Clone RE62347 Report

Search the DGRC for RE62347

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:623
Well:47
Vector:pFlc-1
Associated Gene/TranscriptPur-alpha-RG
Protein status:RE62347.pep: gold
Sequenced Size:2561

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Pur-alpha-RD 2010-12-07 Manual selection by Ken Wan

Clone Sequence Records

RE62347.complete Sequence

2561 bp assembled on 2011-04-20

GenBank Submission: BT126365.1

> RE62347.complete
AGTTTTATCCGACGAACAAATAAAATAAGGGAGTGTCGATGTCATTTGTA
AGGGGCAGTGCGTGTGTGTGTAGATGTTCAGGGGAATGTTGTACACCGGA
CAAAAAGAATGGTTATACTATTAACTATATGCTGTCGTGTTGAGGCACAA
GAGTAGTGTAACATTAAAAGTGTGTCGCTGAAAAGGAAGGAAGCGTAACT
ATCTACCAAGCTTCGAGATTTTATAAATAGGTGGTCTCGTAATGTCCGAT
TTGGGAAGTGGAGATGATGGCATCTCAGGATCAAGGTTCCTCAAGTAGGA
ACGACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAATTG
GCTACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGTAAA
ACAAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTGATG
GTAGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTTCGT
GACCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACCAAA
CACCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGATAA
AAGATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGCCGA
TTTTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCAAAT
CGCTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAGATT
TGTTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTACCG
GAAGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATATCGG
ACAAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATAACT
TCCGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGAGAT
ATTTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAATTAC
TGCCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAATAAACAACAT
ACCGTGATTTACTAAGTTATATAAGAAGGCGCAAAAATAAAATTTTTAAT
GGCGATTGACCAACCAATATATGTAAAGCTTGTAATGTCTGACATGGCTA
AATTCTAAATCATGCGACTAATTAAGCTTAATGACAAACAAATATATTTA
TTTTGTAGCATTTAGCCCAATATGTTTTAGTATTCTATAAATTCTATATA
TAAATTAGTTAGAGTTACATTAGAGAAAATTAACTCTTAAAATCCATTTT
GAACTCTAAATGTCCTTTTTTGGCTGGCTGTTTAGCTTCTACTTAGTGCA
AGAAAATTTAATTTATTCATTGACTTGTTGGATTTGTCTTACAAGTGGAA
ATAGAAAGCCTGTTTTATTTGTTTTTGGAACTCACCAAATATTCATATCA
ATCGATCAATCTGTTTGGCACAAAGTTTTAATTTAGTTTGATTTTAATCA
ACCTGAAATGAACAACAAAATTAATTTTCTTTTAAAGAATTATTAATCTC
TTTGATTCATTATGTTATTTATTTTTTTTATCATTTACGTGGAGGAATAG
GGAATAGCGGAAATCTACTGATAATGAGCAGTTAACGATAACAATCGATG
TTTCGCACGCTTTTAAACCCAGTAAAAAAAGAAGTTCATATATAAGCCAA
AACAATTACACACACTCCCAATAATGACTTTCGGTGGAAATTAATAATTA
GTGCCATTTCTGTTGTAAATTTAAATATATATAGAACTTACTTTCGATTT
AAAATTGATAATTTGTGTCACCTAGGGTCATACTTCTCATTAAATGTATT
CATAAAGTTGATGGGTTATGCCACAATTAACTAATGTTAATGTAATTTGA
AATATCTTTGACAAATTAAGAAAAATTGTTAAAGATTCTAGGAATAATAT
GTTATATATATAATAATACAAATTAAAGTAACTCCTAAACTCGTTTTTAA
AACAAAAGTTTCATGTGATCACGTAGAATAAAAACTTACTAAGTACGATG
AACATGCATAGCAAAATAACAACATAGATCGAAAGCGCAACACAAGCACA
TACCGGATAAATTTCCATAAAGGAATATCGTGTACAGATTGGGTATGCTA
AGTAATAAATTAGCTGTACTAATTATTAAGTATTGAAATTTATCAGAATT
TGGGTTCAATAAAGAGAGAAAAAAAATAAATGTATTCGCTCTCACAAATA
AATTTATGATTTTATTCATATAATCGAAAGCTAGTTTACTAGATGAAATA
TAAAAATAATTTAATTTACTATAATTCTATTGAAACTAAAGCATCCGAAA
GTCCTACAAATTTCCATACTAGAGTCGATATTAATCAGACTATAAACACA
AAATCTTTATAATTATCTGTCAAATGTAAGCAAGATGTTACAGATATTCA
ACATAATATGTAGTTAACTTAAATGTTGTTTGCAAAAATACAAGTATTGT
AAGAGTTTTGTGAATATAACATGGAAATAAAGTTGAATTTTAACGAAAAA
AAAAAAAAAAA

RE62347.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 586150..587806 888..2544 8240 99.8 Plus
chr4 1351717 chr4 580644..580850 79..285 1035 100 Plus
chr4 1351717 chr4 585089..585213 659..783 625 100 Plus
chr4 1351717 chr4 584908..585031 539..662 620 100 Plus
chr4 1351717 chr4 581018..581132 323..437 575 100 Plus
chr4 1351717 chr4 585958..586066 781..889 545 100 Plus
chr4 1351717 chr4 581265..581371 436..542 535 100 Plus
chr4 1351717 chr4 578773..578850 1..78 390 100 Plus
chr4 1351717 chr4 580921..580961 285..325 205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 565601..567257 888..2544 8240 99.8 Plus
4 1348131 4 560095..560301 79..285 1035 100 Plus
4 1348131 4 564540..564664 659..783 625 100 Plus
4 1348131 4 564359..564482 539..662 620 100 Plus
4 1348131 4 560469..560583 323..437 575 100 Plus
4 1348131 4 565409..565517 781..889 545 100 Plus
4 1348131 4 560716..560822 436..542 535 100 Plus
4 1348131 4 558223..558300 1..78 390 100 Plus
4 1348131 4 560372..560412 285..325 205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 565601..567257 888..2544 8240 99.8 Plus
4 1331231 4 560095..560301 79..285 1035 100 Plus
4 1331231 4 564540..564664 659..783 625 100 Plus
4 1331231 4 564359..564482 539..662 620 100 Plus
4 1331231 4 560469..560583 323..437 575 100 Plus
4 1331231 4 565409..565517 781..889 545 100 Plus
4 1331231 4 560716..560822 436..542 535 100 Plus
4 1331231 4 558223..558300 1..78 390 100 Plus
4 1331231 4 560372..560412 285..325 205 100 Plus
Blast to na_te.dros performed 2019-03-15 10:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2544..2792 2154..2403 150 53.5 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5773..5885 1875..1989 137 62.4 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 1237..1290 1812..1757 121 75.4 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 1331..1458 2406..2530 119 57 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1512..1581 1292..1223 115 66.2 Minus

RE62347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:35:31 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 578773..578850 1..78 100 -> Plus
chr4 580644..580849 79..284 100 -> Plus
chr4 580921..580960 285..324 100 -> Plus
chr4 581020..581132 325..437 100 -> Plus
chr4 581267..581369 438..540 100 -> Plus
chr4 584910..585028 541..659 100 -> Plus
chr4 585090..585211 660..781 100 -> Plus
chr4 585959..586064 782..887 100 -> Plus
chr4 586150..587806 888..2545 95   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:39 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RC 1..44 242..284 97 -> Plus
Pur-alpha-RC 67..825 285..1043 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:19:59 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RG 1..780 264..1043 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:06:33 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RG 1..780 264..1043 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:39 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RD 1..1226 1..1223 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:19:59 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RG 1..2544 1..2544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:33 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
Pur-alpha-RG 1..2544 1..2544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:31 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
4 560718..560820 438..540 100 -> Plus
4 564361..564479 541..659 100 -> Plus
4 564541..564662 660..781 100 -> Plus
4 565410..565515 782..887 100 -> Plus
4 558223..558300 1..78 100 -> Plus
4 560095..560300 79..284 100 -> Plus
4 560372..560411 285..324 100 -> Plus
4 560471..560583 325..437 100 -> Plus
4 565601..567257 888..2545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:31 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
4 560718..560820 438..540 100 -> Plus
4 564361..564479 541..659 100 -> Plus
4 564541..564662 660..781 100 -> Plus
4 565410..565515 782..887 100 -> Plus
4 558223..558300 1..78 100 -> Plus
4 560095..560300 79..284 100 -> Plus
4 560372..560411 285..324 100 -> Plus
4 560471..560583 325..437 100 -> Plus
4 565601..567257 888..2545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:31 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
4 560718..560820 438..540 100 -> Plus
4 564361..564479 541..659 100 -> Plus
4 564541..564662 660..781 100 -> Plus
4 565410..565515 782..887 100 -> Plus
4 558223..558300 1..78 100 -> Plus
4 560095..560300 79..284 100 -> Plus
4 560372..560411 285..324 100 -> Plus
4 560471..560583 325..437 100 -> Plus
4 565601..567257 888..2545 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:19:59 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 585167..585288 660..781 100 -> Plus
arm_4 586036..586141 782..887 100 -> Plus
arm_4 578849..578926 1..78 100 -> Plus
arm_4 580721..580926 79..284 100 -> Plus
arm_4 580998..581037 285..324 100 -> Plus
arm_4 581097..581209 325..437 100 -> Plus
arm_4 581344..581446 438..540 100 -> Plus
arm_4 584987..585105 541..659 100 -> Plus
arm_4 586227..587883 888..2545 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:15 Download gff for RE62347.complete
Subject Subject Range Query Range Percent Splice Strand
4 560095..560300 79..284 100 -> Plus
4 560372..560411 285..324 100 -> Plus
4 560471..560583 325..437 100 -> Plus
4 560718..560820 438..540 100 -> Plus
4 564361..564479 541..659 100 -> Plus
4 564541..564662 660..781 100 -> Plus
4 565410..565515 782..887 100 -> Plus
4 565601..567257 888..2545 99   Plus
4 558223..558300 1..78 100 -> Plus

RE62347.pep Sequence

Translation from 263 to 1042

> RE62347.pep
MMASQDQGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRR
GRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNL
PEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA
QGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNR
GVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKMKKSSDSITAEIN
LPTSSNSLK*

RE62347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22832-PA 86 GF22832-PA 1..86 174..259 444 94.2 Plus
Dana\GF22830-PA 137 GF22830-PA 42..113 105..173 278 73.6 Plus
Dana\GF22830-PA 137 GF22830-PA 24..109 10..91 260 62.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16390-PA 274 GG16390-PA 22..274 7..259 1336 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24015-PA 188 GH24015-PA 18..188 3..173 821 92.4 Plus
Dgri\GH24015-PA 188 GH24015-PA 43..181 105..237 204 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-PG 259 CG1507-PG 1..259 1..259 1337 100 Plus
Pur-alpha-PD 260 CG1507-PD 1..260 1..259 1325 99.6 Plus
Pur-alpha-PE 274 CG1507-PE 22..274 7..259 1305 99.6 Plus
Pur-alpha-PC 274 CG1507-PC 22..274 7..259 1305 99.6 Plus
Pur-alpha-PA 274 CG1507-PA 22..274 7..259 1305 99.6 Plus
Pur-alpha-PF 275 CG1507-PF 22..275 7..259 1293 99.2 Plus
Pur-alpha-PB 275 CG1507-PB 22..275 7..259 1293 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14049-PA 273 GI14049-PA 18..273 3..259 1233 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18143-PA 275 GL18143-PA 23..275 7..259 1308 96.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26800-PA 275 GM26800-PA 22..275 7..259 1335 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19804-PA 274 GJ19804-PA 18..274 3..259 1263 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13584-PA 274 GK13584-PA 18..274 3..259 1281 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14552-PA 274 GE14552-PA 22..274 7..259 1334 98.4 Plus

RE62347.hyp Sequence

Translation from 263 to 1042

> RE62347.hyp
MMASQDQGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRR
GRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNL
PEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA
QGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNR
GVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKMKKSSDSITAEIN
LPTSSNSLK*

RE62347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pur-alpha-PG 259 CG1507-PG 1..259 1..259 1337 100 Plus
Pur-alpha-PD 260 CG1507-PD 1..260 1..259 1325 99.6 Plus
Pur-alpha-PE 274 CG1507-PE 22..274 7..259 1305 99.6 Plus
Pur-alpha-PC 274 CG1507-PC 22..274 7..259 1305 99.6 Plus
Pur-alpha-PA 274 CG1507-PA 22..274 7..259 1305 99.6 Plus