BDGP Sequence Production Resources |
Search the DGRC for RE62347
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 623 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pur-alpha-RG |
Protein status: | RE62347.pep: gold |
Sequenced Size: | 2561 |
Gene | Date | Evidence |
---|---|---|
Pur-alpha-RD | 2010-12-07 | Manual selection by Ken Wan |
2561 bp assembled on 2011-04-20
GenBank Submission: BT126365.1
> RE62347.complete AGTTTTATCCGACGAACAAATAAAATAAGGGAGTGTCGATGTCATTTGTA AGGGGCAGTGCGTGTGTGTGTAGATGTTCAGGGGAATGTTGTACACCGGA CAAAAAGAATGGTTATACTATTAACTATATGCTGTCGTGTTGAGGCACAA GAGTAGTGTAACATTAAAAGTGTGTCGCTGAAAAGGAAGGAAGCGTAACT ATCTACCAAGCTTCGAGATTTTATAAATAGGTGGTCTCGTAATGTCCGAT TTGGGAAGTGGAGATGATGGCATCTCAGGATCAAGGTTCCTCAAGTAGGA ACGACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTG GCTACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAA ACAAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATG GTAGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGT GACCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAA CACCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAA AAGATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGA TTTTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAAT CGCTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATT TGTTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCG GAAGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGG ACAAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACT TCCGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGAT ATTTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTAC TGCCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAATAAACAACAT ACCGTGATTTACTAAGTTATATAAGAAGGCGCAAAAATAAAATTTTTAAT GGCGATTGACCAACCAATATATGTAAAGCTTGTAATGTCTGACATGGCTA AATTCTAAATCATGCGACTAATTAAGCTTAATGACAAACAAATATATTTA TTTTGTAGCATTTAGCCCAATATGTTTTAGTATTCTATAAATTCTATATA TAAATTAGTTAGAGTTACATTAGAGAAAATTAACTCTTAAAATCCATTTT GAACTCTAAATGTCCTTTTTTGGCTGGCTGTTTAGCTTCTACTTAGTGCA AGAAAATTTAATTTATTCATTGACTTGTTGGATTTGTCTTACAAGTGGAA ATAGAAAGCCTGTTTTATTTGTTTTTGGAACTCACCAAATATTCATATCA ATCGATCAATCTGTTTGGCACAAAGTTTTAATTTAGTTTGATTTTAATCA ACCTGAAATGAACAACAAAATTAATTTTCTTTTAAAGAATTATTAATCTC TTTGATTCATTATGTTATTTATTTTTTTTATCATTTACGTGGAGGAATAG GGAATAGCGGAAATCTACTGATAATGAGCAGTTAACGATAACAATCGATG TTTCGCACGCTTTTAAACCCAGTAAAAAAAGAAGTTCATATATAAGCCAA AACAATTACACACACTCCCAATAATGACTTTCGGTGGAAATTAATAATTA GTGCCATTTCTGTTGTAAATTTAAATATATATAGAACTTACTTTCGATTT AAAATTGATAATTTGTGTCACCTAGGGTCATACTTCTCATTAAATGTATT CATAAAGTTGATGGGTTATGCCACAATTAACTAATGTTAATGTAATTTGA AATATCTTTGACAAATTAAGAAAAATTGTTAAAGATTCTAGGAATAATAT GTTATATATATAATAATACAAATTAAAGTAACTCCTAAACTCGTTTTTAA AACAAAAGTTTCATGTGATCACGTAGAATAAAAACTTACTAAGTACGATG AACATGCATAGCAAAATAACAACATAGATCGAAAGCGCAACACAAGCACA TACCGGATAAATTTCCATAAAGGAATATCGTGTACAGATTGGGTATGCTA AGTAATAAATTAGCTGTACTAATTATTAAGTATTGAAATTTATCAGAATT TGGGTTCAATAAAGAGAGAAAAAAAATAAATGTATTCGCTCTCACAAATA AATTTATGATTTTATTCATATAATCGAAAGCTAGTTTACTAGATGAAATA TAAAAATAATTTAATTTACTATAATTCTATTGAAACTAAAGCATCCGAAA GTCCTACAAATTTCCATACTAGAGTCGATATTAATCAGACTATAAACACA AAATCTTTATAATTATCTGTCAAATGTAAGCAAGATGTTACAGATATTCA ACATAATATGTAGTTAACTTAAATGTTGTTTGCAAAAATACAAGTATTGT AAGAGTTTTGTGAATATAACATGGAAATAAAGTTGAATTTTAACGAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 586150..587806 | 888..2544 | 8240 | 99.8 | Plus |
chr4 | 1351717 | chr4 | 580644..580850 | 79..285 | 1035 | 100 | Plus |
chr4 | 1351717 | chr4 | 585089..585213 | 659..783 | 625 | 100 | Plus |
chr4 | 1351717 | chr4 | 584908..585031 | 539..662 | 620 | 100 | Plus |
chr4 | 1351717 | chr4 | 581018..581132 | 323..437 | 575 | 100 | Plus |
chr4 | 1351717 | chr4 | 585958..586066 | 781..889 | 545 | 100 | Plus |
chr4 | 1351717 | chr4 | 581265..581371 | 436..542 | 535 | 100 | Plus |
chr4 | 1351717 | chr4 | 578773..578850 | 1..78 | 390 | 100 | Plus |
chr4 | 1351717 | chr4 | 580921..580961 | 285..325 | 205 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 565601..567257 | 888..2544 | 8240 | 99.8 | Plus |
4 | 1348131 | 4 | 560095..560301 | 79..285 | 1035 | 100 | Plus |
4 | 1348131 | 4 | 564540..564664 | 659..783 | 625 | 100 | Plus |
4 | 1348131 | 4 | 564359..564482 | 539..662 | 620 | 100 | Plus |
4 | 1348131 | 4 | 560469..560583 | 323..437 | 575 | 100 | Plus |
4 | 1348131 | 4 | 565409..565517 | 781..889 | 545 | 100 | Plus |
4 | 1348131 | 4 | 560716..560822 | 436..542 | 535 | 100 | Plus |
4 | 1348131 | 4 | 558223..558300 | 1..78 | 390 | 100 | Plus |
4 | 1348131 | 4 | 560372..560412 | 285..325 | 205 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 565601..567257 | 888..2544 | 8240 | 99.8 | Plus |
4 | 1331231 | 4 | 560095..560301 | 79..285 | 1035 | 100 | Plus |
4 | 1331231 | 4 | 564540..564664 | 659..783 | 625 | 100 | Plus |
4 | 1331231 | 4 | 564359..564482 | 539..662 | 620 | 100 | Plus |
4 | 1331231 | 4 | 560469..560583 | 323..437 | 575 | 100 | Plus |
4 | 1331231 | 4 | 565409..565517 | 781..889 | 545 | 100 | Plus |
4 | 1331231 | 4 | 560716..560822 | 436..542 | 535 | 100 | Plus |
4 | 1331231 | 4 | 558223..558300 | 1..78 | 390 | 100 | Plus |
4 | 1331231 | 4 | 560372..560412 | 285..325 | 205 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2544..2792 | 2154..2403 | 150 | 53.5 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 5773..5885 | 1875..1989 | 137 | 62.4 | Plus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1237..1290 | 1812..1757 | 121 | 75.4 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1331..1458 | 2406..2530 | 119 | 57 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1512..1581 | 1292..1223 | 115 | 66.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 578773..578850 | 1..78 | 100 | -> | Plus |
chr4 | 580644..580849 | 79..284 | 100 | -> | Plus |
chr4 | 580921..580960 | 285..324 | 100 | -> | Plus |
chr4 | 581020..581132 | 325..437 | 100 | -> | Plus |
chr4 | 581267..581369 | 438..540 | 100 | -> | Plus |
chr4 | 584910..585028 | 541..659 | 100 | -> | Plus |
chr4 | 585090..585211 | 660..781 | 100 | -> | Plus |
chr4 | 585959..586064 | 782..887 | 100 | -> | Plus |
chr4 | 586150..587806 | 888..2545 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RC | 1..44 | 242..284 | 97 | -> | Plus |
Pur-alpha-RC | 67..825 | 285..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RG | 1..780 | 264..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RG | 1..780 | 264..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RD | 1..1226 | 1..1223 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RG | 1..2544 | 1..2544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pur-alpha-RG | 1..2544 | 1..2544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 560718..560820 | 438..540 | 100 | -> | Plus |
4 | 564361..564479 | 541..659 | 100 | -> | Plus |
4 | 564541..564662 | 660..781 | 100 | -> | Plus |
4 | 565410..565515 | 782..887 | 100 | -> | Plus |
4 | 558223..558300 | 1..78 | 100 | -> | Plus |
4 | 560095..560300 | 79..284 | 100 | -> | Plus |
4 | 560372..560411 | 285..324 | 100 | -> | Plus |
4 | 560471..560583 | 325..437 | 100 | -> | Plus |
4 | 565601..567257 | 888..2545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 560718..560820 | 438..540 | 100 | -> | Plus |
4 | 564361..564479 | 541..659 | 100 | -> | Plus |
4 | 564541..564662 | 660..781 | 100 | -> | Plus |
4 | 565410..565515 | 782..887 | 100 | -> | Plus |
4 | 558223..558300 | 1..78 | 100 | -> | Plus |
4 | 560095..560300 | 79..284 | 100 | -> | Plus |
4 | 560372..560411 | 285..324 | 100 | -> | Plus |
4 | 560471..560583 | 325..437 | 100 | -> | Plus |
4 | 565601..567257 | 888..2545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 560718..560820 | 438..540 | 100 | -> | Plus |
4 | 564361..564479 | 541..659 | 100 | -> | Plus |
4 | 564541..564662 | 660..781 | 100 | -> | Plus |
4 | 565410..565515 | 782..887 | 100 | -> | Plus |
4 | 558223..558300 | 1..78 | 100 | -> | Plus |
4 | 560095..560300 | 79..284 | 100 | -> | Plus |
4 | 560372..560411 | 285..324 | 100 | -> | Plus |
4 | 560471..560583 | 325..437 | 100 | -> | Plus |
4 | 565601..567257 | 888..2545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 585167..585288 | 660..781 | 100 | -> | Plus |
arm_4 | 586036..586141 | 782..887 | 100 | -> | Plus |
arm_4 | 578849..578926 | 1..78 | 100 | -> | Plus |
arm_4 | 580721..580926 | 79..284 | 100 | -> | Plus |
arm_4 | 580998..581037 | 285..324 | 100 | -> | Plus |
arm_4 | 581097..581209 | 325..437 | 100 | -> | Plus |
arm_4 | 581344..581446 | 438..540 | 100 | -> | Plus |
arm_4 | 584987..585105 | 541..659 | 100 | -> | Plus |
arm_4 | 586227..587883 | 888..2545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 560095..560300 | 79..284 | 100 | -> | Plus |
4 | 560372..560411 | 285..324 | 100 | -> | Plus |
4 | 560471..560583 | 325..437 | 100 | -> | Plus |
4 | 560718..560820 | 438..540 | 100 | -> | Plus |
4 | 564361..564479 | 541..659 | 100 | -> | Plus |
4 | 564541..564662 | 660..781 | 100 | -> | Plus |
4 | 565410..565515 | 782..887 | 100 | -> | Plus |
4 | 565601..567257 | 888..2545 | 99 | Plus | |
4 | 558223..558300 | 1..78 | 100 | -> | Plus |
Translation from 263 to 1042
> RE62347.pep MMASQDQGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRR GRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNL PEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA QGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNR GVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKMKKSSDSITAEIN LPTSSNSLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22832-PA | 86 | GF22832-PA | 1..86 | 174..259 | 444 | 94.2 | Plus |
Dana\GF22830-PA | 137 | GF22830-PA | 42..113 | 105..173 | 278 | 73.6 | Plus |
Dana\GF22830-PA | 137 | GF22830-PA | 24..109 | 10..91 | 260 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16390-PA | 274 | GG16390-PA | 22..274 | 7..259 | 1336 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24015-PA | 188 | GH24015-PA | 18..188 | 3..173 | 821 | 92.4 | Plus |
Dgri\GH24015-PA | 188 | GH24015-PA | 43..181 | 105..237 | 204 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pur-alpha-PG | 259 | CG1507-PG | 1..259 | 1..259 | 1337 | 100 | Plus |
Pur-alpha-PD | 260 | CG1507-PD | 1..260 | 1..259 | 1325 | 99.6 | Plus |
Pur-alpha-PE | 274 | CG1507-PE | 22..274 | 7..259 | 1305 | 99.6 | Plus |
Pur-alpha-PC | 274 | CG1507-PC | 22..274 | 7..259 | 1305 | 99.6 | Plus |
Pur-alpha-PA | 274 | CG1507-PA | 22..274 | 7..259 | 1305 | 99.6 | Plus |
Pur-alpha-PF | 275 | CG1507-PF | 22..275 | 7..259 | 1293 | 99.2 | Plus |
Pur-alpha-PB | 275 | CG1507-PB | 22..275 | 7..259 | 1293 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14049-PA | 273 | GI14049-PA | 18..273 | 3..259 | 1233 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18143-PA | 275 | GL18143-PA | 23..275 | 7..259 | 1308 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26800-PA | 275 | GM26800-PA | 22..275 | 7..259 | 1335 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19804-PA | 274 | GJ19804-PA | 18..274 | 3..259 | 1263 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13584-PA | 274 | GK13584-PA | 18..274 | 3..259 | 1281 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14552-PA | 274 | GE14552-PA | 22..274 | 7..259 | 1334 | 98.4 | Plus |
Translation from 263 to 1042
> RE62347.hyp MMASQDQGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRR GRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNL PEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA QGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNR GVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKMKKSSDSITAEIN LPTSSNSLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pur-alpha-PG | 259 | CG1507-PG | 1..259 | 1..259 | 1337 | 100 | Plus |
Pur-alpha-PD | 260 | CG1507-PD | 1..260 | 1..259 | 1325 | 99.6 | Plus |
Pur-alpha-PE | 274 | CG1507-PE | 22..274 | 7..259 | 1305 | 99.6 | Plus |
Pur-alpha-PC | 274 | CG1507-PC | 22..274 | 7..259 | 1305 | 99.6 | Plus |
Pur-alpha-PA | 274 | CG1507-PA | 22..274 | 7..259 | 1305 | 99.6 | Plus |