..270 1..270 1398 99.3 Plus
Dere\GG17122-PA 236 GG17122-PA 10..226 17..254 144 24 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16895-PA 270 GH16895-PA 1..270 1..270 1355 95.2 Plus
Dgri\GH22787-PA 276 GH22787-PA 11..276 8..270 526 44.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-PA 270 CG6202-PA 1..270 1..270 1379 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10730-PA 270 GI10730-PA 1..270 1..270 1368 96.7 Plus
Dmoj\GI15219-PA 228 GI15219-PA 2..220 16..252 206 24.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13757-PA 270 GL13757-PA 1..270 1..270 1394 98.5 Plus
Dper\GL22200-PA 278 GL22200-PA 8..278 5..270 465 44.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19436-PB 270 GA19436-PB 1..270 1..270 1394 98.5 Plus
Dpse\GA19436-PA 270 GA19436-PA 1..270 1..270 1394 98.5 Plus
Dpse\GA27410-PA 278 GA27410-PA 8..278 5..270 474 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25782-PA 270 GM25782-PA 1..270 1..270 1398 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20359-PA 256 GD20359-PA 1..256 1..270 1292 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10672-PA 270 GJ10672-PA 1..270 1..270 1358 95.9 Plus
Dvir\GJ11021-PA 277 GJ11021-PA 12..277 9..270 375 44 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11312-PA 270 GK11312-PA 1..270 1..270 1304 95.6 Plus
Dwil\GK18983-PA 268 GK18983-PA 6..268 8..270 501 45.7 Plus
Dwil\GK15560-PA 230 GK15560-PA 8..226 16..255 169 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26387-PA 270 GE26387-PA 1..270 1..270 1375 97.8 Plus

RE62265.hyp Sequence

Translation from 224 to 1036

> RE62265.hyp
MSIPNEYIAKTEDVAEQVIKRGKNVLPTVARLCLIATFFEDGLRMYIQWN
EQREYMDMSWGCGKFLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFF
IVVLQTVAYSILWDFQFLLRNFALIGALLLVLAEARIEGRSLFAGVPSMG
ENKPKNFMQLAGRILLAFMFITLIRFELSVWQVIQDIIGSILMVLVVLGY
KTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQTLSVIGGL
LMIVSLGPGGVSMDEHKKKW*

RE62265.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Surf4-PA 270 CG6202-PA 1..270 1..270 1379 100 Plus